RNA–Protein interactions for RNA: ENST00000546274.6

UBR1-202, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 2 BASIC

Gene UBR1, Length 3,332 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-202ENST00000546274 FANCD2Q9BXW9 1451 aa11.44□□□□□ -0.58
UBR1-202ENST00000546274 BCANQ96GW7 911 aa11.43□□□□□ -0.58
UBR1-202ENST00000546274 SALL2Q9Y467 1007 aaPredicted RBP11.42□□□□□ -0.58
UBR1-202ENST00000546274 WDR62O43379 1518 aa11.41□□□□□ -0.58
UBR1-202ENST00000546274 PHF23Q9BUL5 403 aaPredicted RBP11.4□□□□□ -0.59
UBR1-202ENST00000546274 RANGAP1P46060 587 aaPredicted RBP11.39□□□□□ -0.59
UBR1-202ENST00000546274 RBM19Q9Y4C8 960 aaKnown RBP11.37□□□□□ -0.59
UBR1-202ENST00000546274 DHX57Q6P158 1386 aaKnown RBP11.36□□□□□ -0.59
UBR1-202ENST00000546274 KANK4Q5T7N3 995 aaPredicted RBP11.35□□□□□ -0.59
UBR1-202ENST00000546274 KIF27Q86VH2 1401 aa11.35□□□□□ -0.59
UBR1-202ENST00000546274 RRBP1Q9P2E9 1410 aaKnown RBP11.35□□□□□ -0.59
UBR1-202ENST00000546274 ARHGAP35Q9NRY4 1499 aa11.34□□□□□ -0.59
UBR1-202ENST00000546274 CLSPNQ9HAW4 1339 aa11.32□□□□□ -0.6
UBR1-202ENST00000546274 DEKP35659 375 aaKnown RBP11.32□□□□□ -0.6
UBR1-202ENST00000546274 MSH5O43196 834 aa11.31□□□□□ -0.6
UBR1-202ENST00000546274 URB2Q14146 1524 aaKnown RBP11.3□□□□□ -0.6
UBR1-202ENST00000546274 DNMBPQ6XZF7 1577 aa11.3□□□□□ -0.6
UBR1-202ENST00000546274 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.3□□□□□ -0.6
UBR1-202ENST00000546274 UBE2Q2Q8WVN8 375 aa11.3□□□□□ -0.6
UBR1-202ENST00000546274 EIF5BO60841 1220 aaKnown RBP11.27□□□□□ -0.61
UBR1-202ENST00000546274 TOPBP1Q92547 1522 aa11.27□□□□□ -0.61
UBR1-202ENST00000546274 TIAM1Q13009 1591 aa11.26□□□□□ -0.61
UBR1-202ENST00000546274 IGF1RP08069 1367 aa11.24□□□□□ -0.61
UBR1-202ENST00000546274 CCNB3Q8WWL7 1395 aa11.24□□□□□ -0.61
UBR1-202ENST00000546274 MAP3K1Q13233 1512 aa11.24□□□□□ -0.61
UBR1-202ENST00000546274 IFT140Q96RY7 1462 aa11.23□□□□□ -0.61
UBR1-202ENST00000546274 RTN4Q9NQC3 1192 aaKnown RBP11.23□□□□□ -0.61
UBR1-202ENST00000546274 ITGAEP38570 1179 aa11.23□□□□□ -0.61
UBR1-202ENST00000546274 FKBP8Q14318 412 aa11.22□□□□□ -0.61
UBR1-202ENST00000546274 CFAP43Q8NDM7 1665 aa11.22□□□□□ -0.61
UBR1-202ENST00000546274 MAPKBP1O60336 1514 aa11.21□□□□□ -0.61
UBR1-202ENST00000546274 FGD5Q6ZNL6 1462 aa11.21□□□□□ -0.61
UBR1-202ENST00000546274 WDR97A6NE52 1622 aa11.21□□□□□ -0.61
UBR1-202ENST00000546274 LRRC9Q6ZRR7 1453 aa11.18□□□□□ -0.62
UBR1-202ENST00000546274 PCF11O94913 1555 aaKnown RBP11.18□□□□□ -0.62
UBR1-202ENST00000546274 SLC24A1O60721 1099 aa11.17□□□□□ -0.62
UBR1-202ENST00000546274 CARMIL1Q5VZK9 1371 aa11.16□□□□□ -0.62
UBR1-202ENST00000546274 RAB3GAP2Q9H2M9 1393 aa11.16□□□□□ -0.62
UBR1-202ENST00000546274 TARBP1Q13395 1621 aaKnown RBP11.16□□□□□ -0.62
UBR1-202ENST00000546274 PLEKHG5O94827 1062 aa11.15□□□□□ -0.62
UBR1-202ENST00000546274 POLA1P09884 1462 aaPredicted RBP11.15□□□□□ -0.62
UBR1-202ENST00000546274 PHLDB1Q86UU1 1377 aa11.14□□□□□ -0.63
UBR1-202ENST00000546274 NBR1Q14596 966 aa11.14□□□□□ -0.63
UBR1-202ENST00000546274 MYT1LQ9UL68 1186 aa11.14□□□□□ -0.63
UBR1-202ENST00000546274 IL27Q8NEV9 243 aa11.13□□□□□ -0.63
UBR1-202ENST00000546274 CTTNBP2Q8WZ74 1663 aa11.13□□□□□ -0.63
UBR1-202ENST00000546274 PKNOX2Q96KN3 472 aa11.12□□□□□ -0.63
UBR1-202ENST00000546274 ERICH6BQ5W0A0 696 aa11.12□□□□□ -0.63
UBR1-202ENST00000546274 EIF4G3O43432 1585 aaKnown RBP11.11□□□□□ -0.63
UBR1-202ENST00000546274 SETD5Q9C0A6 1442 aa11.1□□□□□ -0.63
UBR1-202ENST00000546274 ABCA10Q8WWZ4 1543 aa11.1□□□□□ -0.63
UBR1-202ENST00000546274 FHAD1B1AJZ9 1412 aa11.1□□□□□ -0.63
UBR1-202ENST00000546274 CUL7Q14999 1698 aa11.09□□□□□ -0.63
UBR1-202ENST00000546274 LRRIQ1Q96JM4 1722 aa11.08□□□□□ -0.63
UBR1-202ENST00000546274 NEFLP07196 543 aa11.08□□□□□ -0.64
UBR1-202ENST00000546274 RAD54L2Q9Y4B4 1467 aa11.08□□□□□ -0.64
UBR1-202ENST00000546274 EFCAB5A4FU69 1503 aa11.08□□□□□ -0.64
UBR1-202ENST00000546274 FYCO1Q9BQS8 1478 aa11.08□□□□□ -0.64
UBR1-202ENST00000546274 ZNF608Q9ULD9 1512 aaPredicted RBP11.06□□□□□ -0.64
UBR1-202ENST00000546274 FHOD3Q2V2M9 1422 aa11.06□□□□□ -0.64
UBR1-202ENST00000546274 AQRO60306 1485 aaKnown RBP eCLIP11.06□□□□□ -0.641e-6■■■■■ 30.5
UBR1-202ENST00000546274 CASKIN1Q8WXD9 1431 aa11.04□□□□□ -0.64
UBR1-202ENST00000546274 FANCIQ9NVI1 1328 aa11.04□□□□□ -0.64
UBR1-202ENST00000546274 KCNH8Q96L42 1107 aa11.04□□□□□ -0.64
UBR1-202ENST00000546274 ABCA5Q8WWZ7 1642 aa11.03□□□□□ -0.64
UBR1-202ENST00000546274 SNAPC4Q5SXM2 1469 aa11.03□□□□□ -0.64
UBR1-202ENST00000546274 DNAJC5Q9H3Z4 198 aa11.03□□□□□ -0.64
UBR1-202ENST00000546274 PBRM1Q86U86 1689 aa11.03□□□□□ -0.64
UBR1-202ENST00000546274 GRIN2BQ13224 1484 aa11.02□□□□□ -0.65
UBR1-202ENST00000546274 P3H3Q8IVL6 736 aa11.02□□□□□ -0.65
UBR1-202ENST00000546274 SAMD9Q5K651 1589 aa11.02□□□□□ -0.65
UBR1-202ENST00000546274 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.02□□□□□ -0.65
UBR1-202ENST00000546274 MAGI1Q96QZ7 1491 aaPredicted RBP11.01□□□□□ -0.65
UBR1-202ENST00000546274 SIN3AQ96ST3 1273 aa11.01□□□□□ -0.65
UBR1-202ENST00000546274 PODXL2Q9NZ53 605 aa11.01□□□□□ -0.65
UBR1-202ENST00000546274 FAM50AQ14320 339 aaKnown RBP11□□□□□ -0.65
UBR1-202ENST00000546274 GAPVD1Q14C86 1478 aa10.99□□□□□ -0.65
UBR1-202ENST00000546274 CDK11AQ9UQ88 783 aaPredicted RBP10.98□□□□□ -0.65
UBR1-202ENST00000546274 FGD6Q6ZV73 1430 aa10.98□□□□□ -0.65
UBR1-202ENST00000546274 TDRD9Q8NDG6 1382 aaKnown RBP10.97□□□□□ -0.65
UBR1-202ENST00000546274 CHD1O14646 1710 aa10.97□□□□□ -0.65
UBR1-202ENST00000546274 PTPN23Q9H3S7 1636 aa10.97□□□□□ -0.65
UBR1-202ENST00000546274 PTPRKQ15262 1439 aa10.96□□□□□ -0.65
UBR1-202ENST00000546274 FMN1Q68DA7 1419 aa10.96□□□□□ -0.66
UBR1-202ENST00000546274 PPP1R15AO75807 674 aaPredicted RBP10.96□□□□□ -0.66
UBR1-202ENST00000546274 OSCARQ8IYS5 282 aa10.95□□□□□ -0.66
UBR1-202ENST00000546274 TIMELESSQ9UNS1 1208 aa10.95□□□□□ -0.66
UBR1-202ENST00000546274 SYNJ2O15056 1496 aa10.95□□□□□ -0.66
UBR1-202ENST00000546274 RTL5Q5HYW3 569 aaPredicted RBP10.94□□□□□ -0.66
UBR1-202ENST00000546274 CCDC18Q5T9S5 1454 aa10.94□□□□□ -0.66
UBR1-202ENST00000546274 ATP1B4Q9UN42 357 aaPredicted RBP10.94□□□□□ -0.66
UBR1-202ENST00000546274 HFM1A2PYH4 1435 aa10.93□□□□□ -0.66
UBR1-202ENST00000546274 SUPT6HQ7KZ85 1726 aaKnown RBP10.93□□□□□ -0.66
UBR1-202ENST00000546274 KDM5BQ9UGL1 1544 aa10.93□□□□□ -0.66
UBR1-202ENST00000546274 ADAMTS12P58397 1594 aa10.92□□□□□ -0.66
UBR1-202ENST00000546274 DDX10Q13206 875 aaKnown RBP10.92□□□□□ -0.66
UBR1-202ENST00000546274 ARHGEF11O15085 1522 aa10.92□□□□□ -0.66
UBR1-202ENST00000546274 MAGI3Q5TCQ9 1506 aa10.91□□□□□ -0.66
UBR1-202ENST00000546274 NCOA2Q15596 1464 aa10.91□□□□□ -0.66
UBR1-202ENST00000546274 UACAQ9BZF9 1416 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms