RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 ACIN1Q9UKV3 1341 aaKnown RBP8.15□□□□□ -1.11
LIMA1-215ENST00000552823 HMGXB3Q12766 1538 aa8.14□□□□□ -1.11
LIMA1-215ENST00000552823 ARHGAP35Q9NRY4 1499 aa8.14□□□□□ -1.11
LIMA1-215ENST00000552823 RRP7BPQ9NSQ0 103 aa8.14□□□□□ -1.11
LIMA1-215ENST00000552823 TRIM52Q96A61 297 aa8.13□□□□□ -1.11
LIMA1-215ENST00000552823 CCNB3Q8WWL7 1395 aa8.12□□□□□ -1.11
LIMA1-215ENST00000552823 ZNF777Q9ULD5 760 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-215ENST00000552823 DDX10Q13206 875 aaKnown RBP8.1□□□□□ -1.11
LIMA1-215ENST00000552823 DHX57Q6P158 1386 aaKnown RBP8.09□□□□□ -1.11
LIMA1-215ENST00000552823 MTUS2Q5JR59 1369 aa8.09□□□□□ -1.11
LIMA1-215ENST00000552823 PHLDB1Q86UU1 1377 aa8.09□□□□□ -1.11
LIMA1-215ENST00000552823 POLA1P09884 1462 aaPredicted RBP8.09□□□□□ -1.11
LIMA1-215ENST00000552823 AQRO60306 1485 aaKnown RBP eCLIP8.08□□□□□ -1.12
LIMA1-215ENST00000552823 RAB3GAP2Q9H2M9 1393 aa8.08□□□□□ -1.12
LIMA1-215ENST00000552823 FOXD1Q16676 465 aa8.08□□□□□ -1.12
LIMA1-215ENST00000552823 KCNH8Q96L42 1107 aa8.08□□□□□ -1.12
LIMA1-215ENST00000552823 TOPBP1Q92547 1522 aa8.07□□□□□ -1.12
LIMA1-215ENST00000552823 POLR3GLQ9BT43 218 aa8.07□□□□□ -1.12
LIMA1-215ENST00000552823 BIVM-ERCC5R4GMW8 1640 aa8.06□□□□□ -1.12
LIMA1-215ENST00000552823 CHMP7Q8WUX9 453 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-215ENST00000552823 ZNF326Q5BKZ1 582 aaKnown RBP8.04□□□□□ -1.12
LIMA1-215ENST00000552823 ERICH3Q5RHP9 1530 aa8.04□□□□□ -1.12
LIMA1-215ENST00000552823 PDS5BQ9NTI5 1447 aa8.03□□□□□ -1.12
LIMA1-215ENST00000552823 URB2Q14146 1524 aaKnown RBP8.03□□□□□ -1.12
LIMA1-215ENST00000552823 SENP3-EIF4A1A0A087X0R7 540 aa8.02□□□□□ -1.12
LIMA1-215ENST00000552823 BCANQ96GW7 911 aa8.02□□□□□ -1.13
LIMA1-215ENST00000552823 GAPVD1Q14C86 1478 aa8.01□□□□□ -1.13
LIMA1-215ENST00000552823 ZNF644Q9H582 1327 aaPredicted RBP8□□□□□ -1.13
LIMA1-215ENST00000552823 FHAD1B1AJZ9 1412 aa7.99□□□□□ -1.13
LIMA1-215ENST00000552823 SETD5Q9C0A6 1442 aa7.99□□□□□ -1.13
LIMA1-215ENST00000552823 ERCC6Q03468 1493 aa7.99□□□□□ -1.13
LIMA1-215ENST00000552823 LRRC9Q6ZRR7 1453 aa7.99□□□□□ -1.13
LIMA1-215ENST00000552823 RRBP1Q9P2E9 1410 aaKnown RBP7.97□□□□□ -1.13
LIMA1-215ENST00000552823 DNMBPQ6XZF7 1577 aa7.96□□□□□ -1.13
LIMA1-215ENST00000552823 ZNF608Q9ULD9 1512 aaPredicted RBP7.96□□□□□ -1.13
LIMA1-215ENST00000552823 TONSLQ96HA7 1378 aa7.96□□□□□ -1.14
LIMA1-215ENST00000552823 ABCA10Q8WWZ4 1543 aa7.96□□□□□ -1.14
LIMA1-215ENST00000552823 PCF11O94913 1555 aaKnown RBP7.94□□□□□ -1.14
LIMA1-215ENST00000552823 TIAM1Q13009 1591 aa7.94□□□□□ -1.14
LIMA1-215ENST00000552823 FMN1Q68DA7 1419 aa7.92□□□□□ -1.14
LIMA1-215ENST00000552823 PPP1R15AO75807 674 aaPredicted RBP7.92□□□□□ -1.14
LIMA1-215ENST00000552823 CFDP1Q9UEE9 299 aaPredicted RBP7.92□□□□□ -1.14
LIMA1-215ENST00000552823 SLC4A1APQ9BWU0 796 aaKnown RBP7.92□□□□□ -1.14
LIMA1-215ENST00000552823 MYT1LQ9UL68 1186 aa7.92□□□□□ -1.14
LIMA1-215ENST00000552823 KDM2AQ9Y2K7 1162 aa7.92□□□□□ -1.14
LIMA1-215ENST00000552823 JPH4Q96JJ6 628 aa7.91□□□□□ -1.14
LIMA1-215ENST00000552823 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.91□□□□□ -1.148e-10■■■□□ 17.1
LIMA1-215ENST00000552823 PTPRKQ15262 1439 aa7.91□□□□□ -1.14
LIMA1-215ENST00000552823 SLC24A1O60721 1099 aa7.91□□□□□ -1.14
LIMA1-215ENST00000552823 CASKIN1Q8WXD9 1431 aa7.9□□□□□ -1.14
LIMA1-215ENST00000552823 FGD6Q6ZV73 1430 aa7.9□□□□□ -1.14
LIMA1-215ENST00000552823 CLSPNQ9HAW4 1339 aa7.9□□□□□ -1.15
LIMA1-215ENST00000552823 CDK13Q14004 1512 aaKnown RBP7.9□□□□□ -1.15
LIMA1-215ENST00000552823 ANP32CO43423 234 aa7.9□□□□□ -1.15
LIMA1-215ENST00000552823 CDK11AQ9UQ88 783 aaPredicted RBP7.9□□□□□ -1.15
LIMA1-215ENST00000552823 NCOA2Q15596 1464 aa7.89□□□□□ -1.15
LIMA1-215ENST00000552823 MPHOSPH9Q99550 1183 aa7.89□□□□□ -1.15
LIMA1-215ENST00000552823 KIF21AQ7Z4S6 1674 aa7.89□□□□□ -1.15
LIMA1-215ENST00000552823 IRX6P78412 446 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-215ENST00000552823 SENP3Q9H4L4 574 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-215ENST00000552823 L3MBTL2Q969R5 705 aa7.88□□□□□ -1.15
LIMA1-215ENST00000552823 PLEKHD1A6NEE1 506 aa7.88□□□□□ -1.15
LIMA1-215ENST00000552823 HNRNPMP52272 730 aaKnown RBP eCLIP7.88□□□□□ -1.15
LIMA1-215ENST00000552823 LAMC3Q9Y6N6 1575 aa7.87□□□□□ -1.15
LIMA1-215ENST00000552823 RGL3Q3MIN7 710 aa7.86□□□□□ -1.15
LIMA1-215ENST00000552823 WDR97A6NE52 1622 aa7.86□□□□□ -1.15
LIMA1-215ENST00000552823 HSPA5P11021 654 aaKnown RBP7.86□□□□□ -1.15
LIMA1-215ENST00000552823 SNAPC4Q5SXM2 1469 aa7.85□□□□□ -1.15
LIMA1-215ENST00000552823 CCDC18Q5T9S5 1454 aa7.85□□□□□ -1.15
LIMA1-215ENST00000552823 FAM9BQ8IZU0 186 aa7.85□□□□□ -1.15
LIMA1-215ENST00000552823 FKBP8Q14318 412 aa7.85□□□□□ -1.15
LIMA1-215ENST00000552823 PRG4Q92954 1404 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-215ENST00000552823 FYCO1Q9BQS8 1478 aa7.85□□□□□ -1.15
LIMA1-215ENST00000552823 MRC2Q9UBG0 1479 aa7.85□□□□□ -1.15
LIMA1-215ENST00000552823 MYOM3Q5VTT5 1437 aa7.84□□□□□ -1.15
LIMA1-215ENST00000552823 MAPKBP1O60336 1514 aa7.84□□□□□ -1.15
LIMA1-215ENST00000552823 GRIN2BQ13224 1484 aa7.84□□□□□ -1.15
LIMA1-215ENST00000552823 PRDM2Q13029 1718 aa7.84□□□□□ -1.16
LIMA1-215ENST00000552823 HNRNPUQ00839 825 aaKnown RBP eCLIP7.83□□□□□ -1.16
LIMA1-215ENST00000552823 PKD2Q13563 968 aa7.83□□□□□ -1.16
LIMA1-215ENST00000552823 TSPY4P0CV99 314 aa7.82□□□□□ -1.16
LIMA1-215ENST00000552823 TSPY10P0CW01 314 aa7.82□□□□□ -1.16
LIMA1-215ENST00000552823 PLB1Q6P1J6 1458 aa7.82□□□□□ -1.16
LIMA1-215ENST00000552823 SALL2Q9Y467 1007 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-215ENST00000552823 NAIPQ13075 1403 aa7.82□□□□□ -1.16
LIMA1-215ENST00000552823 EIF4G2P78344 907 aaKnown RBP eCLIP7.81□□□□□ -1.16
LIMA1-215ENST00000552823 NBPF8Q3BBV2 869 aa7.81□□□□□ -1.16
LIMA1-215ENST00000552823 EPRSP07814 1512 aaKnown RBP7.8□□□□□ -1.16
LIMA1-215ENST00000552823 MAGI3Q5TCQ9 1506 aa7.8□□□□□ -1.16
LIMA1-215ENST00000552823 C11orf95C9JLR9 678 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-215ENST00000552823 CCDC184Q52MB2 194 aa7.8□□□□□ -1.16
LIMA1-215ENST00000552823 SUPT16HQ9Y5B9 1047 aaKnown RBP7.8□□□□□ -1.16
LIMA1-215ENST00000552823 EFCAB5A4FU69 1503 aa7.8□□□□□ -1.16
LIMA1-215ENST00000552823 NEFLP07196 543 aa7.79□□□□□ -1.16
LIMA1-215ENST00000552823 CUL7Q14999 1698 aa7.78□□□□□ -1.16
LIMA1-215ENST00000552823 THOC2Q8NI27 1593 aaKnown RBP7.78□□□□□ -1.16
LIMA1-215ENST00000552823 DCAF11Q8TEB1 546 aa7.77□□□□□ -1.16
LIMA1-215ENST00000552823 IFT140Q96RY7 1462 aa7.77□□□□□ -1.16
LIMA1-215ENST00000552823 IQGAP2Q13576 1575 aa7.77□□□□□ -1.17
LIMA1-215ENST00000552823 ABCA5Q8WWZ7 1642 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms