RNA–Protein interactions for RNA: ENST00000546084.5

TRAF1-203, Transcript of TNF receptor associated factor 1, humanhuman

TSL 2 BASIC

Gene TRAF1, Length 3,715 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-203ENST00000546084 HNRNPUQ00839 825 aaKnown RBP eCLIP13.75□□□□□ -0.21
TRAF1-203ENST00000546084 CLSPNQ9HAW4 1339 aa13.74□□□□□ -0.21
TRAF1-203ENST00000546084 DHX57Q6P158 1386 aaKnown RBP13.74□□□□□ -0.21
TRAF1-203ENST00000546084 CUX2O14529 1486 aa13.71□□□□□ -0.21
TRAF1-203ENST00000546084 TSHZ2Q9NRE2 1034 aa13.71□□□□□ -0.21
TRAF1-203ENST00000546084 TONSLQ96HA7 1378 aa13.71□□□□□ -0.21
TRAF1-203ENST00000546084 KIF27Q86VH2 1401 aa13.7□□□□□ -0.22
TRAF1-203ENST00000546084 ATAD2BQ9ULI0 1458 aa13.7□□□□□ -0.22
TRAF1-203ENST00000546084 MTUS2Q5JR59 1369 aa13.69□□□□□ -0.22
TRAF1-203ENST00000546084 SENP3Q9H4L4 574 aaPredicted RBP13.68□□□□□ -0.22
TRAF1-203ENST00000546084 CCNB3Q8WWL7 1395 aa13.68□□□□□ -0.22
TRAF1-203ENST00000546084 KDM2AQ9Y2K7 1162 aa13.66□□□□□ -0.22
TRAF1-203ENST00000546084 SYNJ1O43426 1573 aa13.65□□□□□ -0.22
TRAF1-203ENST00000546084 CARMIL1Q5VZK9 1371 aa13.65□□□□□ -0.22
TRAF1-203ENST00000546084 TDRD9Q8NDG6 1382 aaKnown RBP13.65□□□□□ -0.22
TRAF1-203ENST00000546084 ANP32EQ9BTT0 268 aa13.64□□□□□ -0.23
TRAF1-203ENST00000546084 KIF21BO75037 1637 aa13.64□□□□□ -0.23
TRAF1-203ENST00000546084 RAB3GAP2Q9H2M9 1393 aa13.63□□□□□ -0.23
TRAF1-203ENST00000546084 DNAJC5BQ9UF47 199 aa13.62□□□□□ -0.23
TRAF1-203ENST00000546084 SLC4A1APQ9BWU0 796 aaKnown RBP13.59□□□□□ -0.23
TRAF1-203ENST00000546084 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.59□□□□□ -0.23
TRAF1-203ENST00000546084 FHOD3Q2V2M9 1422 aa13.58□□□□□ -0.24
TRAF1-203ENST00000546084 MRS2Q9HD23 443 aa13.54□□□□□ -0.24
TRAF1-203ENST00000546084 RGL3Q3MIN7 710 aa13.52□□□□□ -0.24
TRAF1-203ENST00000546084 ARAP1Q96P48 1450 aa13.51□□□□□ -0.25
TRAF1-203ENST00000546084 RBM19Q9Y4C8 960 aaKnown RBP13.49□□□□□ -0.25
TRAF1-203ENST00000546084 EIF5BO60841 1220 aaKnown RBP13.48□□□□□ -0.25
TRAF1-203ENST00000546084 RAD54L2Q9Y4B4 1467 aa13.47□□□□□ -0.25
TRAF1-203ENST00000546084 CHMP7Q8WUX9 453 aaPredicted RBP13.47□□□□□ -0.25
TRAF1-203ENST00000546084 NPM2Q86SE8 214 aaKnown RBP13.47□□□□□ -0.25
TRAF1-203ENST00000546084 IGF1RP08069 1367 aa13.46□□□□□ -0.25
TRAF1-203ENST00000546084 SETD5Q9C0A6 1442 aa13.46□□□□□ -0.25
TRAF1-203ENST00000546084 CDK11AQ9UQ88 783 aaPredicted RBP13.46□□□□□ -0.25
TRAF1-203ENST00000546084 PHLDB1Q86UU1 1377 aa13.45□□□□□ -0.26
TRAF1-203ENST00000546084 RRBP1Q9P2E9 1410 aaKnown RBP13.45□□□□□ -0.26
TRAF1-203ENST00000546084 EIF4G2P78344 907 aaKnown RBP eCLIP13.44□□□□□ -0.26
TRAF1-203ENST00000546084 PPP1R15AO75807 674 aaPredicted RBP13.43□□□□□ -0.26
TRAF1-203ENST00000546084 HSPA5P11021 654 aaKnown RBP13.43□□□□□ -0.26
TRAF1-203ENST00000546084 B4GALNT3Q6L9W6 998 aa13.42□□□□□ -0.26
TRAF1-203ENST00000546084 PRXQ9BXM0 1461 aa13.42□□□□□ -0.26
TRAF1-203ENST00000546084 CADPSQ9ULU8 1353 aa13.41□□□□□ -0.26
TRAF1-203ENST00000546084 ZNF644Q9H582 1327 aaPredicted RBP13.39□□□□□ -0.27
TRAF1-203ENST00000546084 CFDP1Q9UEE9 299 aaPredicted RBP13.39□□□□□ -0.27
TRAF1-203ENST00000546084 NBR1Q14596 966 aa13.38□□□□□ -0.27
TRAF1-203ENST00000546084 NESP48681 1621 aa13.38□□□□□ -0.27
TRAF1-203ENST00000546084 ARHGAP35Q9NRY4 1499 aa13.38□□□□□ -0.27
TRAF1-203ENST00000546084 L3MBTL2Q969R5 705 aa13.37□□□□□ -0.27
TRAF1-203ENST00000546084 TMC1Q8TDI8 760 aa13.37□□□□□ -0.27
TRAF1-203ENST00000546084 TOP2BQ02880 1626 aa13.37□□□□□ -0.27
TRAF1-203ENST00000546084 CCER2I3L3R5 266 aa13.37□□□□□ -0.27
TRAF1-203ENST00000546084 ERICH3Q5RHP9 1530 aa13.35□□□□□ -0.27
TRAF1-203ENST00000546084 FGD5Q6ZNL6 1462 aa13.35□□□□□ -0.27
TRAF1-203ENST00000546084 CHGAP10645 457 aaKnown RBP13.35□□□□□ -0.27
TRAF1-203ENST00000546084 WDR97A6NE52 1622 aa13.34□□□□□ -0.27
TRAF1-203ENST00000546084 MPHOSPH9Q99550 1183 aa13.33□□□□□ -0.28
TRAF1-203ENST00000546084 CUX1P39880 1505 aa13.33□□□□□ -0.28
TRAF1-203ENST00000546084 CC2D2AQ9P2K1 1620 aa13.32□□□□□ -0.28
TRAF1-203ENST00000546084 TIMELESSQ9UNS1 1208 aa13.32□□□□□ -0.28
TRAF1-203ENST00000546084 FHAD1B1AJZ9 1412 aa13.31□□□□□ -0.28
TRAF1-203ENST00000546084 TSPY4P0CV99 314 aa13.31□□□□□ -0.28
TRAF1-203ENST00000546084 TSPY10P0CW01 314 aa13.31□□□□□ -0.28
TRAF1-203ENST00000546084 CCDC184Q52MB2 194 aa13.3□□□□□ -0.28
TRAF1-203ENST00000546084 PEG3Q9GZU2 1588 aa13.3□□□□□ -0.28
TRAF1-203ENST00000546084 CCDC136Q96JN2 1154 aa13.29□□□□□ -0.28
TRAF1-203ENST00000546084 FANCD2Q9BXW9 1451 aa13.29□□□□□ -0.28
TRAF1-203ENST00000546084 DCAF11Q8TEB1 546 aa13.28□□□□□ -0.28
TRAF1-203ENST00000546084 MAPKBP1O60336 1514 aa13.28□□□□□ -0.28
TRAF1-203ENST00000546084 CARD11Q9BXL7 1154 aa13.28□□□□□ -0.28
TRAF1-203ENST00000546084 PKD2Q13563 968 aa13.28□□□□□ -0.28
TRAF1-203ENST00000546084 CC2D1BQ5T0F9 858 aaKnown RBP13.27□□□□□ -0.29
TRAF1-203ENST00000546084 PLEKHD1A6NEE1 506 aa13.26□□□□□ -0.29
TRAF1-203ENST00000546084 LRRC9Q6ZRR7 1453 aa13.26□□□□□ -0.29
TRAF1-203ENST00000546084 PDS5BQ9NTI5 1447 aa13.25□□□□□ -0.29
TRAF1-203ENST00000546084 HNRNPMP52272 730 aaKnown RBP eCLIP13.23□□□□□ -0.29
TRAF1-203ENST00000546084 PLPPR3Q6T4P5 718 aa13.23□□□□□ -0.29
TRAF1-203ENST00000546084 MSH5O43196 834 aa13.22□□□□□ -0.29
TRAF1-203ENST00000546084 AQRO60306 1485 aaKnown RBP eCLIP13.21□□□□□ -0.29
TRAF1-203ENST00000546084 NCAPD3P42695 1498 aa13.21□□□□□ -0.3
TRAF1-203ENST00000546084 TNNT2P45379 298 aaPredicted RBP13.2□□□□□ -0.3
TRAF1-203ENST00000546084 TIAM1Q13009 1591 aa13.2□□□□□ -0.3
TRAF1-203ENST00000546084 DAXXQ9UER7 740 aaPredicted RBP13.19□□□□□ -0.3
TRAF1-203ENST00000546084 PPP4R2Q9NY27 417 aa13.18□□□□□ -0.3
TRAF1-203ENST00000546084 CFTRP13569 1480 aa13.18□□□□□ -0.3
TRAF1-203ENST00000546084 BIVM-ERCC5R4GMW8 1640 aa13.18□□□□□ -0.3
TRAF1-203ENST00000546084 WASHC2AQ641Q2 1341 aa13.17□□□□□ -0.3
TRAF1-203ENST00000546084 C11orf95C9JLR9 678 aaPredicted RBP13.17□□□□□ -0.3
TRAF1-203ENST00000546084 NEUROD2Q15784 382 aa13.17□□□□□ -0.3
TRAF1-203ENST00000546084 CCDC18Q5T9S5 1454 aa13.16□□□□□ -0.3
TRAF1-203ENST00000546084 RTL5Q5HYW3 569 aaPredicted RBP13.15□□□□□ -0.3
TRAF1-203ENST00000546084 FMN1Q68DA7 1419 aa13.15□□□□□ -0.3
TRAF1-203ENST00000546084 NBPF8Q3BBV2 869 aa13.15□□□□□ -0.3
TRAF1-203ENST00000546084 FGD6Q6ZV73 1430 aa13.13□□□□□ -0.31
TRAF1-203ENST00000546084 ST20-MTHFSA0A0A6YYL1 179 aa13.13□□□□□ -0.31
TRAF1-203ENST00000546084 NUP155O75694 1391 aa13.12□□□□□ -0.31
TRAF1-203ENST00000546084 ERCC6Q03468 1493 aa13.12□□□□□ -0.31
TRAF1-203ENST00000546084 FANCIQ9NVI1 1328 aa13.11□□□□□ -0.31
TRAF1-203ENST00000546084 CANXP27824 592 aaKnown RBP13.11□□□□□ -0.31
TRAF1-203ENST00000546084 PRKRIP1Q9H875 184 aaPredicted RBP13.11□□□□□ -0.31
TRAF1-203ENST00000546084 ARXQ96QS3 562 aa13.11□□□□□ -0.31
TRAF1-203ENST00000546084 ANP32AP39687 249 aaKnown RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms