RNA–Protein interactions for RNA: ENST00000558439.5

AP4E1-202, Transcript of adaptor related protein complex 4 subunit epsilon 1, humanhuman

TSL 1 (best)

Gene AP4E1, Length 4,165 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1-202ENST00000558439 NISCHQ9Y2I1 1504 aa29.27■■■□□ 2.28
AP4E1-202ENST00000558439 DCAF8L2P0C7V8 631 aa27.11■■□□□ 1.93
AP4E1-202ENST00000558439 SHROOM4Q9ULL8 1493 aa26.84■■□□□ 1.89
AP4E1-202ENST00000558439 SUPT5HO00267 1087 aaKnown RBP26.75■■□□□ 1.87
AP4E1-202ENST00000558439 EHMT2Q96KQ7 1210 aa25.29■■□□□ 1.64
AP4E1-202ENST00000558439 PCGF6Q9BYE7 350 aa25.19■■□□□ 1.62
AP4E1-202ENST00000558439 FAM9AQ8IZU1 332 aaPredicted RBP25■■□□□ 1.59
AP4E1-202ENST00000558439 CHIC1Q5VXU3 224 aa24.99■■□□□ 1.59
AP4E1-202ENST00000558439 LOC105371045A0A1W2PR82 267 aa24.75■■□□□ 1.55
AP4E1-202ENST00000558439 TRIM41Q8WV44 630 aa24.66■■□□□ 1.54
AP4E1-202ENST00000558439 HRCP23327 699 aa24.51■■□□□ 1.51
AP4E1-202ENST00000558439 ZCCHC6Q5VYS8 1495 aaKnown RBP24.51■■□□□ 1.51
AP4E1-202ENST00000558439 TTBK1Q5TCY1 1321 aaPredicted RBP24.41■■□□□ 1.5
AP4E1-202ENST00000558439 PPARGC1BQ86YN6 1023 aaKnown RBP24.35■■□□□ 1.49
AP4E1-202ENST00000558439 TRIM26Q12899 539 aaPredicted RBP24.21■■□□□ 1.47
AP4E1-202ENST00000558439 CCDC180Q9P1Z9 1646 aa24.09■■□□□ 1.45
AP4E1-202ENST00000558439 MYO15BQ96JP2 1530 aa24.09■■□□□ 1.45
AP4E1-202ENST00000558439 ABCC9O60706 1549 aa24■■□□□ 1.43
AP4E1-202ENST00000558439 ZEB1P37275 1124 aaPredicted RBP23.95■■□□□ 1.42
AP4E1-202ENST00000558439 RANGAP1P46060 587 aaPredicted RBP23.94■■□□□ 1.42
AP4E1-202ENST00000558439 CCER1Q8TC90 406 aaPredicted RBP23.93■■□□□ 1.42
AP4E1-202ENST00000558439 UBTFP17480 764 aaKnown RBP23.88■■□□□ 1.41
AP4E1-202ENST00000558439 APLP2Q06481 763 aa23.76■■□□□ 1.39
AP4E1-202ENST00000558439 SCRIBQ14160 1630 aa23.73■■□□□ 1.39
AP4E1-202ENST00000558439 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.61■■□□□ 1.37
AP4E1-202ENST00000558439 PABPN1Q86U42 306 aaKnown RBP eCLIP23.57■■□□□ 1.36
AP4E1-202ENST00000558439 DCAF1Q9Y4B6 1507 aa23.51■■□□□ 1.35
AP4E1-202ENST00000558439 RSF1Q96T23 1441 aaPredicted RBP23.48■■□□□ 1.35
AP4E1-202ENST00000558439 HNRNPUL2Q1KMD3 747 aaKnown RBP23.34■■□□□ 1.33
AP4E1-202ENST00000558439 YTHDC1Q96MU7 727 aaKnown RBP23.3■■□□□ 1.32
AP4E1-202ENST00000558439 CENPBP07199 599 aaPredicted RBP23.28■■□□□ 1.32
AP4E1-202ENST00000558439 ATP1B4Q9UN42 357 aaPredicted RBP23.17■■□□□ 1.3
AP4E1-202ENST00000558439 CECR2Q9BXF3 1484 aa23.15■■□□□ 1.3
AP4E1-202ENST00000558439 CSRNP3Q8WYN3 585 aa23.1■■□□□ 1.29
AP4E1-202ENST00000558439 DIEXFQ68CQ4 756 aaKnown RBP23.09■■□□□ 1.29
AP4E1-202ENST00000558439 ITGAEP38570 1179 aa23.06■■□□□ 1.28
AP4E1-202ENST00000558439 RB1CC1Q8TDY2 1594 aa23.01■■□□□ 1.27
AP4E1-202ENST00000558439 MROH2BQ7Z745 1585 aa22.88■■□□□ 1.25
AP4E1-202ENST00000558439 NACADO15069 1562 aa22.87■■□□□ 1.25
AP4E1-202ENST00000558439 PELP1Q8IZL8 1130 aaKnown RBP22.8■■□□□ 1.24
AP4E1-202ENST00000558439 GTF3C3Q9Y5Q9 886 aa22.73■■□□□ 1.23
AP4E1-202ENST00000558439 ZNF316A6NFI3 1004 aaPredicted RBP22.7■■□□□ 1.22
AP4E1-202ENST00000558439 CEP162Q5TB80 1403 aa22.65■■□□□ 1.22
AP4E1-202ENST00000558439 ACIN1Q9UKV3 1341 aaKnown RBP22.65■■□□□ 1.22
AP4E1-202ENST00000558439 WIZO95785 1651 aa22.63■■□□□ 1.21
AP4E1-202ENST00000558439 SCAF1Q9H7N4 1312 aaKnown RBP22.62■■□□□ 1.21
AP4E1-202ENST00000558439 SOGA1O94964 1423 aa22.61■■□□□ 1.21
AP4E1-202ENST00000558439 BAZ1AQ9NRL2 1556 aaPredicted RBP22.6■■□□□ 1.21
AP4E1-202ENST00000558439 NEUROD1Q13562 356 aa22.57■■□□□ 1.2
AP4E1-202ENST00000558439 ABCC8Q09428 1581 aa22.57■■□□□ 1.2
AP4E1-202ENST00000558439 CCDC88BA6NC98 1476 aa22.53■■□□□ 1.2
AP4E1-202ENST00000558439 FAM50AQ14320 339 aaKnown RBP22.52■■□□□ 1.2
AP4E1-202ENST00000558439 P3H3Q8IVL6 736 aa22.5■■□□□ 1.19
AP4E1-202ENST00000558439 WRNQ14191 1432 aaPredicted RBP eCLIP22.48■■□□□ 1.19
AP4E1-202ENST00000558439 TNIKQ9UKE5 1360 aa22.47■■□□□ 1.19
AP4E1-202ENST00000558439 CLIP1P30622 1438 aa22.45■■□□□ 1.18
AP4E1-202ENST00000558439 GOLGA3Q08378 1498 aa22.39■■□□□ 1.17
AP4E1-202ENST00000558439 EEA1Q15075 1411 aa22.36■■□□□ 1.17
AP4E1-202ENST00000558439 MIER1Q8N108 512 aa22.33■■□□□ 1.17
AP4E1-202ENST00000558439 RUSC2Q8N2Y8 1516 aa22.28■■□□□ 1.16
AP4E1-202ENST00000558439 BAZ1BQ9UIG0 1483 aaKnown RBP22.26■■□□□ 1.15
AP4E1-202ENST00000558439 NEFLP07196 543 aa22.23■■□□□ 1.15
AP4E1-202ENST00000558439 TOP2AP11388 1531 aaKnown RBP22.22■■□□□ 1.15
AP4E1-202ENST00000558439 CEP164Q9UPV0 1460 aa22.2■■□□□ 1.14
AP4E1-202ENST00000558439 CNGB1Q14028 1251 aaPredicted RBP22.16■■□□□ 1.14
AP4E1-202ENST00000558439 BCANQ96GW7 911 aa22.11■■□□□ 1.13
AP4E1-202ENST00000558439 SMARCA4P51532 1647 aa22.11■■□□□ 1.13
AP4E1-202ENST00000558439 ARID3CA6NKF2 412 aa22.11■■□□□ 1.13
AP4E1-202ENST00000558439 POLR3GLQ9BT43 218 aa22.06■■□□□ 1.12
AP4E1-202ENST00000558439 TRIM52Q96A61 297 aa22.05■■□□□ 1.12
AP4E1-202ENST00000558439 KANK4Q5T7N3 995 aaPredicted RBP22.03■■□□□ 1.12
AP4E1-202ENST00000558439 SMARCA2P51531 1590 aa22.01■■□□□ 1.11
AP4E1-202ENST00000558439 HIRIP3Q9BW71 556 aaPredicted RBP22■■□□□ 1.11
AP4E1-202ENST00000558439 DDX10Q13206 875 aaKnown RBP22■■□□□ 1.11
AP4E1-202ENST00000558439 VPS8Q8N3P4 1428 aa21.98■■□□□ 1.11
AP4E1-202ENST00000558439 KIF27Q86VH2 1401 aa21.94■■□□□ 1.1
AP4E1-202ENST00000558439 RAPGEF2Q9Y4G8 1499 aa21.93■■□□□ 1.1
AP4E1-202ENST00000558439 ANP32CO43423 234 aa21.9■■□□□ 1.1
AP4E1-202ENST00000558439 ATAD2BQ9ULI0 1458 aa21.89■■□□□ 1.1
AP4E1-202ENST00000558439 SIN3AQ96ST3 1273 aa21.83■■□□□ 1.08
AP4E1-202ENST00000558439 CHIC2Q9UKJ5 165 aa21.83■■□□□ 1.08
AP4E1-202ENST00000558439 ERICH6Q7L0X2 663 aa21.82■■□□□ 1.08
AP4E1-202ENST00000558439 FBLN2P98095 1184 aa21.77■■□□□ 1.08
AP4E1-202ENST00000558439 MYT1Q01538 1121 aa21.77■■□□□ 1.07
AP4E1-202ENST00000558439 CCNB3Q8WWL7 1395 aa21.76■■□□□ 1.07
AP4E1-202ENST00000558439 ZNF326Q5BKZ1 582 aaKnown RBP21.76■■□□□ 1.07
AP4E1-202ENST00000558439 CUX2O14529 1486 aa21.75■■□□□ 1.07
AP4E1-202ENST00000558439 TONSLQ96HA7 1378 aa21.75■■□□□ 1.07
AP4E1-202ENST00000558439 FKBP8Q14318 412 aa21.73■■□□□ 1.07
AP4E1-202ENST00000558439 CARMIL1Q5VZK9 1371 aa21.71■■□□□ 1.07
AP4E1-202ENST00000558439 MTUS2Q5JR59 1369 aa21.7■■□□□ 1.06
AP4E1-202ENST00000558439 CLSPNQ9HAW4 1339 aa21.66■■□□□ 1.06
AP4E1-202ENST00000558439 RRP7BPQ9NSQ0 103 aa21.66■■□□□ 1.06
AP4E1-202ENST00000558439 ZNF777Q9ULD5 760 aaPredicted RBP21.64■■□□□ 1.05
AP4E1-202ENST00000558439 SYNJ1O43426 1573 aa21.62■■□□□ 1.05
AP4E1-202ENST00000558439 DHX57Q6P158 1386 aaKnown RBP21.57■■□□□ 1.04
AP4E1-202ENST00000558439 HNRNPUQ00839 825 aaKnown RBP eCLIP21.57■■□□□ 1.04
AP4E1-202ENST00000558439 RAB3GAP2Q9H2M9 1393 aa21.56■■□□□ 1.04
AP4E1-202ENST00000558439 KIF21BO75037 1637 aa21.51■■□□□ 1.03
AP4E1-202ENST00000558439 SUPT16HQ9Y5B9 1047 aaKnown RBP21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms