RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 HNRNPUQ00839 825 aaKnown RBP eCLIP20.76■□□□□ 0.91
CUX1-215ENST00000556210 DHX57Q6P158 1386 aaKnown RBP20.76■□□□□ 0.91
CUX1-215ENST00000556210 FOXD1Q16676 465 aa20.75■□□□□ 0.91
CUX1-215ENST00000556210 BICRAQ9NZM4 1560 aa20.75■□□□□ 0.91
CUX1-215ENST00000556210 FAM9BQ8IZU0 186 aa20.75■□□□□ 0.91
CUX1-215ENST00000556210 FHOD3Q2V2M9 1422 aa20.73■□□□□ 0.91
CUX1-215ENST00000556210 CADPSQ9ULU8 1353 aa20.73■□□□□ 0.91
CUX1-215ENST00000556210 KIF21BO75037 1637 aa20.71■□□□□ 0.91
CUX1-215ENST00000556210 CLSPNQ9HAW4 1339 aa20.7■□□□□ 0.9
CUX1-215ENST00000556210 SUPT16HQ9Y5B9 1047 aaKnown RBP20.7■□□□□ 0.9
CUX1-215ENST00000556210 IGF1RP08069 1367 aa20.69■□□□□ 0.9
CUX1-215ENST00000556210 ARAP1Q96P48 1450 aa20.67■□□□□ 0.9
CUX1-215ENST00000556210 DNAJC5BQ9UF47 199 aa20.66■□□□□ 0.9
CUX1-215ENST00000556210 KDM2AQ9Y2K7 1162 aa20.64■□□□□ 0.9
CUX1-215ENST00000556210 SALL2Q9Y467 1007 aaPredicted RBP20.63■□□□□ 0.89
CUX1-215ENST00000556210 CHMP7Q8WUX9 453 aaPredicted RBP20.63■□□□□ 0.89
CUX1-215ENST00000556210 RAD54L2Q9Y4B4 1467 aa20.62■□□□□ 0.89
CUX1-215ENST00000556210 SETD5Q9C0A6 1442 aa20.61■□□□□ 0.89
CUX1-215ENST00000556210 SLC4A1APQ9BWU0 796 aaKnown RBP20.61■□□□□ 0.89
CUX1-215ENST00000556210 EIF4G1Q04637 1599 aaKnown RBP20.58■□□□□ 0.89
CUX1-215ENST00000556210 CDK11AQ9UQ88 783 aaPredicted RBP20.58■□□□□ 0.89
CUX1-215ENST00000556210 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.57■□□□□ 0.881e-6■■□□□ 14.2
CUX1-215ENST00000556210 UNC13AQ9UPW8 1703 aa20.57■□□□□ 0.88
CUX1-215ENST00000556210 FHAD1B1AJZ9 1412 aa20.55■□□□□ 0.88
CUX1-215ENST00000556210 FGD5Q6ZNL6 1462 aa20.54■□□□□ 0.88
CUX1-215ENST00000556210 NCAPD3P42695 1498 aa20.54■□□□□ 0.88
CUX1-215ENST00000556210 PHLDB1Q86UU1 1377 aa20.53■□□□□ 0.88
CUX1-215ENST00000556210 CUX1P39880 1505 aa20.51■□□□□ 0.87
CUX1-215ENST00000556210 MRS2Q9HD23 443 aa20.51■□□□□ 0.87
CUX1-215ENST00000556210 FANCD2Q9BXW9 1451 aa20.5■□□□□ 0.87
CUX1-215ENST00000556210 EIF4G2P78344 907 aaKnown RBP eCLIP20.5■□□□□ 0.871e-6■■■■■ 34
CUX1-215ENST00000556210 ANP32EQ9BTT0 268 aa20.5■□□□□ 0.87
CUX1-215ENST00000556210 ARHGAP35Q9NRY4 1499 aa20.49■□□□□ 0.87
CUX1-215ENST00000556210 PRXQ9BXM0 1461 aa20.48■□□□□ 0.87
CUX1-215ENST00000556210 NESP48681 1621 aa20.48■□□□□ 0.87
CUX1-215ENST00000556210 PPP1R15AO75807 674 aaPredicted RBP20.48■□□□□ 0.87
CUX1-215ENST00000556210 CFDP1Q9UEE9 299 aaPredicted RBP20.46■□□□□ 0.87
CUX1-215ENST00000556210 RGL3Q3MIN7 710 aa20.45■□□□□ 0.86
CUX1-215ENST00000556210 TSHZ2Q9NRE2 1034 aa20.44■□□□□ 0.86
CUX1-215ENST00000556210 CFTRP13569 1480 aa20.43■□□□□ 0.86
CUX1-215ENST00000556210 SENP3Q9H4L4 574 aaPredicted RBP20.41■□□□□ 0.86
CUX1-215ENST00000556210 TOP2BQ02880 1626 aa20.4■□□□□ 0.86
CUX1-215ENST00000556210 HSPA5P11021 654 aaKnown RBP20.39■□□□□ 0.85
CUX1-215ENST00000556210 TSPY4P0CV99 314 aa20.37■□□□□ 0.85
CUX1-215ENST00000556210 TSPY10P0CW01 314 aa20.37■□□□□ 0.85
CUX1-215ENST00000556210 L3MBTL2Q969R5 705 aa20.33■□□□□ 0.85
CUX1-215ENST00000556210 MPHOSPH9Q99550 1183 aa20.33■□□□□ 0.85
CUX1-215ENST00000556210 PLEKHD1A6NEE1 506 aa20.32■□□□□ 0.84
CUX1-215ENST00000556210 ZNF644Q9H582 1327 aaPredicted RBP20.32■□□□□ 0.84
CUX1-215ENST00000556210 TMC1Q8TDI8 760 aa20.3■□□□□ 0.84
CUX1-215ENST00000556210 FMN1Q68DA7 1419 aa20.29■□□□□ 0.84
CUX1-215ENST00000556210 LRRC9Q6ZRR7 1453 aa20.28■□□□□ 0.84
CUX1-215ENST00000556210 PDS5BQ9NTI5 1447 aa20.26■□□□□ 0.83
CUX1-215ENST00000556210 RRBP1Q9P2E9 1410 aaKnown RBP20.25■□□□□ 0.83
CUX1-215ENST00000556210 ERICH3Q5RHP9 1530 aa20.24■□□□□ 0.83
CUX1-215ENST00000556210 AQRO60306 1485 aaKnown RBP eCLIP20.23■□□□□ 0.834e-7■■■■□ 26.1
CUX1-215ENST00000556210 PEG3Q9GZU2 1588 aa20.22■□□□□ 0.83
CUX1-215ENST00000556210 PKD2Q13563 968 aa20.22■□□□□ 0.83
CUX1-215ENST00000556210 CHGAP10645 457 aaKnown RBP20.2■□□□□ 0.82
CUX1-215ENST00000556210 CARD11Q9BXL7 1154 aa20.2■□□□□ 0.82
CUX1-215ENST00000556210 ERCC6Q03468 1493 aa20.19■□□□□ 0.82
CUX1-215ENST00000556210 TIMELESSQ9UNS1 1208 aa20.19■□□□□ 0.82
CUX1-215ENST00000556210 RBM19Q9Y4C8 960 aaKnown RBP20.19■□□□□ 0.82
CUX1-215ENST00000556210 B4GALNT3Q6L9W6 998 aa20.18■□□□□ 0.82
CUX1-215ENST00000556210 NPM2Q86SE8 214 aaKnown RBP20.18■□□□□ 0.82
CUX1-215ENST00000556210 DCAF11Q8TEB1 546 aa20.18■□□□□ 0.82
CUX1-215ENST00000556210 BCL11AQ9H165 835 aa20.18■□□□□ 0.82
CUX1-215ENST00000556210 GAPVD1Q14C86 1478 aa20.16■□□□□ 0.82
CUX1-215ENST00000556210 POLA1P09884 1462 aaPredicted RBP20.16■□□□□ 0.82
CUX1-215ENST00000556210 CC2D2AQ9P2K1 1620 aa20.14■□□□□ 0.82
CUX1-215ENST00000556210 FGD6Q6ZV73 1430 aa20.14■□□□□ 0.82
CUX1-215ENST00000556210 CCDC18Q5T9S5 1454 aa20.14■□□□□ 0.81
CUX1-215ENST00000556210 HMGXB3Q12766 1538 aa20.14■□□□□ 0.81
CUX1-215ENST00000556210 HNRNPMP52272 730 aaKnown RBP eCLIP20.13■□□□□ 0.819e-7■■■□□ 19.2
CUX1-215ENST00000556210 CCDC136Q96JN2 1154 aa20.11■□□□□ 0.81
CUX1-215ENST00000556210 CCER2I3L3R5 266 aa20.1■□□□□ 0.81
CUX1-215ENST00000556210 TOPBP1Q92547 1522 aa20.09■□□□□ 0.81
CUX1-215ENST00000556210 JPH4Q96JJ6 628 aa20.08■□□□□ 0.81
CUX1-215ENST00000556210 WDR97A6NE52 1622 aa20.06■□□□□ 0.8
CUX1-215ENST00000556210 CC2D1BQ5T0F9 858 aaKnown RBP20.05■□□□□ 0.8
CUX1-215ENST00000556210 TIAM1Q13009 1591 aa20.04■□□□□ 0.8
CUX1-215ENST00000556210 CCDC184Q52MB2 194 aa20.03■□□□□ 0.8
CUX1-215ENST00000556210 CASKIN1Q8WXD9 1431 aa20.03■□□□□ 0.8
CUX1-215ENST00000556210 NCOA2Q15596 1464 aa20.03■□□□□ 0.8
CUX1-215ENST00000556210 NUP155O75694 1391 aa20.03■□□□□ 0.8
CUX1-215ENST00000556210 WASHC2AQ641Q2 1341 aa20.01■□□□□ 0.79
CUX1-215ENST00000556210 NBR1Q14596 966 aa20■□□□□ 0.79
CUX1-215ENST00000556210 RTL5Q5HYW3 569 aaPredicted RBP20■□□□□ 0.79
CUX1-215ENST00000556210 MYOM3Q5VTT5 1437 aa20■□□□□ 0.79
CUX1-215ENST00000556210 DAXXQ9UER7 740 aaPredicted RBP19.97■□□□□ 0.79
CUX1-215ENST00000556210 NBPF8Q3BBV2 869 aa19.96■□□□□ 0.79
CUX1-215ENST00000556210 BIVM-ERCC5R4GMW8 1640 aa19.95■□□□□ 0.78
CUX1-215ENST00000556210 PCF11O94913 1555 aaKnown RBP19.95■□□□□ 0.78
CUX1-215ENST00000556210 PRKRIP1Q9H875 184 aaPredicted RBP19.94■□□□□ 0.78
CUX1-215ENST00000556210 UACAQ9BZF9 1416 aa19.93■□□□□ 0.78
CUX1-215ENST00000556210 ST20-MTHFSA0A0A6YYL1 179 aa19.93■□□□□ 0.78
CUX1-215ENST00000556210 C11orf95C9JLR9 678 aaPredicted RBP19.92■□□□□ 0.78
CUX1-215ENST00000556210 FYCO1Q9BQS8 1478 aa19.89■□□□□ 0.78
CUX1-215ENST00000556210 PTPRKQ15262 1439 aa19.89■□□□□ 0.77
CUX1-215ENST00000556210 TNNT2P45379 298 aaPredicted RBP19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms