RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 CHMP7Q8WUX9 453 aaPredicted RBP15.77■□□□□ 0.12
CUX1-216ENST00000558469 RAPGEF2Q9Y4G8 1499 aa15.77■□□□□ 0.11
CUX1-216ENST00000558469 EHMT2Q96KQ7 1210 aa15.76■□□□□ 0.11
CUX1-216ENST00000558469 GRIN2AQ12879 1464 aa15.73■□□□□ 0.11
CUX1-216ENST00000558469 GOLGA3Q08378 1498 aa15.7■□□□□ 0.1
CUX1-216ENST00000558469 CTTNBP2Q8WZ74 1663 aa15.69■□□□□ 0.1
CUX1-216ENST00000558469 LOC105371045A0A1W2PR82 267 aa15.67■□□□□ 0.1
CUX1-216ENST00000558469 CEP170Q5SW79 1584 aa15.66■□□□□ 0.1
CUX1-216ENST00000558469 UBTFP17480 764 aaKnown RBP15.65■□□□□ 0.1
CUX1-216ENST00000558469 NUP160Q12769 1436 aa15.62■□□□□ 0.09
CUX1-216ENST00000558469 OSCARQ8IYS5 282 aa15.61■□□□□ 0.09
CUX1-216ENST00000558469 KIAA0586Q9BVV6 1533 aa15.58■□□□□ 0.09
CUX1-216ENST00000558469 IQGAP2Q13576 1575 aa15.58■□□□□ 0.09
CUX1-216ENST00000558469 CLASP1Q7Z460 1538 aa15.57■□□□□ 0.08
CUX1-216ENST00000558469 TNIKQ9UKE5 1360 aa15.55■□□□□ 0.08
CUX1-216ENST00000558469 RANGAP1P46060 587 aaPredicted RBP15.53■□□□□ 0.08
CUX1-216ENST00000558469 SHROOM2Q13796 1616 aa15.51■□□□□ 0.07
CUX1-216ENST00000558469 JPH4Q96JJ6 628 aa15.49■□□□□ 0.07
CUX1-216ENST00000558469 UGGT2Q9NYU1 1516 aa15.48■□□□□ 0.07
CUX1-216ENST00000558469 SAMD9Q5K651 1589 aa15.45■□□□□ 0.06
CUX1-216ENST00000558469 CEP162Q5TB80 1403 aa15.44■□□□□ 0.06
CUX1-216ENST00000558469 PRG4Q92954 1404 aaPredicted RBP15.44■□□□□ 0.06
CUX1-216ENST00000558469 KIAA0556O60303 1618 aa15.43■□□□□ 0.06
CUX1-216ENST00000558469 CLIP1P30622 1438 aa15.43■□□□□ 0.06
CUX1-216ENST00000558469 ERCC6L2Q5T890 1561 aa15.42■□□□□ 0.06
CUX1-216ENST00000558469 EFCAB5A4FU69 1503 aa15.42■□□□□ 0.06
CUX1-216ENST00000558469 DISP1Q96F81 1524 aa15.42■□□□□ 0.06
CUX1-216ENST00000558469 P3H3Q8IVL6 736 aa15.41■□□□□ 0.06
CUX1-216ENST00000558469 CARMIL2Q6F5E8 1435 aa15.41■□□□□ 0.06
CUX1-216ENST00000558469 ARHGAP35Q9NRY4 1499 aa15.4■□□□□ 0.06
CUX1-216ENST00000558469 RIMBP3CA6NJZ7 1639 aa15.36■□□□□ 0.05
CUX1-216ENST00000558469 RIMBP3BA6NNM3 1639 aa15.36■□□□□ 0.05
CUX1-216ENST00000558469 RIMBP3Q9UFD9 1639 aa15.36■□□□□ 0.05
CUX1-216ENST00000558469 ARHGEF11O15085 1522 aa15.36■□□□□ 0.05
CUX1-216ENST00000558469 FHOD3Q2V2M9 1422 aa15.35■□□□□ 0.05
CUX1-216ENST00000558469 TTBK1Q5TCY1 1321 aaPredicted RBP15.35■□□□□ 0.05
CUX1-216ENST00000558469 ARAP1Q96P48 1450 aa15.33■□□□□ 0.05
CUX1-216ENST00000558469 PTPRGP23470 1445 aa15.29■□□□□ 0.04
CUX1-216ENST00000558469 DNAJC5Q9H3Z4 198 aa15.27■□□□□ 0.04
CUX1-216ENST00000558469 FMN1Q68DA7 1419 aa15.26■□□□□ 0.03
CUX1-216ENST00000558469 RAPGEF6Q8TEU7 1601 aa15.25■□□□□ 0.03
CUX1-216ENST00000558469 POTEDQ86YR6 584 aa15.24■□□□□ 0.03
CUX1-216ENST00000558469 PLB1Q6P1J6 1458 aa15.23■□□□□ 0.03
CUX1-216ENST00000558469 PCF11O94913 1555 aaKnown RBP15.23■□□□□ 0.03
CUX1-216ENST00000558469 VPS8Q8N3P4 1428 aa15.22■□□□□ 0.03
CUX1-216ENST00000558469 ABCA8O94911 1581 aa15.22■□□□□ 0.03
CUX1-216ENST00000558469 LRRIQ1Q96JM4 1722 aa15.21■□□□□ 0.03
CUX1-216ENST00000558469 CYB5RLQ6IPT4 315 aa15.21■□□□□ 0.03
CUX1-216ENST00000558469 ATP1B4Q9UN42 357 aaPredicted RBP15.2■□□□□ 0.02
CUX1-216ENST00000558469 UACAQ9BZF9 1416 aa15.19■□□□□ 0.02
CUX1-216ENST00000558469 HECW1Q76N89 1606 aa15.19■□□□□ 0.02
CUX1-216ENST00000558469 ADCY10Q96PN6 1610 aa15.19■□□□□ 0.02
CUX1-216ENST00000558469 CASKIN1Q8WXD9 1431 aa15.18■□□□□ 0.02
CUX1-216ENST00000558469 ABCC2Q92887 1545 aa15.17■□□□□ 0.02
CUX1-216ENST00000558469 FYCO1Q9BQS8 1478 aa15.17■□□□□ 0.02
CUX1-216ENST00000558469 UHRF1BP1LA0JNW5 1464 aa15.15■□□□□ 0.02
CUX1-216ENST00000558469 NUP153P49790 1475 aaKnown RBP15.14■□□□□ 0.01
CUX1-216ENST00000558469 ARID3CA6NKF2 412 aa15.14■□□□□ 0.01
CUX1-216ENST00000558469 ZCCHC11Q5TAX3 1644 aaKnown RBP15.13■□□□□ 0.01
CUX1-216ENST00000558469 EPRSP07814 1512 aaKnown RBP15.12■□□□□ 0.01
CUX1-216ENST00000558469 CDK13Q14004 1512 aaKnown RBP15.11■□□□□ 0.01
CUX1-216ENST00000558469 CFAP43Q8NDM7 1665 aa15.1■□□□□ 0.01
CUX1-216ENST00000558469 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.1■□□□□ 0.01
CUX1-216ENST00000558469 HNRNPUL2Q1KMD3 747 aaKnown RBP15.1■□□□□ 0.01
CUX1-216ENST00000558469 ATP10BO94823 1461 aa15.09■□□□□ 0.01
CUX1-216ENST00000558469 CCDC18Q5T9S5 1454 aa15.09■□□□□ 0.01
CUX1-216ENST00000558469 KDM5BQ9UGL1 1544 aa15.09■□□□□ 0.01
CUX1-216ENST00000558469 NPM1P06748 294 aaKnown RBP eCLIP15.08■□□□□ 0
CUX1-216ENST00000558469 APLP2Q06481 763 aa15.08■□□□□ 0
CUX1-216ENST00000558469 TIAM1Q13009 1591 aa15.07■□□□□ 0
CUX1-216ENST00000558469 MAP3K1Q13233 1512 aa15.04■□□□□ -0
CUX1-216ENST00000558469 CDK11AQ9UQ88 783 aaPredicted RBP15.01□□□□□ -0.01
CUX1-216ENST00000558469 MAGI3Q5TCQ9 1506 aa15.01□□□□□ -0.01
CUX1-216ENST00000558469 MAPK8IP2Q13387 824 aaPredicted RBP15□□□□□ -0.01
CUX1-216ENST00000558469 SCAF1Q9H7N4 1312 aaKnown RBP14.99□□□□□ -0.01
CUX1-216ENST00000558469 PLEKHD1A6NEE1 506 aa14.99□□□□□ -0.01
CUX1-216ENST00000558469 KANK4Q5T7N3 995 aaPredicted RBP14.99□□□□□ -0.01
CUX1-216ENST00000558469 ASXL2Q76L83 1435 aa14.99□□□□□ -0.01
CUX1-216ENST00000558469 MAPKBP1O60336 1514 aa14.98□□□□□ -0.01
CUX1-216ENST00000558469 LRRC9Q6ZRR7 1453 aa14.98□□□□□ -0.01
CUX1-216ENST00000558469 PPARGC1BQ86YN6 1023 aaKnown RBP14.98□□□□□ -0.01
CUX1-216ENST00000558469 MTUS2Q5JR59 1369 aa14.98□□□□□ -0.01
CUX1-216ENST00000558469 EHBP1L1Q8N3D4 1523 aa14.97□□□□□ -0.01
CUX1-216ENST00000558469 WDR7Q9Y4E6 1490 aa14.96□□□□□ -0.01
CUX1-216ENST00000558469 SUPT6HQ7KZ85 1726 aaKnown RBP14.95□□□□□ -0.02
CUX1-216ENST00000558469 TROQ12816 1431 aaPredicted RBP14.95□□□□□ -0.02
CUX1-216ENST00000558469 KCNH8Q96L42 1107 aa14.95□□□□□ -0.02
CUX1-216ENST00000558469 KIF14Q15058 1648 aa14.95□□□□□ -0.02
CUX1-216ENST00000558469 PPP4R3CPQ6ZMV5 832 aa14.92□□□□□ -0.02
CUX1-216ENST00000558469 KIF13AQ9H1H9 1805 aa14.91□□□□□ -0.02
CUX1-216ENST00000558469 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.89□□□□□ -0.03
CUX1-216ENST00000558469 TTC37Q6PGP7 1564 aa14.88□□□□□ -0.03
CUX1-216ENST00000558469 DIP2BQ9P265 1576 aa14.88□□□□□ -0.03
CUX1-216ENST00000558469 CDC42BPAQ5VT25 1732 aa14.88□□□□□ -0.03
CUX1-216ENST00000558469 MYO5CQ9NQX4 1742 aa14.88□□□□□ -0.03
CUX1-216ENST00000558469 NCOA2Q15596 1464 aa14.88□□□□□ -0.03
CUX1-216ENST00000558469 ABCA9Q8IUA7 1624 aa14.88□□□□□ -0.03
CUX1-216ENST00000558469 ABCC10Q5T3U5 1492 aa14.86□□□□□ -0.03
CUX1-216ENST00000558469 TSPOAP1O95153 1857 aa14.86□□□□□ -0.03
CUX1-216ENST00000558469 GLI2P10070 1586 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms