RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 EFCAB5A4FU69 1503 aa22.28■■□□□ 1.16
CLK3-209ENST00000562670 IQGAP2Q13576 1575 aa22.28■■□□□ 1.16
CLK3-209ENST00000562670 KIAA0586Q9BVV6 1533 aa22.27■■□□□ 1.16
CLK3-209ENST00000562670 CEP170Q5SW79 1584 aa22.25■■□□□ 1.15
CLK3-209ENST00000562670 CHMP7Q8WUX9 453 aaPredicted RBP22.25■■□□□ 1.15
CLK3-209ENST00000562670 CHD1O14646 1710 aa22.25■■□□□ 1.15
CLK3-209ENST00000562670 ARHGAP35Q9NRY4 1499 aa22.22■■□□□ 1.15
CLK3-209ENST00000562670 SAMD9Q5K651 1589 aa22.21■■□□□ 1.15
CLK3-209ENST00000562670 UGGT2Q9NYU1 1516 aa22.21■■□□□ 1.15
CLK3-209ENST00000562670 ARAP1Q96P48 1450 aa22.18■■□□□ 1.14
CLK3-209ENST00000562670 VPS8Q8N3P4 1428 aa22.14■■□□□ 1.14
CLK3-209ENST00000562670 FBLN2P98095 1184 aa22.1■■□□□ 1.13
CLK3-209ENST00000562670 CLASP1Q7Z460 1538 aa22.08■■□□□ 1.13
CLK3-209ENST00000562670 SHROOM2Q13796 1616 aa22.06■■□□□ 1.12
CLK3-209ENST00000562670 KIAA0556O60303 1618 aa22.06■■□□□ 1.12
CLK3-209ENST00000562670 DISP1Q96F81 1524 aa22.04■■□□□ 1.12
CLK3-209ENST00000562670 FHOD3Q2V2M9 1422 aa22.01■■□□□ 1.11
CLK3-209ENST00000562670 FMN1Q68DA7 1419 aa22.01■■□□□ 1.11
CLK3-209ENST00000562670 RANGAP1P46060 587 aaPredicted RBP22■■□□□ 1.11
CLK3-209ENST00000562670 CARMIL2Q6F5E8 1435 aa21.97■■□□□ 1.11
CLK3-209ENST00000562670 JPH4Q96JJ6 628 aa21.95■■□□□ 1.1
CLK3-209ENST00000562670 FYCO1Q9BQS8 1478 aa21.95■■□□□ 1.1
CLK3-209ENST00000562670 PCF11O94913 1555 aaKnown RBP21.93■■□□□ 1.1
CLK3-209ENST00000562670 CASKIN1Q8WXD9 1431 aa21.92■■□□□ 1.1
CLK3-209ENST00000562670 MAP3K1Q13233 1512 aa21.91■■□□□ 1.1
CLK3-209ENST00000562670 PRG4Q92954 1404 aaPredicted RBP21.89■■□□□ 1.09
CLK3-209ENST00000562670 P3H3Q8IVL6 736 aa21.85■■□□□ 1.09
CLK3-209ENST00000562670 CFAP43Q8NDM7 1665 aa21.84■■□□□ 1.09
CLK3-209ENST00000562670 HECW1Q76N89 1606 aa21.84■■□□□ 1.09
CLK3-209ENST00000562670 OSCARQ8IYS5 282 aa21.83■■□□□ 1.09
CLK3-209ENST00000562670 TIAM1Q13009 1591 aa21.81■■□□□ 1.08
CLK3-209ENST00000562670 RAPGEF6Q8TEU7 1601 aa21.79■■□□□ 1.08
CLK3-209ENST00000562670 CCDC18Q5T9S5 1454 aa21.78■■□□□ 1.08
CLK3-209ENST00000562670 ABCA8O94911 1581 aa21.76■■□□□ 1.07
CLK3-209ENST00000562670 ERCC6L2Q5T890 1561 aa21.76■■□□□ 1.07
CLK3-209ENST00000562670 APLP2Q06481 763 aa21.75■■□□□ 1.07
CLK3-209ENST00000562670 PTPRGP23470 1445 aa21.72■■□□□ 1.07
CLK3-209ENST00000562670 LRRIQ1Q96JM4 1722 aa21.72■■□□□ 1.07
CLK3-209ENST00000562670 NUP153P49790 1475 aaKnown RBP21.71■■□□□ 1.07
CLK3-209ENST00000562670 EPRSP07814 1512 aaKnown RBP21.7■■□□□ 1.06
CLK3-209ENST00000562670 PLB1Q6P1J6 1458 aa21.69■■□□□ 1.06
CLK3-209ENST00000562670 LRRC9Q6ZRR7 1453 aa21.68■■□□□ 1.06
CLK3-209ENST00000562670 UHRF1BP1LA0JNW5 1464 aa21.64■■□□□ 1.06
CLK3-209ENST00000562670 ABCC2Q92887 1545 aa21.64■■□□□ 1.05
CLK3-209ENST00000562670 UACAQ9BZF9 1416 aa21.63■■□□□ 1.05
CLK3-209ENST00000562670 EHBP1L1Q8N3D4 1523 aa21.63■■□□□ 1.05
CLK3-209ENST00000562670 CDK13Q14004 1512 aaKnown RBP21.6■■□□□ 1.05
CLK3-209ENST00000562670 KANK4Q5T7N3 995 aaPredicted RBP21.57■■□□□ 1.04
CLK3-209ENST00000562670 ARHGEF11O15085 1522 aa21.56■■□□□ 1.04
CLK3-209ENST00000562670 ATP1B4Q9UN42 357 aaPredicted RBP21.55■■□□□ 1.04
CLK3-209ENST00000562670 MAGI3Q5TCQ9 1506 aa21.55■■□□□ 1.04
CLK3-209ENST00000562670 MTUS2Q5JR59 1369 aa21.54■■□□□ 1.04
CLK3-209ENST00000562670 ATP10BO94823 1461 aa21.53■■□□□ 1.04
CLK3-209ENST00000562670 TRIM26Q12899 539 aaPredicted RBP21.53■■□□□ 1.04
CLK3-209ENST00000562670 SUPT6HQ7KZ85 1726 aaKnown RBP21.52■■□□□ 1.03
CLK3-209ENST00000562670 KDM5BQ9UGL1 1544 aa21.51■■□□□ 1.03
CLK3-209ENST00000562670 TTBK1Q5TCY1 1321 aaPredicted RBP21.51■■□□□ 1.03
CLK3-209ENST00000562670 ADCY10Q96PN6 1610 aa21.5■■□□□ 1.03
CLK3-209ENST00000562670 PPARGC1BQ86YN6 1023 aaKnown RBP21.49■■□□□ 1.03
CLK3-209ENST00000562670 CDK11AQ9UQ88 783 aaPredicted RBP21.49■■□□□ 1.03
CLK3-209ENST00000562670 TROQ12816 1431 aaPredicted RBP21.48■■□□□ 1.03
CLK3-209ENST00000562670 RIMBP3CA6NJZ7 1639 aa21.47■■□□□ 1.03
CLK3-209ENST00000562670 RIMBP3BA6NNM3 1639 aa21.47■■□□□ 1.03
CLK3-209ENST00000562670 RIMBP3Q9UFD9 1639 aa21.47■■□□□ 1.03
CLK3-209ENST00000562670 ZCCHC11Q5TAX3 1644 aaKnown RBP21.45■■□□□ 1.02
CLK3-209ENST00000562670 RRBP1Q9P2E9 1410 aaKnown RBP21.45■■□□□ 1.02
CLK3-209ENST00000562670 NCOA2Q15596 1464 aa21.45■■□□□ 1.02
CLK3-209ENST00000562670 KIF14Q15058 1648 aa21.4■■□□□ 1.02
CLK3-209ENST00000562670 PHLDB1Q86UU1 1377 aa21.4■■□□□ 1.02
CLK3-209ENST00000562670 MYOM3Q5VTT5 1437 aa21.37■■□□□ 1.01
CLK3-209ENST00000562670 PLEKHD1A6NEE1 506 aa21.35■■□□□ 1.01
CLK3-209ENST00000562670 ARID3CA6NKF2 412 aa21.35■■□□□ 1.01
CLK3-209ENST00000562670 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.35■■□□□ 1.01
CLK3-209ENST00000562670 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.34■■□□□ 1.01
CLK3-209ENST00000562670 HNRNPUL2Q1KMD3 747 aaKnown RBP21.34■■□□□ 1.01
CLK3-209ENST00000562670 CCNB3Q8WWL7 1395 aa21.34■■□□□ 1.01
CLK3-209ENST00000562670 FGD6Q6ZV73 1430 aa21.33■■□□□ 1.01
CLK3-209ENST00000562670 ITSN2Q9NZM3 1697 aa21.33■■□□□ 1
CLK3-209ENST00000562670 ABCC10Q5T3U5 1492 aa21.32■■□□□ 1
CLK3-209ENST00000562670 MIA2Q96PC5 1412 aa21.32■■□□□ 1
CLK3-209ENST00000562670 PCGF6Q9BYE7 350 aa21.3■■□□□ 1
CLK3-209ENST00000562670 WDR7Q9Y4E6 1490 aa21.3■■□□□ 1
CLK3-209ENST00000562670 TCOF1Q13428 1488 aaKnown RBP21.28■■□□□ 1
CLK3-209ENST00000562670 MAPKBP1O60336 1514 aa21.26■□□□□ 0.99
CLK3-209ENST00000562670 PTPN23Q9H3S7 1636 aa21.25■□□□□ 0.99
CLK3-209ENST00000562670 GPATCH8Q9UKJ3 1502 aaKnown RBP21.24■□□□□ 0.99
CLK3-209ENST00000562670 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.24■□□□□ 0.993e-12■□□□□ 9.1
CLK3-209ENST00000562670 CDC42BPAQ5VT25 1732 aa21.24■□□□□ 0.99
CLK3-209ENST00000562670 ASXL2Q76L83 1435 aa21.23■□□□□ 0.99
CLK3-209ENST00000562670 PREX2Q70Z35 1606 aa21.22■□□□□ 0.99
CLK3-209ENST00000562670 TTC37Q6PGP7 1564 aa21.22■□□□□ 0.99
CLK3-209ENST00000562670 ARAP3Q8WWN8 1544 aa21.2■□□□□ 0.98
CLK3-209ENST00000562670 NPM1P06748 294 aaKnown RBP eCLIP21.2■□□□□ 0.98
CLK3-209ENST00000562670 ABCA9Q8IUA7 1624 aa21.19■□□□□ 0.98
CLK3-209ENST00000562670 MYO5CQ9NQX4 1742 aa21.18■□□□□ 0.98
CLK3-209ENST00000562670 CYB5RLQ6IPT4 315 aa21.16■□□□□ 0.98
CLK3-209ENST00000562670 CDC42BPBQ9Y5S2 1711 aa21.13■□□□□ 0.97
CLK3-209ENST00000562670 CAMSAP2Q08AD1 1489 aa21.13■□□□□ 0.97
CLK3-209ENST00000562670 PLCH2O75038 1416 aa21.11■□□□□ 0.97
CLK3-209ENST00000562670 CFDP1Q9UEE9 299 aaPredicted RBP21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 156.1 ms