RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 TOPBP1Q92547 1522 aa13.92□□□□□ -0.18
PTCH1-220ENST00000550136 TSHZ2Q9NRE2 1034 aa13.91□□□□□ -0.18
PTCH1-220ENST00000550136 TOP2AP11388 1531 aaKnown RBP13.9□□□□□ -0.18
PTCH1-220ENST00000550136 ABCC8Q09428 1581 aa13.9□□□□□ -0.18
PTCH1-220ENST00000550136 DCAF8L1A6NGE4 600 aa13.89□□□□□ -0.19
PTCH1-220ENST00000550136 PODXL2Q9NZ53 605 aa13.88□□□□□ -0.19
PTCH1-220ENST00000550136 PKNOX2Q96KN3 472 aa13.87□□□□□ -0.19
PTCH1-220ENST00000550136 AQRO60306 1485 aaKnown RBP eCLIP13.85□□□□□ -0.19
PTCH1-220ENST00000550136 TARBP1Q13395 1621 aaKnown RBP13.85□□□□□ -0.19
PTCH1-220ENST00000550136 RNF216Q9NWF9 866 aaPredicted RBP13.85□□□□□ -0.19
PTCH1-220ENST00000550136 CLASP1Q7Z460 1538 aa13.84□□□□□ -0.19
PTCH1-220ENST00000550136 DNMBPQ6XZF7 1577 aa13.84□□□□□ -0.19
PTCH1-220ENST00000550136 ERICH6BQ5W0A0 696 aa13.83□□□□□ -0.19
PTCH1-220ENST00000550136 FBLN2P98095 1184 aa13.83□□□□□ -0.2
PTCH1-220ENST00000550136 CLSPNQ9HAW4 1339 aa13.82□□□□□ -0.2
PTCH1-220ENST00000550136 SALL2Q9Y467 1007 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-220ENST00000550136 DIEXFQ68CQ4 756 aaKnown RBP13.81□□□□□ -0.2
PTCH1-220ENST00000550136 MYT1LQ9UL68 1186 aa13.77□□□□□ -0.21
PTCH1-220ENST00000550136 SYNJ1O43426 1573 aa13.77□□□□□ -0.21
PTCH1-220ENST00000550136 WDR97A6NE52 1622 aa13.73□□□□□ -0.21
PTCH1-220ENST00000550136 CACNB1Q02641 598 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-220ENST00000550136 NCBP3Q53F19 620 aaKnown RBP13.73□□□□□ -0.21
PTCH1-220ENST00000550136 POLA1P09884 1462 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-220ENST00000550136 CCDC88BA6NC98 1476 aa13.72□□□□□ -0.21
PTCH1-220ENST00000550136 SNAPC4Q5SXM2 1469 aa13.72□□□□□ -0.21
PTCH1-220ENST00000550136 GAPVD1Q14C86 1478 aa13.71□□□□□ -0.22
PTCH1-220ENST00000550136 CCDC136Q96JN2 1154 aa13.7□□□□□ -0.22
PTCH1-220ENST00000550136 MAGI1Q96QZ7 1491 aaPredicted RBP13.69□□□□□ -0.22
PTCH1-220ENST00000550136 CHMP7Q8WUX9 453 aaPredicted RBP13.68□□□□□ -0.22
PTCH1-220ENST00000550136 TDRD9Q8NDG6 1382 aaKnown RBP13.67□□□□□ -0.22
PTCH1-220ENST00000550136 SUPT16HQ9Y5B9 1047 aaKnown RBP13.67□□□□□ -0.22
PTCH1-220ENST00000550136 RAD54L2Q9Y4B4 1467 aa13.66□□□□□ -0.22
PTCH1-220ENST00000550136 ILDR1Q86SU0 546 aaPredicted RBP13.66□□□□□ -0.22
PTCH1-220ENST00000550136 SOGA1O94964 1423 aa13.66□□□□□ -0.22
PTCH1-220ENST00000550136 SYNJ2O15056 1496 aa13.65□□□□□ -0.22
PTCH1-220ENST00000550136 GRIN2BQ13224 1484 aa13.62□□□□□ -0.23
PTCH1-220ENST00000550136 RNF39Q9H2S5 420 aa13.59□□□□□ -0.23
PTCH1-220ENST00000550136 DEKP35659 375 aaKnown RBP13.57□□□□□ -0.24
PTCH1-220ENST00000550136 YTHDC1Q96MU7 727 aaKnown RBP13.57□□□□□ -0.24
PTCH1-220ENST00000550136 FGD5Q6ZNL6 1462 aa13.56□□□□□ -0.24
PTCH1-220ENST00000550136 KIF13AQ9H1H9 1805 aa13.56□□□□□ -0.24
PTCH1-220ENST00000550136 ERCC6L2Q5T890 1561 aa13.52□□□□□ -0.24
PTCH1-220ENST00000550136 PBRM1Q86U86 1689 aa13.52□□□□□ -0.25
PTCH1-220ENST00000550136 NEFLP07196 543 aa13.51□□□□□ -0.25
PTCH1-220ENST00000550136 KDM4FA0A1W2PPD8 638 aa13.49□□□□□ -0.25
PTCH1-220ENST00000550136 CEP170Q5SW79 1584 aa13.48□□□□□ -0.25
PTCH1-220ENST00000550136 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.47□□□□□ -0.25
PTCH1-220ENST00000550136 CUX1P39880 1505 aa13.46□□□□□ -0.25
PTCH1-220ENST00000550136 RBM19Q9Y4C8 960 aaKnown RBP13.46□□□□□ -0.25
PTCH1-220ENST00000550136 SHROOM2Q13796 1616 aa13.45□□□□□ -0.26
PTCH1-220ENST00000550136 C1QBPQ07021 282 aaKnown RBP13.45□□□□□ -0.26
PTCH1-220ENST00000550136 GRIN2AQ12879 1464 aa13.44□□□□□ -0.26
PTCH1-220ENST00000550136 NUP160Q12769 1436 aa13.43□□□□□ -0.26
PTCH1-220ENST00000550136 ABCA5Q8WWZ7 1642 aa13.43□□□□□ -0.26
PTCH1-220ENST00000550136 ABCC10Q5T3U5 1492 aa13.43□□□□□ -0.26
PTCH1-220ENST00000550136 NPM3O75607 178 aaKnown RBP13.41□□□□□ -0.26
PTCH1-220ENST00000550136 ABCA10Q8WWZ4 1543 aa13.4□□□□□ -0.26
PTCH1-220ENST00000550136 KDM6BO15054 1643 aa13.4□□□□□ -0.26
PTCH1-220ENST00000550136 FAM69CQ0P6D2 419 aa13.39□□□□□ -0.27
PTCH1-220ENST00000550136 MAPKBP1O60336 1514 aa13.38□□□□□ -0.27
PTCH1-220ENST00000550136 ADAMTS12P58397 1594 aa13.37□□□□□ -0.27
PTCH1-220ENST00000550136 DIP2BQ9P265 1576 aa13.37□□□□□ -0.27
PTCH1-220ENST00000550136 PDE4CQ08493 712 aa13.36□□□□□ -0.27
PTCH1-220ENST00000550136 FANCIQ9NVI1 1328 aa13.35□□□□□ -0.27
PTCH1-220ENST00000550136 PDIA4P13667 645 aaKnown RBP13.35□□□□□ -0.27
PTCH1-220ENST00000550136 NPM1P06748 294 aaKnown RBP eCLIP13.32□□□□□ -0.28
PTCH1-220ENST00000550136 PRG4Q92954 1404 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-220ENST00000550136 FHAD1B1AJZ9 1412 aa13.31□□□□□ -0.28
PTCH1-220ENST00000550136 ZNF316A6NFI3 1004 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-220ENST00000550136 MIER1Q8N108 512 aa13.31□□□□□ -0.28
PTCH1-220ENST00000550136 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.31□□□□□ -0.28
PTCH1-220ENST00000550136 GLIPR1L2Q4G1C9 344 aa13.3□□□□□ -0.28
PTCH1-220ENST00000550136 RANGAP1P46060 587 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-220ENST00000550136 FGD1P98174 961 aa13.28□□□□□ -0.28
PTCH1-220ENST00000550136 HECW2Q9P2P5 1572 aa13.27□□□□□ -0.28
PTCH1-220ENST00000550136 IL27Q8NEV9 243 aa13.27□□□□□ -0.29
PTCH1-220ENST00000550136 ADGRL1O94910 1474 aa13.27□□□□□ -0.29
PTCH1-220ENST00000550136 KLHL34Q8N239 644 aa13.27□□□□□ -0.29
PTCH1-220ENST00000550136 ARXQ96QS3 562 aa13.26□□□□□ -0.29
PTCH1-220ENST00000550136 ADCY10Q96PN6 1610 aa13.26□□□□□ -0.29
PTCH1-220ENST00000550136 ZMYND15Q9H091 742 aa13.25□□□□□ -0.29
PTCH1-220ENST00000550136 JPH4Q96JJ6 628 aa13.25□□□□□ -0.29
PTCH1-220ENST00000550136 SUPT5HO00267 1087 aaKnown RBP13.24□□□□□ -0.29
PTCH1-220ENST00000550136 TSPOAP1O95153 1857 aa13.24□□□□□ -0.29
PTCH1-220ENST00000550136 LOC105371045A0A1W2PR82 267 aa13.24□□□□□ -0.29
PTCH1-220ENST00000550136 CCER1Q8TC90 406 aaPredicted RBP13.23□□□□□ -0.29
PTCH1-220ENST00000550136 ERICH3Q5RHP9 1530 aa13.23□□□□□ -0.29
PTCH1-220ENST00000550136 WRNQ14191 1432 aaPredicted RBP eCLIP13.22□□□□□ -0.29
PTCH1-220ENST00000550136 FBXO41Q8TF61 875 aa13.2□□□□□ -0.3
PTCH1-220ENST00000550136 RUSC2Q8N2Y8 1516 aa13.19□□□□□ -0.3
PTCH1-220ENST00000550136 RTN4Q9NQC3 1192 aaKnown RBP13.19□□□□□ -0.3
PTCH1-220ENST00000550136 AAMPQ13685 434 aa13.18□□□□□ -0.3
PTCH1-220ENST00000550136 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.15□□□□□ -0.3
PTCH1-220ENST00000550136 GLI2P10070 1586 aa13.15□□□□□ -0.3
PTCH1-220ENST00000550136 PPRC1Q5VV67 1664 aaKnown RBP13.15□□□□□ -0.3
PTCH1-220ENST00000550136 A0A0U1RQG5 324 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-220ENST00000550136 BCL11BQ9C0K0 894 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-220ENST00000550136 VSIG10Q8N0Z9 540 aa13.13□□□□□ -0.31
PTCH1-220ENST00000550136 BIVM-ERCC5R4GMW8 1640 aa13.13□□□□□ -0.31
PTCH1-220ENST00000550136 RBM10P98175 930 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms