RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 CUX2O14529 1486 aa22.16■■□□□ 1.14
SYNE3-203ENST00000554873 DEKP35659 375 aaKnown RBP22.15■■□□□ 1.14
SYNE3-203ENST00000554873 CFTRP13569 1480 aa22.13■■□□□ 1.13
SYNE3-203ENST00000554873 ITGAEP38570 1179 aa22.12■■□□□ 1.13
SYNE3-203ENST00000554873 KCNH8Q96L42 1107 aa22.05■■□□□ 1.12
SYNE3-203ENST00000554873 ERICH6BQ5W0A0 696 aa22.04■■□□□ 1.12
SYNE3-203ENST00000554873 IGF1RP08069 1367 aa22.04■■□□□ 1.12
SYNE3-203ENST00000554873 RAB3GAP2Q9H2M9 1393 aa22.02■■□□□ 1.12
SYNE3-203ENST00000554873 MAPKBP1O60336 1514 aa21.96■■□□□ 1.11
SYNE3-203ENST00000554873 TIAM1Q13009 1591 aa21.95■■□□□ 1.1
SYNE3-203ENST00000554873 MAP3K1Q13233 1512 aa21.94■■□□□ 1.1
SYNE3-203ENST00000554873 CARMIL1Q5VZK9 1371 aa21.93■■□□□ 1.1
SYNE3-203ENST00000554873 CDK11AQ9UQ88 783 aaPredicted RBP21.92■■□□□ 1.1
SYNE3-203ENST00000554873 SALL2Q9Y467 1007 aaPredicted RBP21.92■■□□□ 1.1
SYNE3-203ENST00000554873 SETD5Q9C0A6 1442 aa21.92■■□□□ 1.1
SYNE3-203ENST00000554873 LRRC9Q6ZRR7 1453 aa21.89■■□□□ 1.1
SYNE3-203ENST00000554873 PHLDB1Q86UU1 1377 aa21.89■■□□□ 1.09
SYNE3-203ENST00000554873 PRDM2Q13029 1718 aa21.87■■□□□ 1.09
SYNE3-203ENST00000554873 UBE2Q2Q8WVN8 375 aa21.85■■□□□ 1.09
SYNE3-203ENST00000554873 SIN3AQ96ST3 1273 aa21.85■■□□□ 1.09
SYNE3-203ENST00000554873 CADPSQ9ULU8 1353 aa21.85■■□□□ 1.09
SYNE3-203ENST00000554873 FAM50AQ14320 339 aaKnown RBP21.84■■□□□ 1.09
SYNE3-203ENST00000554873 FGD5Q6ZNL6 1462 aa21.84■■□□□ 1.09
SYNE3-203ENST00000554873 P3H3Q8IVL6 736 aa21.81■■□□□ 1.08
SYNE3-203ENST00000554873 WDR97A6NE52 1622 aa21.8■■□□□ 1.08
SYNE3-203ENST00000554873 FHAD1B1AJZ9 1412 aa21.79■■□□□ 1.08
SYNE3-203ENST00000554873 DDX10Q13206 875 aaKnown RBP21.79■■□□□ 1.08
SYNE3-203ENST00000554873 ATP1B4Q9UN42 357 aaPredicted RBP21.77■■□□□ 1.08
SYNE3-203ENST00000554873 PCF11O94913 1555 aaKnown RBP21.73■■□□□ 1.07
SYNE3-203ENST00000554873 TIMELESSQ9UNS1 1208 aa21.72■■□□□ 1.07
SYNE3-203ENST00000554873 CFAP43Q8NDM7 1665 aa21.72■■□□□ 1.07
SYNE3-203ENST00000554873 CCDC136Q96JN2 1154 aa21.72■■□□□ 1.07
SYNE3-203ENST00000554873 PPP1R15AO75807 674 aaPredicted RBP21.71■■□□□ 1.07
SYNE3-203ENST00000554873 TRIM52Q96A61 297 aa21.71■■□□□ 1.07
SYNE3-203ENST00000554873 CCER2I3L3R5 266 aa21.71■■□□□ 1.07
SYNE3-203ENST00000554873 NOP58Q9Y2X3 529 aaKnown RBP21.69■■□□□ 1.06
SYNE3-203ENST00000554873 FHOD3Q2V2M9 1422 aa21.69■■□□□ 1.06
SYNE3-203ENST00000554873 NBR1Q14596 966 aa21.67■■□□□ 1.06
SYNE3-203ENST00000554873 HIRIP3Q9BW71 556 aaPredicted RBP21.66■■□□□ 1.06
SYNE3-203ENST00000554873 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.62■■□□□ 1.05
SYNE3-203ENST00000554873 FYCO1Q9BQS8 1478 aa21.62■■□□□ 1.05
SYNE3-203ENST00000554873 RAD54L2Q9Y4B4 1467 aa21.62■■□□□ 1.05
SYNE3-203ENST00000554873 CASKIN1Q8WXD9 1431 aa21.62■■□□□ 1.05
SYNE3-203ENST00000554873 FANCD2Q9BXW9 1451 aa21.62■■□□□ 1.05
SYNE3-203ENST00000554873 IL27Q8NEV9 243 aa21.59■■□□□ 1.05
SYNE3-203ENST00000554873 AQRO60306 1485 aaKnown RBP eCLIP21.58■■□□□ 1.045e-6■■□□□ 14.3
SYNE3-203ENST00000554873 EFCAB5A4FU69 1503 aa21.57■■□□□ 1.04
SYNE3-203ENST00000554873 ABCA10Q8WWZ4 1543 aa21.57■■□□□ 1.04
SYNE3-203ENST00000554873 RTL5Q5HYW3 569 aaPredicted RBP21.56■■□□□ 1.04
SYNE3-203ENST00000554873 ANP32CO43423 234 aa21.54■■□□□ 1.04
SYNE3-203ENST00000554873 PAK3O75914 559 aaPredicted RBP21.54■■□□□ 1.04
SYNE3-203ENST00000554873 PPP4R2Q9NY27 417 aa21.54■■□□□ 1.04
SYNE3-203ENST00000554873 FGD6Q6ZV73 1430 aa21.54■■□□□ 1.04
SYNE3-203ENST00000554873 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.53■■□□□ 1.04
SYNE3-203ENST00000554873 POLA1P09884 1462 aaPredicted RBP21.53■■□□□ 1.04
SYNE3-203ENST00000554873 DNMBPQ6XZF7 1577 aa21.53■■□□□ 1.04
SYNE3-203ENST00000554873 TOPBP1Q92547 1522 aa21.51■■□□□ 1.03
SYNE3-203ENST00000554873 IRX6P78412 446 aaPredicted RBP21.51■■□□□ 1.03
SYNE3-203ENST00000554873 PTPRKQ15262 1439 aa21.5■■□□□ 1.03
SYNE3-203ENST00000554873 FMN1Q68DA7 1419 aa21.5■■□□□ 1.03
SYNE3-203ENST00000554873 TONSLQ96HA7 1378 aa21.49■■□□□ 1.03
SYNE3-203ENST00000554873 RTN4Q9NQC3 1192 aaKnown RBP21.48■■□□□ 1.03
SYNE3-203ENST00000554873 CC2D2AQ9P2K1 1620 aa21.48■■□□□ 1.03
SYNE3-203ENST00000554873 CCDC18Q5T9S5 1454 aa21.48■■□□□ 1.03
SYNE3-203ENST00000554873 MTUS2Q5JR59 1369 aa21.47■■□□□ 1.03
SYNE3-203ENST00000554873 CUL7Q14999 1698 aa21.46■■□□□ 1.03
SYNE3-203ENST00000554873 CTTNBP2Q8WZ74 1663 aa21.46■■□□□ 1.03
SYNE3-203ENST00000554873 SNAPC4Q5SXM2 1469 aa21.46■■□□□ 1.03
SYNE3-203ENST00000554873 HFM1A2PYH4 1435 aa21.45■■□□□ 1.03
SYNE3-203ENST00000554873 UACAQ9BZF9 1416 aa21.45■■□□□ 1.02
SYNE3-203ENST00000554873 NESP48681 1621 aa21.41■■□□□ 1.02
SYNE3-203ENST00000554873 PTPN23Q9H3S7 1636 aa21.41■■□□□ 1.02
SYNE3-203ENST00000554873 NAIPQ13075 1403 aa21.39■■□□□ 1.02
SYNE3-203ENST00000554873 IPO9Q96P70 1041 aaKnown RBP21.38■■□□□ 1.01
SYNE3-203ENST00000554873 NCOA2Q15596 1464 aa21.37■■□□□ 1.01
SYNE3-203ENST00000554873 MYOM3Q5VTT5 1437 aa21.36■■□□□ 1.01
SYNE3-203ENST00000554873 HNRNPUQ00839 825 aaKnown RBP eCLIP21.36■■□□□ 1.01
SYNE3-203ENST00000554873 WASHC2AQ641Q2 1341 aa21.36■■□□□ 1.01
SYNE3-203ENST00000554873 LRRIQ1Q96JM4 1722 aa21.35■■□□□ 1.01
SYNE3-203ENST00000554873 ANP32AP39687 249 aaKnown RBP21.35■■□□□ 1.01
SYNE3-203ENST00000554873 TDRD9Q8NDG6 1382 aaKnown RBP21.34■■□□□ 1.01
SYNE3-203ENST00000554873 C11orf95C9JLR9 678 aaPredicted RBP21.34■■□□□ 1.01
SYNE3-203ENST00000554873 SAMD9Q5K651 1589 aa21.34■■□□□ 1.01
SYNE3-203ENST00000554873 GRIN2BQ13224 1484 aa21.33■■□□□ 1.01
SYNE3-203ENST00000554873 ZBTB47Q9UFB7 747 aaPredicted RBP21.33■■□□□ 1.01
SYNE3-203ENST00000554873 KDM5BQ9UGL1 1544 aa21.32■■□□□ 1
SYNE3-203ENST00000554873 B4GALNT3Q6L9W6 998 aa21.31■■□□□ 1
SYNE3-203ENST00000554873 URB2Q14146 1524 aaKnown RBP21.3■■□□□ 1
SYNE3-203ENST00000554873 RRP7BPQ9NSQ0 103 aa21.28■■□□□ 1
SYNE3-203ENST00000554873 SUPT6HQ7KZ85 1726 aaKnown RBP21.27■■□□□ 1
SYNE3-203ENST00000554873 GAPVD1Q14C86 1478 aa21.26■□□□□ 0.99
SYNE3-203ENST00000554873 CHIC2Q9UKJ5 165 aa21.25■□□□□ 0.99
SYNE3-203ENST00000554873 WASHC2CQ9Y4E1 1318 aa21.25■□□□□ 0.99
SYNE3-203ENST00000554873 EHBP1L1Q8N3D4 1523 aa21.25■□□□□ 0.99
SYNE3-203ENST00000554873 USP35Q9P2H5 1018 aa21.24■□□□□ 0.99
SYNE3-203ENST00000554873 ABCA5Q8WWZ7 1642 aa21.24■□□□□ 0.99
SYNE3-203ENST00000554873 PKNOX2Q96KN3 472 aa21.24■□□□□ 0.99
SYNE3-203ENST00000554873 THOC2Q8NI27 1593 aaKnown RBP21.24■□□□□ 0.99
SYNE3-203ENST00000554873 UGGT2Q9NYU1 1516 aa21.24■□□□□ 0.99
SYNE3-203ENST00000554873 HSPA5P11021 654 aaKnown RBP21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms