RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 SYNJ1O43426 1573 aa19.59■□□□□ 0.73
SYNE2-221ENST00000556342 SYNJ2O15056 1496 aa19.56■□□□□ 0.72
SYNE2-221ENST00000556342 GAPVD1Q14C86 1478 aa19.51■□□□□ 0.71
SYNE2-221ENST00000556342 ABCA10Q8WWZ4 1543 aa19.47■□□□□ 0.71
SYNE2-221ENST00000556342 RNF39Q9H2S5 420 aa19.47■□□□□ 0.71
SYNE2-221ENST00000556342 PBRM1Q86U86 1689 aa19.46■□□□□ 0.71
SYNE2-221ENST00000556342 ABCA5Q8WWZ7 1642 aa19.44■□□□□ 0.7
SYNE2-221ENST00000556342 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.43■□□□□ 0.7
SYNE2-221ENST00000556342 GRIN2AQ12879 1464 aa19.35■□□□□ 0.69
SYNE2-221ENST00000556342 WRNQ14191 1432 aaPredicted RBP eCLIP19.35■□□□□ 0.69
SYNE2-221ENST00000556342 SUPT5HO00267 1087 aaKnown RBP19.35■□□□□ 0.69
SYNE2-221ENST00000556342 NUP160Q12769 1436 aa19.31■□□□□ 0.68
SYNE2-221ENST00000556342 ADAMTS12P58397 1594 aa19.31■□□□□ 0.68
SYNE2-221ENST00000556342 ERCC6L2Q5T890 1561 aa19.31■□□□□ 0.68
SYNE2-221ENST00000556342 CEP170Q5SW79 1584 aa19.28■□□□□ 0.68
SYNE2-221ENST00000556342 FHAD1B1AJZ9 1412 aa19.27■□□□□ 0.68
SYNE2-221ENST00000556342 TOP2BQ02880 1626 aa19.27■□□□□ 0.68
SYNE2-221ENST00000556342 SLC4A1APQ9BWU0 796 aaKnown RBP19.27■□□□□ 0.68
SYNE2-221ENST00000556342 BIVM-ERCC5R4GMW8 1640 aa19.25■□□□□ 0.67
SYNE2-221ENST00000556342 C1QBPQ07021 282 aaKnown RBP19.23■□□□□ 0.67
SYNE2-221ENST00000556342 ERICH3Q5RHP9 1530 aa19.21■□□□□ 0.67
SYNE2-221ENST00000556342 SLC4A2P04920 1241 aa19.21■□□□□ 0.67
SYNE2-221ENST00000556342 SHROOM2Q13796 1616 aa19.21■□□□□ 0.67
SYNE2-221ENST00000556342 CACNB1Q02641 598 aaPredicted RBP19.19■□□□□ 0.66
SYNE2-221ENST00000556342 PRG4Q92954 1404 aaPredicted RBP19.13■□□□□ 0.65
SYNE2-221ENST00000556342 JPH4Q96JJ6 628 aa19.11■□□□□ 0.65
SYNE2-221ENST00000556342 U3KPZ7 1027 aaPredicted RBP19.09■□□□□ 0.65
SYNE2-221ENST00000556342 RUSC2Q8N2Y8 1516 aa19.05■□□□□ 0.64
SYNE2-221ENST00000556342 KIF13AQ9H1H9 1805 aa19.01■□□□□ 0.63
SYNE2-221ENST00000556342 ABCC10Q5T3U5 1492 aa18.97■□□□□ 0.63
SYNE2-221ENST00000556342 NPM1P06748 294 aaKnown RBP eCLIP18.96■□□□□ 0.63
SYNE2-221ENST00000556342 FAM69CQ0P6D2 419 aa18.96■□□□□ 0.63
SYNE2-221ENST00000556342 MAPKBP1O60336 1514 aa18.95■□□□□ 0.62
SYNE2-221ENST00000556342 KIAA0586Q9BVV6 1533 aa18.95■□□□□ 0.62
SYNE2-221ENST00000556342 IGF1RP08069 1367 aa18.93■□□□□ 0.62
SYNE2-221ENST00000556342 ADCY10Q96PN6 1610 aa18.92■□□□□ 0.62
SYNE2-221ENST00000556342 KIF27Q86VH2 1401 aa18.91■□□□□ 0.62
SYNE2-221ENST00000556342 DIP2BQ9P265 1576 aa18.89■□□□□ 0.62
SYNE2-221ENST00000556342 CUL7Q14999 1698 aa18.88■□□□□ 0.61
SYNE2-221ENST00000556342 FOXD4L1Q9NU39 408 aa18.82■□□□□ 0.6
SYNE2-221ENST00000556342 PTPRGP23470 1445 aa18.81■□□□□ 0.6
SYNE2-221ENST00000556342 CARMIL1Q5VZK9 1371 aa18.81■□□□□ 0.6
SYNE2-221ENST00000556342 KDM6BO15054 1643 aa18.78■□□□□ 0.6
SYNE2-221ENST00000556342 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.77■□□□□ 0.6
SYNE2-221ENST00000556342 HNRNPUL2Q1KMD3 747 aaKnown RBP18.77■□□□□ 0.6
SYNE2-221ENST00000556342 TNIKQ9UKE5 1360 aa18.76■□□□□ 0.59
SYNE2-221ENST00000556342 CARMIL2Q6F5E8 1435 aa18.75■□□□□ 0.59
SYNE2-221ENST00000556342 MYCNP04198 464 aaPredicted RBP18.75■□□□□ 0.59
SYNE2-221ENST00000556342 TTBK1Q5TCY1 1321 aaPredicted RBP18.74■□□□□ 0.59
SYNE2-221ENST00000556342 ABCC2Q92887 1545 aa18.74■□□□□ 0.59
SYNE2-221ENST00000556342 KDM4FA0A1W2PPD8 638 aa18.71■□□□□ 0.59
SYNE2-221ENST00000556342 IQGAP2Q13576 1575 aa18.71■□□□□ 0.59
SYNE2-221ENST00000556342 TSPOAP1O95153 1857 aa18.71■□□□□ 0.59
SYNE2-221ENST00000556342 ASXL2Q76L83 1435 aa18.69■□□□□ 0.58
SYNE2-221ENST00000556342 UHRF1BP1LA0JNW5 1464 aa18.68■□□□□ 0.58
SYNE2-221ENST00000556342 PLB1Q6P1J6 1458 aa18.68■□□□□ 0.58
SYNE2-221ENST00000556342 APLP2Q06481 763 aa18.67■□□□□ 0.58
SYNE2-221ENST00000556342 SAMD1Q6SPF0 538 aaPredicted RBP18.67■□□□□ 0.58
SYNE2-221ENST00000556342 UACAQ9BZF9 1416 aa18.66■□□□□ 0.58
SYNE2-221ENST00000556342 DISP1Q96F81 1524 aa18.65■□□□□ 0.58
SYNE2-221ENST00000556342 GLI2P10070 1586 aa18.65■□□□□ 0.58
SYNE2-221ENST00000556342 ZBTB22O15209 634 aa18.65■□□□□ 0.58
SYNE2-221ENST00000556342 SPINK5Q9NQ38 1064 aaPredicted RBP18.63■□□□□ 0.57
SYNE2-221ENST00000556342 PPRC1Q5VV67 1664 aaKnown RBP18.6■□□□□ 0.57
SYNE2-221ENST00000556342 RAPGEF2Q9Y4G8 1499 aa18.6■□□□□ 0.57
SYNE2-221ENST00000556342 UGGT2Q9NYU1 1516 aa18.59■□□□□ 0.57
SYNE2-221ENST00000556342 KDM5BQ9UGL1 1544 aa18.59■□□□□ 0.57
SYNE2-221ENST00000556342 CAPN15O75808 1086 aa18.58■□□□□ 0.56
SYNE2-221ENST00000556342 EPRSP07814 1512 aaKnown RBP18.57■□□□□ 0.56
SYNE2-221ENST00000556342 KIAA0556O60303 1618 aa18.55■□□□□ 0.56
SYNE2-221ENST00000556342 COL17A1Q9UMD9 1497 aaPredicted RBP18.54■□□□□ 0.56
SYNE2-221ENST00000556342 MAP3K4Q9Y6R4 1608 aa18.52■□□□□ 0.56
SYNE2-221ENST00000556342 TEX14Q8IWB6 1497 aa18.52■□□□□ 0.55
SYNE2-221ENST00000556342 ZCCHC11Q5TAX3 1644 aaKnown RBP18.51■□□□□ 0.55
SYNE2-221ENST00000556342 ADGRL1O94910 1474 aa18.51■□□□□ 0.55
SYNE2-221ENST00000556342 WDR7Q9Y4E6 1490 aa18.47■□□□□ 0.55
SYNE2-221ENST00000556342 ZNF219Q9P2Y4 722 aaPredicted RBP18.45■□□□□ 0.54
SYNE2-221ENST00000556342 GOLGA3Q08378 1498 aa18.43■□□□□ 0.54
SYNE2-221ENST00000556342 CTTNBP2Q8WZ74 1663 aa18.4■□□□□ 0.54
SYNE2-221ENST00000556342 ABCA8O94911 1581 aa18.39■□□□□ 0.53
SYNE2-221ENST00000556342 DSG3P32926 999 aa18.39■□□□□ 0.53
SYNE2-221ENST00000556342 CD109Q6YHK3 1445 aa18.39■□□□□ 0.53
SYNE2-221ENST00000556342 MAGI3Q5TCQ9 1506 aa18.39■□□□□ 0.53
SYNE2-221ENST00000556342 PRXQ9BXM0 1461 aa18.37■□□□□ 0.53
SYNE2-221ENST00000556342 KCNH8Q96L42 1107 aa18.36■□□□□ 0.53
SYNE2-221ENST00000556342 ILDR1Q86SU0 546 aaPredicted RBP18.35■□□□□ 0.53
SYNE2-221ENST00000556342 CFAP43Q8NDM7 1665 aa18.33■□□□□ 0.52
SYNE2-221ENST00000556342 HECW2Q9P2P5 1572 aa18.3■□□□□ 0.52
SYNE2-221ENST00000556342 ARID3CA6NKF2 412 aa18.26■□□□□ 0.51
SYNE2-221ENST00000556342 CSRNP3Q8WYN3 585 aa18.26■□□□□ 0.51
SYNE2-221ENST00000556342 P3H3Q8IVL6 736 aa18.25■□□□□ 0.51
SYNE2-221ENST00000556342 FAM9AQ8IZU1 332 aaPredicted RBP18.25■□□□□ 0.51
SYNE2-221ENST00000556342 ATP10BO94823 1461 aa18.25■□□□□ 0.51
SYNE2-221ENST00000556342 ARAP3Q8WWN8 1544 aa18.24■□□□□ 0.51
SYNE2-221ENST00000556342 ATXN8OSP0DMR3 200 aa18.24■□□□□ 0.51
SYNE2-221ENST00000556342 EHMT2Q96KQ7 1210 aa18.24■□□□□ 0.51
SYNE2-221ENST00000556342 ATF5Q9Y2D1 282 aaPredicted RBP18.22■□□□□ 0.51
SYNE2-221ENST00000556342 KIF21BO75037 1637 aa18.2■□□□□ 0.5
SYNE2-221ENST00000556342 PHLDB1Q86UU1 1377 aa18.18■□□□□ 0.5
SYNE2-221ENST00000556342 ABCA9Q8IUA7 1624 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms