RNA–Protein interactions for RNA: ENST00000558439.5

AP4E1-202, Transcript of adaptor related protein complex 4 subunit epsilon 1, humanhuman

TSL 1 (best)

Gene AP4E1, Length 4,165 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1-202ENST00000558439 FAM9BQ8IZU0 186 aa21.48■■□□□ 1.03
AP4E1-202ENST00000558439 KCNH8Q96L42 1107 aa21.47■■□□□ 1.03
AP4E1-202ENST00000558439 SETD5Q9C0A6 1442 aa21.47■■□□□ 1.03
AP4E1-202ENST00000558439 IRX6P78412 446 aaPredicted RBP21.47■■□□□ 1.03
AP4E1-202ENST00000558439 MYT1LQ9UL68 1186 aa21.46■■□□□ 1.03
AP4E1-202ENST00000558439 CADPSQ9ULU8 1353 aa21.44■■□□□ 1.02
AP4E1-202ENST00000558439 FHAD1B1AJZ9 1412 aa21.44■■□□□ 1.02
AP4E1-202ENST00000558439 TDRD9Q8NDG6 1382 aaKnown RBP21.41■■□□□ 1.02
AP4E1-202ENST00000558439 BICRAQ9NZM4 1560 aa21.41■■□□□ 1.02
AP4E1-202ENST00000558439 CDK11AQ9UQ88 783 aaPredicted RBP21.41■■□□□ 1.02
AP4E1-202ENST00000558439 IGF1RP08069 1367 aa21.4■■□□□ 1.02
AP4E1-202ENST00000558439 FHOD3Q2V2M9 1422 aa21.39■■□□□ 1.02
AP4E1-202ENST00000558439 ARAP1Q96P48 1450 aa21.39■■□□□ 1.01
AP4E1-202ENST00000558439 SENP3-EIF4A1A0A087X0R7 540 aa21.35■■□□□ 1.01
AP4E1-202ENST00000558439 EIF4G2P78344 907 aaKnown RBP eCLIP21.33■■□□□ 1.01
AP4E1-202ENST00000558439 SLC4A1APQ9BWU0 796 aaKnown RBP21.33■■□□□ 1
AP4E1-202ENST00000558439 EIF4G1Q04637 1599 aaKnown RBP21.32■■□□□ 1
AP4E1-202ENST00000558439 MRS2Q9HD23 443 aa21.3■■□□□ 1
AP4E1-202ENST00000558439 NCAPD3P42695 1498 aa21.3■■□□□ 1
AP4E1-202ENST00000558439 ARHGAP35Q9NRY4 1499 aa21.3■■□□□ 1
AP4E1-202ENST00000558439 FOXD1Q16676 465 aa21.29■■□□□ 1
AP4E1-202ENST00000558439 PPP1R15AO75807 674 aaPredicted RBP21.29■■□□□ 1
AP4E1-202ENST00000558439 PRXQ9BXM0 1461 aa21.28■■□□□ 1
AP4E1-202ENST00000558439 UNC13AQ9UPW8 1703 aa21.27■□□□□ 0.99
AP4E1-202ENST00000558439 KDM2AQ9Y2K7 1162 aa21.26■□□□□ 0.99
AP4E1-202ENST00000558439 CHMP7Q8WUX9 453 aaPredicted RBP21.25■□□□□ 0.99
AP4E1-202ENST00000558439 FGD5Q6ZNL6 1462 aa21.24■□□□□ 0.99
AP4E1-202ENST00000558439 TOP2BQ02880 1626 aa21.23■□□□□ 0.99
AP4E1-202ENST00000558439 PHLDB1Q86UU1 1377 aa21.23■□□□□ 0.99
AP4E1-202ENST00000558439 SALL2Q9Y467 1007 aaPredicted RBP21.22■□□□□ 0.99
AP4E1-202ENST00000558439 CUX1P39880 1505 aa21.22■□□□□ 0.99
AP4E1-202ENST00000558439 TIMELESSQ9UNS1 1208 aa21.21■□□□□ 0.99
AP4E1-202ENST00000558439 RAD54L2Q9Y4B4 1467 aa21.21■□□□□ 0.99
AP4E1-202ENST00000558439 FANCD2Q9BXW9 1451 aa21.18■□□□□ 0.98
AP4E1-202ENST00000558439 CFTRP13569 1480 aa21.18■□□□□ 0.98
AP4E1-202ENST00000558439 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.15■□□□□ 0.98
AP4E1-202ENST00000558439 CFDP1Q9UEE9 299 aaPredicted RBP21.15■□□□□ 0.98
AP4E1-202ENST00000558439 ERICH3Q5RHP9 1530 aa21.15■□□□□ 0.98
AP4E1-202ENST00000558439 HSPA5P11021 654 aaKnown RBP21.15■□□□□ 0.98
AP4E1-202ENST00000558439 FMN1Q68DA7 1419 aa21.14■□□□□ 0.97
AP4E1-202ENST00000558439 RRBP1Q9P2E9 1410 aaKnown RBP21.12■□□□□ 0.97
AP4E1-202ENST00000558439 TSPY4P0CV99 314 aa21.11■□□□□ 0.97
AP4E1-202ENST00000558439 TSPY10P0CW01 314 aa21.11■□□□□ 0.97
AP4E1-202ENST00000558439 TMC1Q8TDI8 760 aa21.1■□□□□ 0.97
AP4E1-202ENST00000558439 LRRC9Q6ZRR7 1453 aa21.08■□□□□ 0.96
AP4E1-202ENST00000558439 CCER2I3L3R5 266 aa21.08■□□□□ 0.96
AP4E1-202ENST00000558439 PEG3Q9GZU2 1588 aa21.08■□□□□ 0.96
AP4E1-202ENST00000558439 MPHOSPH9Q99550 1183 aa21.07■□□□□ 0.96
AP4E1-202ENST00000558439 TSHZ2Q9NRE2 1034 aa21.05■□□□□ 0.96
AP4E1-202ENST00000558439 RGL3Q3MIN7 710 aa21.04■□□□□ 0.96
AP4E1-202ENST00000558439 PLEKHD1A6NEE1 506 aa21.04■□□□□ 0.96
AP4E1-202ENST00000558439 L3MBTL2Q969R5 705 aa21.04■□□□□ 0.96
AP4E1-202ENST00000558439 PDS5BQ9NTI5 1447 aa21■□□□□ 0.95
AP4E1-202ENST00000558439 NESP48681 1621 aa20.98■□□□□ 0.95
AP4E1-202ENST00000558439 HMGXB3Q12766 1538 aa20.97■□□□□ 0.95
AP4E1-202ENST00000558439 CCDC136Q96JN2 1154 aa20.97■□□□□ 0.95
AP4E1-202ENST00000558439 CARD11Q9BXL7 1154 aa20.94■□□□□ 0.94
AP4E1-202ENST00000558439 DAXXQ9UER7 740 aaPredicted RBP20.94■□□□□ 0.94
AP4E1-202ENST00000558439 CCDC18Q5T9S5 1454 aa20.94■□□□□ 0.94
AP4E1-202ENST00000558439 NPM2Q86SE8 214 aaKnown RBP20.94■□□□□ 0.94
AP4E1-202ENST00000558439 FGD6Q6ZV73 1430 aa20.93■□□□□ 0.94
AP4E1-202ENST00000558439 B4GALNT3Q6L9W6 998 aa20.93■□□□□ 0.94
AP4E1-202ENST00000558439 PKD2Q13563 968 aa20.9■□□□□ 0.94
AP4E1-202ENST00000558439 ANP32EQ9BTT0 268 aa20.9■□□□□ 0.94
AP4E1-202ENST00000558439 RBM19Q9Y4C8 960 aaKnown RBP20.9■□□□□ 0.94
AP4E1-202ENST00000558439 RTL5Q5HYW3 569 aaPredicted RBP20.89■□□□□ 0.93
AP4E1-202ENST00000558439 DNAJC5BQ9UF47 199 aa20.87■□□□□ 0.93
AP4E1-202ENST00000558439 GAPVD1Q14C86 1478 aa20.87■□□□□ 0.93
AP4E1-202ENST00000558439 TIAM1Q13009 1591 aa20.87■□□□□ 0.93
AP4E1-202ENST00000558439 ZNF644Q9H582 1327 aaPredicted RBP20.86■□□□□ 0.93
AP4E1-202ENST00000558439 DCAF11Q8TEB1 546 aa20.85■□□□□ 0.93
AP4E1-202ENST00000558439 CASKIN1Q8WXD9 1431 aa20.85■□□□□ 0.93
AP4E1-202ENST00000558439 POLA1P09884 1462 aaPredicted RBP20.83■□□□□ 0.92
AP4E1-202ENST00000558439 ANP32AP39687 249 aaKnown RBP20.82■□□□□ 0.92
AP4E1-202ENST00000558439 WDR97A6NE52 1622 aa20.82■□□□□ 0.92
AP4E1-202ENST00000558439 PPP4R2Q9NY27 417 aa20.82■□□□□ 0.92
AP4E1-202ENST00000558439 BIVM-ERCC5R4GMW8 1640 aa20.8■□□□□ 0.92
AP4E1-202ENST00000558439 MYOM3Q5VTT5 1437 aa20.8■□□□□ 0.92
AP4E1-202ENST00000558439 ERCC6Q03468 1493 aa20.79■□□□□ 0.92
AP4E1-202ENST00000558439 CHGAP10645 457 aaKnown RBP20.79■□□□□ 0.92
AP4E1-202ENST00000558439 NBR1Q14596 966 aa20.78■□□□□ 0.92
AP4E1-202ENST00000558439 TOPBP1Q92547 1522 aa20.78■□□□□ 0.92
AP4E1-202ENST00000558439 AQRO60306 1485 aaKnown RBP eCLIP20.78■□□□□ 0.92
AP4E1-202ENST00000558439 NCOA2Q15596 1464 aa20.78■□□□□ 0.92
AP4E1-202ENST00000558439 UACAQ9BZF9 1416 aa20.78■□□□□ 0.92
AP4E1-202ENST00000558439 CC2D2AQ9P2K1 1620 aa20.76■□□□□ 0.91
AP4E1-202ENST00000558439 FYCO1Q9BQS8 1478 aa20.75■□□□□ 0.91
AP4E1-202ENST00000558439 NUP155O75694 1391 aa20.73■□□□□ 0.91
AP4E1-202ENST00000558439 PRKRIP1Q9H875 184 aaPredicted RBP20.73■□□□□ 0.91
AP4E1-202ENST00000558439 WASHC2AQ641Q2 1341 aa20.73■□□□□ 0.91
AP4E1-202ENST00000558439 HNRNPMP52272 730 aaKnown RBP eCLIP20.71■□□□□ 0.91
AP4E1-202ENST00000558439 CC2D1BQ5T0F9 858 aaKnown RBP20.71■□□□□ 0.91
AP4E1-202ENST00000558439 PCF11O94913 1555 aaKnown RBP20.69■□□□□ 0.9
AP4E1-202ENST00000558439 JPH4Q96JJ6 628 aa20.69■□□□□ 0.9
AP4E1-202ENST00000558439 SENP3Q9H4L4 574 aaPredicted RBP20.69■□□□□ 0.9
AP4E1-202ENST00000558439 CANXP27824 592 aaKnown RBP20.66■□□□□ 0.9
AP4E1-202ENST00000558439 WDR43Q15061 677 aaKnown RBP eCLIP20.64■□□□□ 0.89
AP4E1-202ENST00000558439 CCDC184Q52MB2 194 aa20.64■□□□□ 0.89
AP4E1-202ENST00000558439 HFM1A2PYH4 1435 aa20.63■□□□□ 0.89
AP4E1-202ENST00000558439 ZBTB47Q9UFB7 747 aaPredicted RBP20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms