RNA–Protein interactions for RNA: ENST00000556272.1

PCNX1-211, Transcript of pecanex 1, humanhuman

TSL 2

Gene PCNX1, Length 2,942 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX1-211ENST00000556272 GOLGA3Q08378 1498 aa11.21□□□□□ -0.61
PCNX1-211ENST00000556272 HMGXB3Q12766 1538 aa11.19□□□□□ -0.62
PCNX1-211ENST00000556272 NCAPD3P42695 1498 aa11.19□□□□□ -0.62
PCNX1-211ENST00000556272 SOGA1O94964 1423 aa11.17□□□□□ -0.62
PCNX1-211ENST00000556272 CEP164Q9UPV0 1460 aa11.16□□□□□ -0.62
PCNX1-211ENST00000556272 BBXQ8WY36 941 aaPredicted RBP11.15□□□□□ -0.62
PCNX1-211ENST00000556272 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.15□□□□□ -0.63
PCNX1-211ENST00000556272 SYNJ1O43426 1573 aa11.14□□□□□ -0.63
PCNX1-211ENST00000556272 PLEKHG5O94827 1062 aa11.12□□□□□ -0.63
PCNX1-211ENST00000556272 BIVM-ERCC5R4GMW8 1640 aa11.11□□□□□ -0.63
PCNX1-211ENST00000556272 TOP2BQ02880 1626 aa11.11□□□□□ -0.63
PCNX1-211ENST00000556272 RUSC2Q8N2Y8 1516 aa11.09□□□□□ -0.63
PCNX1-211ENST00000556272 TRHP20396 242 aaPredicted RBP11.05□□□□□ -0.64
PCNX1-211ENST00000556272 ERICH3Q5RHP9 1530 aa11.05□□□□□ -0.64
PCNX1-211ENST00000556272 IFNLR1Q8IU57 520 aaPredicted RBP11.02□□□□□ -0.64
PCNX1-211ENST00000556272 CCER1Q8TC90 406 aaPredicted RBP11.02□□□□□ -0.64
PCNX1-211ENST00000556272 CNKSR2Q8WXI2 1034 aa11.02□□□□□ -0.64
PCNX1-211ENST00000556272 VPS8Q8N3P4 1428 aa11.02□□□□□ -0.65
PCNX1-211ENST00000556272 PRDM2Q13029 1718 aa11.01□□□□□ -0.65
PCNX1-211ENST00000556272 CLIP1P30622 1438 aa11.01□□□□□ -0.65
PCNX1-211ENST00000556272 FOXD1Q16676 465 aa11□□□□□ -0.65
PCNX1-211ENST00000556272 CUX2O14529 1486 aa11□□□□□ -0.65
PCNX1-211ENST00000556272 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.97□□□□□ -0.65
PCNX1-211ENST00000556272 PRXQ9BXM0 1461 aa10.96□□□□□ -0.66
PCNX1-211ENST00000556272 SPRYD3Q8NCJ5 442 aa10.95□□□□□ -0.66
PCNX1-211ENST00000556272 RAPGEF2Q9Y4G8 1499 aa10.95□□□□□ -0.66
PCNX1-211ENST00000556272 ATXN8OSP0DMR3 200 aa10.95□□□□□ -0.66
PCNX1-211ENST00000556272 IGSF3O75054 1194 aa10.93□□□□□ -0.66
PCNX1-211ENST00000556272 CFTRP13569 1480 aa10.92□□□□□ -0.66
PCNX1-211ENST00000556272 VASPP50552 380 aaPredicted RBP10.91□□□□□ -0.66
PCNX1-211ENST00000556272 BRPF1P55201 1214 aaPredicted RBP10.91□□□□□ -0.66
PCNX1-211ENST00000556272 SLC4A2P04920 1241 aa10.9□□□□□ -0.66
PCNX1-211ENST00000556272 CUX1P39880 1505 aa10.89□□□□□ -0.67
PCNX1-211ENST00000556272 CADPSQ9ULU8 1353 aa10.89□□□□□ -0.67
PCNX1-211ENST00000556272 KIF27Q86VH2 1401 aa10.88□□□□□ -0.67
PCNX1-211ENST00000556272 CLSPNQ9HAW4 1339 aa10.87□□□□□ -0.67
PCNX1-211ENST00000556272 ARID3AQ99856 593 aa10.86□□□□□ -0.67
PCNX1-211ENST00000556272 LAMC3Q9Y6N6 1575 aa10.86□□□□□ -0.67
PCNX1-211ENST00000556272 NESP48681 1621 aa10.85□□□□□ -0.67
PCNX1-211ENST00000556272 ARAP1Q96P48 1450 aa10.85□□□□□ -0.67
PCNX1-211ENST00000556272 DIEXFQ68CQ4 756 aaKnown RBP10.85□□□□□ -0.67
PCNX1-211ENST00000556272 NECTIN2Q92692 538 aa10.84□□□□□ -0.67
PCNX1-211ENST00000556272 CCDC9Q9Y3X0 531 aaKnown RBP10.84□□□□□ -0.67
PCNX1-211ENST00000556272 ZNF316A6NFI3 1004 aaPredicted RBP10.82□□□□□ -0.68
PCNX1-211ENST00000556272 SCAF1Q9H7N4 1312 aaKnown RBP10.82□□□□□ -0.68
PCNX1-211ENST00000556272 MAP3K1Q13233 1512 aa10.82□□□□□ -0.68
PCNX1-211ENST00000556272 CENPBP07199 599 aaPredicted RBP10.81□□□□□ -0.68
PCNX1-211ENST00000556272 C1orf115Q9H7X2 142 aa10.81□□□□□ -0.68
PCNX1-211ENST00000556272 ACIN1Q9UKV3 1341 aaKnown RBP10.81□□□□□ -0.68
PCNX1-211ENST00000556272 RRBP1Q9P2E9 1410 aaKnown RBP10.8□□□□□ -0.68
PCNX1-211ENST00000556272 FANCD2Q9BXW9 1451 aa10.79□□□□□ -0.68
PCNX1-211ENST00000556272 CHMP4AQ9BY43 222 aa10.77□□□□□ -0.69
PCNX1-211ENST00000556272 KIF21AQ7Z4S6 1674 aa10.77□□□□□ -0.69
PCNX1-211ENST00000556272 ARHGAP35Q9NRY4 1499 aa10.75□□□□□ -0.69
PCNX1-211ENST00000556272 RGL2O15211 777 aa10.75□□□□□ -0.69
PCNX1-211ENST00000556272 PDS5BQ9NTI5 1447 aa10.75□□□□□ -0.69
PCNX1-211ENST00000556272 ECM2O94769 699 aaPredicted RBP10.72□□□□□ -0.69
PCNX1-211ENST00000556272 SAMD1Q6SPF0 538 aaPredicted RBP10.72□□□□□ -0.69
PCNX1-211ENST00000556272 HNRNPUL2Q1KMD3 747 aaKnown RBP10.71□□□□□ -0.69
PCNX1-211ENST00000556272 TIAM1Q13009 1591 aa10.71□□□□□ -0.7
PCNX1-211ENST00000556272 CFAP43Q8NDM7 1665 aa10.7□□□□□ -0.7
PCNX1-211ENST00000556272 DHX57Q6P158 1386 aaKnown RBP10.7□□□□□ -0.7
PCNX1-211ENST00000556272 ATF5Q9Y2D1 282 aaPredicted RBP10.7□□□□□ -0.7
PCNX1-211ENST00000556272 IGF1RP08069 1367 aa10.7□□□□□ -0.7
PCNX1-211ENST00000556272 MYCNP04198 464 aaPredicted RBP10.69□□□□□ -0.7
PCNX1-211ENST00000556272 NEUROD1Q13562 356 aa10.69□□□□□ -0.7
PCNX1-211ENST00000556272 ZMYND15Q9H091 742 aa10.69□□□□□ -0.7
PCNX1-211ENST00000556272 FGD5Q6ZNL6 1462 aa10.69□□□□□ -0.7
PCNX1-211ENST00000556272 DNMBPQ6XZF7 1577 aa10.68□□□□□ -0.7
PCNX1-211ENST00000556272 ZBTB7CA1YPR0 619 aa10.68□□□□□ -0.7
PCNX1-211ENST00000556272 CDK11BP21127 795 aaKnown RBP10.68□□□□□ -0.7
PCNX1-211ENST00000556272 CDK11AQ9UQ88 783 aaPredicted RBP10.68□□□□□ -0.7
PCNX1-211ENST00000556272 CUL7Q14999 1698 aa10.68□□□□□ -0.7
PCNX1-211ENST00000556272 CCNB3Q8WWL7 1395 aa10.67□□□□□ -0.7
PCNX1-211ENST00000556272 EFCAB5A4FU69 1503 aa10.67□□□□□ -0.7
PCNX1-211ENST00000556272 FHAD1B1AJZ9 1412 aa10.67□□□□□ -0.7
PCNX1-211ENST00000556272 URB2Q14146 1524 aaKnown RBP10.66□□□□□ -0.7
PCNX1-211ENST00000556272 TOPBP1Q92547 1522 aa10.66□□□□□ -0.7
PCNX1-211ENST00000556272 ABCA10Q8WWZ4 1543 aa10.65□□□□□ -0.7
PCNX1-211ENST00000556272 CARMIL1Q5VZK9 1371 aa10.65□□□□□ -0.7
PCNX1-211ENST00000556272 RSPH6AQ9H0K4 717 aa10.65□□□□□ -0.7
PCNX1-211ENST00000556272 ERCC6Q03468 1493 aa10.65□□□□□ -0.7
PCNX1-211ENST00000556272 MAPK8IP2Q13387 824 aaPredicted RBP10.64□□□□□ -0.71
PCNX1-211ENST00000556272 PIAS4Q8N2W9 510 aaPredicted RBP10.64□□□□□ -0.71
PCNX1-211ENST00000556272 AQRO60306 1485 aaKnown RBP eCLIP10.64□□□□□ -0.71
PCNX1-211ENST00000556272 CTTNBP2Q8WZ74 1663 aa10.63□□□□□ -0.71
PCNX1-211ENST00000556272 NEUROD2Q15784 382 aa10.63□□□□□ -0.71
PCNX1-211ENST00000556272 MRC2Q9UBG0 1479 aa10.63□□□□□ -0.71
PCNX1-211ENST00000556272 KANK4Q5T7N3 995 aaPredicted RBP10.63□□□□□ -0.71
PCNX1-211ENST00000556272 LRRC9Q6ZRR7 1453 aa10.63□□□□□ -0.71
PCNX1-211ENST00000556272 WDR97A6NE52 1622 aa10.62□□□□□ -0.71
PCNX1-211ENST00000556272 FYCO1Q9BQS8 1478 aa10.61□□□□□ -0.71
PCNX1-211ENST00000556272 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.61□□□□□ -0.71
PCNX1-211ENST00000556272 ARID3CA6NKF2 412 aa10.61□□□□□ -0.71
PCNX1-211ENST00000556272 POLA1P09884 1462 aaPredicted RBP10.6□□□□□ -0.71
PCNX1-211ENST00000556272 PDIA4P13667 645 aaKnown RBP10.6□□□□□ -0.71
PCNX1-211ENST00000556272 THOC2Q8NI27 1593 aaKnown RBP10.6□□□□□ -0.71
PCNX1-211ENST00000556272 CHGAP10645 457 aaKnown RBP10.59□□□□□ -0.71
PCNX1-211ENST00000556272 WDR62O43379 1518 aa10.59□□□□□ -0.71
PCNX1-211ENST00000556272 PCF11O94913 1555 aaKnown RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms