RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 RSF1Q96T23 1441 aaPredicted RBP13.03□□□□□ -0.32
DEPDC4-208ENST00000549341 ZBTB12Q9Y330 459 aaPredicted RBP13.01□□□□□ -0.33
DEPDC4-208ENST00000549341 AQRO60306 1485 aaKnown RBP eCLIP13.01□□□□□ -0.33
DEPDC4-208ENST00000549341 AKT1S1Q96B36 256 aa13□□□□□ -0.33
DEPDC4-208ENST00000549341 CHD1O14646 1710 aa12.97□□□□□ -0.33
DEPDC4-208ENST00000549341 DNMBPQ6XZF7 1577 aa12.94□□□□□ -0.34
DEPDC4-208ENST00000549341 CCDC88BA6NC98 1476 aa12.92□□□□□ -0.34
DEPDC4-208ENST00000549341 ABCC8Q09428 1581 aa12.91□□□□□ -0.34
DEPDC4-208ENST00000549341 PRDM2Q13029 1718 aa12.91□□□□□ -0.34
DEPDC4-208ENST00000549341 SP7Q8TDD2 431 aaPredicted RBP12.9□□□□□ -0.34
DEPDC4-208ENST00000549341 SNAPC4Q5SXM2 1469 aa12.9□□□□□ -0.34
DEPDC4-208ENST00000549341 TARBP1Q13395 1621 aaKnown RBP12.89□□□□□ -0.35
DEPDC4-208ENST00000549341 TDRD9Q8NDG6 1382 aaKnown RBP12.89□□□□□ -0.35
DEPDC4-208ENST00000549341 POLA1P09884 1462 aaPredicted RBP12.89□□□□□ -0.35
DEPDC4-208ENST00000549341 RAD54L2Q9Y4B4 1467 aa12.87□□□□□ -0.35
DEPDC4-208ENST00000549341 CLASP1Q7Z460 1538 aa12.86□□□□□ -0.35
DEPDC4-208ENST00000549341 CHMP7Q8WUX9 453 aaPredicted RBP12.85□□□□□ -0.35
DEPDC4-208ENST00000549341 FOXD4L1Q9NU39 408 aa12.85□□□□□ -0.35
DEPDC4-208ENST00000549341 SYNJ1O43426 1573 aa12.83□□□□□ -0.36
DEPDC4-208ENST00000549341 REM2Q8IYK8 340 aaPredicted RBP12.83□□□□□ -0.36
DEPDC4-208ENST00000549341 SOGA1O94964 1423 aa12.81□□□□□ -0.36
DEPDC4-208ENST00000549341 GAPVD1Q14C86 1478 aa12.8□□□□□ -0.36
DEPDC4-208ENST00000549341 SLC4A1APQ9BWU0 796 aaKnown RBP12.8□□□□□ -0.36
DEPDC4-208ENST00000549341 ATF5Q9Y2D1 282 aaPredicted RBP12.8□□□□□ -0.36
DEPDC4-208ENST00000549341 MAGI1Q96QZ7 1491 aaPredicted RBP12.78□□□□□ -0.36
DEPDC4-208ENST00000549341 PIP4P2Q8N4L2 257 aa12.78□□□□□ -0.36
DEPDC4-208ENST00000549341 FGD5Q6ZNL6 1462 aa12.77□□□□□ -0.37
DEPDC4-208ENST00000549341 SYNJ2O15056 1496 aa12.76□□□□□ -0.37
DEPDC4-208ENST00000549341 GRIN2BQ13224 1484 aa12.76□□□□□ -0.37
DEPDC4-208ENST00000549341 WDR97A6NE52 1622 aa12.71□□□□□ -0.37
DEPDC4-208ENST00000549341 HAX1O00165 279 aa12.69□□□□□ -0.38
DEPDC4-208ENST00000549341 PITPNM1O00562 1244 aa12.67□□□□□ -0.38
DEPDC4-208ENST00000549341 ERCC6L2Q5T890 1561 aa12.67□□□□□ -0.38
DEPDC4-208ENST00000549341 CUX1P39880 1505 aa12.67□□□□□ -0.38
DEPDC4-208ENST00000549341 FXR2P51116 673 aaKnown RBP eCLIP12.66□□□□□ -0.38
DEPDC4-208ENST00000549341 GRIN2AQ12879 1464 aa12.6□□□□□ -0.39
DEPDC4-208ENST00000549341 PBRM1Q86U86 1689 aa12.6□□□□□ -0.39
DEPDC4-208ENST00000549341 ILDR1Q86SU0 546 aaPredicted RBP12.59□□□□□ -0.39
DEPDC4-208ENST00000549341 CEP170Q5SW79 1584 aa12.59□□□□□ -0.39
DEPDC4-208ENST00000549341 ABCA5Q8WWZ7 1642 aa12.56□□□□□ -0.4
DEPDC4-208ENST00000549341 ATXN8OSP0DMR3 200 aa12.56□□□□□ -0.4
DEPDC4-208ENST00000549341 ABCA10Q8WWZ4 1543 aa12.56□□□□□ -0.4
DEPDC4-208ENST00000549341 NUP160Q12769 1436 aa12.55□□□□□ -0.4
DEPDC4-208ENST00000549341 FAM69CQ0P6D2 419 aa12.54□□□□□ -0.4
DEPDC4-208ENST00000549341 ADAMTS12P58397 1594 aa12.54□□□□□ -0.4
DEPDC4-208ENST00000549341 SPDYE2BA6NHP3 402 aa12.53□□□□□ -0.4
DEPDC4-208ENST00000549341 SPDYE6P0CI01 402 aa12.53□□□□□ -0.4
DEPDC4-208ENST00000549341 SPDYE2Q495Y8 402 aa12.53□□□□□ -0.4
DEPDC4-208ENST00000549341 KDM4FA0A1W2PPD8 638 aa12.51□□□□□ -0.41
DEPDC4-208ENST00000549341 PRG4Q92954 1404 aaPredicted RBP12.5□□□□□ -0.41
DEPDC4-208ENST00000549341 ABCC10Q5T3U5 1492 aa12.49□□□□□ -0.41
DEPDC4-208ENST00000549341 KIF13AQ9H1H9 1805 aa12.48□□□□□ -0.41
DEPDC4-208ENST00000549341 FHAD1B1AJZ9 1412 aa12.48□□□□□ -0.41
DEPDC4-208ENST00000549341 SHROOM2Q13796 1616 aa12.48□□□□□ -0.41
DEPDC4-208ENST00000549341 WRNQ14191 1432 aaPredicted RBP eCLIP12.46□□□□□ -0.41
DEPDC4-208ENST00000549341 NPM1P06748 294 aaKnown RBP eCLIP12.46□□□□□ -0.41
DEPDC4-208ENST00000549341 KDM6BO15054 1643 aa12.45□□□□□ -0.42
DEPDC4-208ENST00000549341 DIP2BQ9P265 1576 aa12.43□□□□□ -0.42
DEPDC4-208ENST00000549341 ZBTB22O15209 634 aa12.42□□□□□ -0.42
DEPDC4-208ENST00000549341 MAPKBP1O60336 1514 aa12.42□□□□□ -0.42
DEPDC4-208ENST00000549341 SPDYE1Q8NFV5 336 aaPredicted RBP12.4□□□□□ -0.42
DEPDC4-208ENST00000549341 JPH4Q96JJ6 628 aa12.4□□□□□ -0.42
DEPDC4-208ENST00000549341 EVX2Q03828 476 aa12.39□□□□□ -0.43
DEPDC4-208ENST00000549341 ERICH3Q5RHP9 1530 aa12.37□□□□□ -0.43
DEPDC4-208ENST00000549341 ADCY10Q96PN6 1610 aa12.37□□□□□ -0.43
DEPDC4-208ENST00000549341 PRKAR2AP13861 404 aaKnown RBP12.37□□□□□ -0.43
DEPDC4-208ENST00000549341 RUSC2Q8N2Y8 1516 aa12.37□□□□□ -0.43
DEPDC4-208ENST00000549341 ADGRL1O94910 1474 aa12.36□□□□□ -0.43
DEPDC4-208ENST00000549341 TTBK1Q5TCY1 1321 aaPredicted RBP12.35□□□□□ -0.43
DEPDC4-208ENST00000549341 CLEC11AQ9Y240 323 aa12.34□□□□□ -0.43
DEPDC4-208ENST00000549341 TOP2BQ02880 1626 aa12.31□□□□□ -0.44
DEPDC4-208ENST00000549341 HECW2Q9P2P5 1572 aa12.3□□□□□ -0.44
DEPDC4-208ENST00000549341 TSPOAP1O95153 1857 aa12.3□□□□□ -0.44
DEPDC4-208ENST00000549341 ZNF692Q9BU19 519 aaPredicted RBP12.29□□□□□ -0.44
DEPDC4-208ENST00000549341 BIVM-ERCC5R4GMW8 1640 aa12.28□□□□□ -0.44
DEPDC4-208ENST00000549341 C19orf67A6NJJ6 358 aa12.27□□□□□ -0.45
DEPDC4-208ENST00000549341 SUPT5HO00267 1087 aaKnown RBP12.26□□□□□ -0.45
DEPDC4-208ENST00000549341 SSUH2Q9Y2M2 353 aa12.26□□□□□ -0.45
DEPDC4-208ENST00000549341 PTPRGP23470 1445 aa12.24□□□□□ -0.45
DEPDC4-208ENST00000549341 ASXL2Q76L83 1435 aa12.24□□□□□ -0.45
DEPDC4-208ENST00000549341 KIAA0586Q9BVV6 1533 aa12.23□□□□□ -0.45
DEPDC4-208ENST00000549341 ABCC2Q92887 1545 aa12.22□□□□□ -0.45
DEPDC4-208ENST00000549341 MKRN4PQ13434 485 aaPredicted RBP12.22□□□□□ -0.45
DEPDC4-208ENST00000549341 PLB1Q6P1J6 1458 aa12.21□□□□□ -0.46
DEPDC4-208ENST00000549341 COL17A1Q9UMD9 1497 aaPredicted RBP12.2□□□□□ -0.46
DEPDC4-208ENST00000549341 PPRC1Q5VV67 1664 aaKnown RBP12.18□□□□□ -0.46
DEPDC4-208ENST00000549341 TNIKQ9UKE5 1360 aa12.18□□□□□ -0.46
DEPDC4-208ENST00000549341 GLI2P10070 1586 aa12.17□□□□□ -0.46
DEPDC4-208ENST00000549341 GABBR2O75899 941 aa12.16□□□□□ -0.46
DEPDC4-208ENST00000549341 FBXO41Q8TF61 875 aa12.16□□□□□ -0.46
DEPDC4-208ENST00000549341 CARMIL2Q6F5E8 1435 aa12.16□□□□□ -0.46
DEPDC4-208ENST00000549341 TEX14Q8IWB6 1497 aa12.15□□□□□ -0.46
DEPDC4-208ENST00000549341 EPRSP07814 1512 aaKnown RBP12.15□□□□□ -0.46
DEPDC4-208ENST00000549341 IGF1RP08069 1367 aa12.13□□□□□ -0.47
DEPDC4-208ENST00000549341 KIF27Q86VH2 1401 aa12.12□□□□□ -0.47
DEPDC4-208ENST00000549341 UACAQ9BZF9 1416 aa12.12□□□□□ -0.47
DEPDC4-208ENST00000549341 PRR29P0C7W0 189 aa12.12□□□□□ -0.47
DEPDC4-208ENST00000549341 UHRF1BP1LA0JNW5 1464 aa12.11□□□□□ -0.47
DEPDC4-208ENST00000549341 CUL7Q14999 1698 aa12.1□□□□□ -0.47
DEPDC4-208ENST00000549341 LHX8Q68G74 356 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms