RNA–Protein interactions for RNA: ENST00000546084.5

TRAF1-203, Transcript of TNF receptor associated factor 1, humanhuman

TSL 2 BASIC

Gene TRAF1, Length 3,715 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-203ENST00000546084 NISCHQ9Y2I1 1504 aa18.3■□□□□ 0.52
TRAF1-203ENST00000546084 DCAF8L2P0C7V8 631 aa17.53■□□□□ 0.4
TRAF1-203ENST00000546084 SHROOM4Q9ULL8 1493 aa17.33■□□□□ 0.36
TRAF1-203ENST00000546084 SUPT5HO00267 1087 aaKnown RBP17.22■□□□□ 0.35
TRAF1-203ENST00000546084 EHMT2Q96KQ7 1210 aa16.62■□□□□ 0.25
TRAF1-203ENST00000546084 PCGF6Q9BYE7 350 aa16.2■□□□□ 0.18
TRAF1-203ENST00000546084 FAM9AQ8IZU1 332 aaPredicted RBP16.19■□□□□ 0.18
TRAF1-203ENST00000546084 LOC105371045A0A1W2PR82 267 aa15.98■□□□□ 0.15
TRAF1-203ENST00000546084 TTBK1Q5TCY1 1321 aaPredicted RBP15.98■□□□□ 0.15
TRAF1-203ENST00000546084 PPARGC1BQ86YN6 1023 aaKnown RBP15.89■□□□□ 0.13
TRAF1-203ENST00000546084 HRCP23327 699 aa15.87■□□□□ 0.13
TRAF1-203ENST00000546084 CHIC1Q5VXU3 224 aa15.87■□□□□ 0.13
TRAF1-203ENST00000546084 TRIM41Q8WV44 630 aa15.66■□□□□ 0.1
TRAF1-203ENST00000546084 RANGAP1P46060 587 aaPredicted RBP15.61■□□□□ 0.09
TRAF1-203ENST00000546084 MYO15BQ96JP2 1530 aa15.61■□□□□ 0.09
TRAF1-203ENST00000546084 PELP1Q8IZL8 1130 aaKnown RBP15.48■□□□□ 0.07
TRAF1-203ENST00000546084 ZCCHC6Q5VYS8 1495 aaKnown RBP15.45■□□□□ 0.06
TRAF1-203ENST00000546084 MYT1Q01538 1121 aa15.35■□□□□ 0.05
TRAF1-203ENST00000546084 TRIM26Q12899 539 aaPredicted RBP15.33■□□□□ 0.04
TRAF1-203ENST00000546084 ABCC9O60706 1549 aa15.28■□□□□ 0.04
TRAF1-203ENST00000546084 CCER1Q8TC90 406 aaPredicted RBP15.25■□□□□ 0.03
TRAF1-203ENST00000546084 UBTFP17480 764 aaKnown RBP15.22■□□□□ 0.03
TRAF1-203ENST00000546084 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.2■□□□□ 0.02
TRAF1-203ENST00000546084 PABPN1Q86U42 306 aaKnown RBP eCLIP15.18■□□□□ 0.02
TRAF1-203ENST00000546084 DCAF1Q9Y4B6 1507 aa15.16■□□□□ 0.02
TRAF1-203ENST00000546084 ZEB1P37275 1124 aaPredicted RBP15.13■□□□□ 0.01
TRAF1-203ENST00000546084 YTHDC1Q96MU7 727 aaKnown RBP15.08■□□□□ 0
TRAF1-203ENST00000546084 CCDC180Q9P1Z9 1646 aa15.07■□□□□ 0
TRAF1-203ENST00000546084 HNRNPUL2Q1KMD3 747 aaKnown RBP15.01□□□□□ -0.01
TRAF1-203ENST00000546084 SCRIBQ14160 1630 aa14.99□□□□□ -0.01
TRAF1-203ENST00000546084 APLP2Q06481 763 aa14.99□□□□□ -0.01
TRAF1-203ENST00000546084 ATP1B4Q9UN42 357 aaPredicted RBP14.94□□□□□ -0.02
TRAF1-203ENST00000546084 ITGAEP38570 1179 aa14.91□□□□□ -0.02
TRAF1-203ENST00000546084 SCAF1Q9H7N4 1312 aaKnown RBP14.87□□□□□ -0.03
TRAF1-203ENST00000546084 RSF1Q96T23 1441 aaPredicted RBP14.75□□□□□ -0.05
TRAF1-203ENST00000546084 CECR2Q9BXF3 1484 aa14.69□□□□□ -0.06
TRAF1-203ENST00000546084 CENPBP07199 599 aaPredicted RBP14.68□□□□□ -0.06
TRAF1-203ENST00000546084 DIEXFQ68CQ4 756 aaKnown RBP14.68□□□□□ -0.06
TRAF1-203ENST00000546084 ACIN1Q9UKV3 1341 aaKnown RBP14.64□□□□□ -0.07
TRAF1-203ENST00000546084 NEUROD1Q13562 356 aa14.64□□□□□ -0.07
TRAF1-203ENST00000546084 GTF3C3Q9Y5Q9 886 aa14.63□□□□□ -0.07
TRAF1-203ENST00000546084 RB1CC1Q8TDY2 1594 aa14.57□□□□□ -0.08
TRAF1-203ENST00000546084 CSRNP3Q8WYN3 585 aa14.57□□□□□ -0.08
TRAF1-203ENST00000546084 CNGB1Q14028 1251 aaPredicted RBP14.53□□□□□ -0.08
TRAF1-203ENST00000546084 P3H3Q8IVL6 736 aa14.52□□□□□ -0.08
TRAF1-203ENST00000546084 MROH2BQ7Z745 1585 aa14.42□□□□□ -0.1
TRAF1-203ENST00000546084 ARID3CA6NKF2 412 aa14.41□□□□□ -0.1
TRAF1-203ENST00000546084 ZNF316A6NFI3 1004 aaPredicted RBP14.38□□□□□ -0.11
TRAF1-203ENST00000546084 FAM50AQ14320 339 aaKnown RBP14.38□□□□□ -0.11
TRAF1-203ENST00000546084 SOGA1O94964 1423 aa14.37□□□□□ -0.11
TRAF1-203ENST00000546084 ABCC8Q09428 1581 aa14.34□□□□□ -0.11
TRAF1-203ENST00000546084 BCANQ96GW7 911 aa14.32□□□□□ -0.12
TRAF1-203ENST00000546084 ERICH6Q7L0X2 663 aa14.32□□□□□ -0.12
TRAF1-203ENST00000546084 HIRIP3Q9BW71 556 aaPredicted RBP14.31□□□□□ -0.12
TRAF1-203ENST00000546084 MIER1Q8N108 512 aa14.29□□□□□ -0.12
TRAF1-203ENST00000546084 CCDC88BA6NC98 1476 aa14.28□□□□□ -0.12
TRAF1-203ENST00000546084 WIZO95785 1651 aa14.28□□□□□ -0.12
TRAF1-203ENST00000546084 CEP162Q5TB80 1403 aa14.27□□□□□ -0.12
TRAF1-203ENST00000546084 POLR3GLQ9BT43 218 aa14.25□□□□□ -0.13
TRAF1-203ENST00000546084 RUSC2Q8N2Y8 1516 aa14.23□□□□□ -0.13
TRAF1-203ENST00000546084 NACADO15069 1562 aa14.18□□□□□ -0.14
TRAF1-203ENST00000546084 TNIKQ9UKE5 1360 aa14.13□□□□□ -0.15
TRAF1-203ENST00000546084 CLIP1P30622 1438 aa14.12□□□□□ -0.15
TRAF1-203ENST00000546084 WRNQ14191 1432 aaPredicted RBP eCLIP14.1□□□□□ -0.15
TRAF1-203ENST00000546084 SENP3-EIF4A1A0A087X0R7 540 aa14.1□□□□□ -0.15
TRAF1-203ENST00000546084 PRKCSHP14314 528 aaPredicted RBP14.09□□□□□ -0.15
TRAF1-203ENST00000546084 DDX10Q13206 875 aaKnown RBP14.08□□□□□ -0.15
TRAF1-203ENST00000546084 KANK4Q5T7N3 995 aaPredicted RBP14.08□□□□□ -0.15
TRAF1-203ENST00000546084 TRIM52Q96A61 297 aa14.06□□□□□ -0.16
TRAF1-203ENST00000546084 BAZ1AQ9NRL2 1556 aaPredicted RBP14.04□□□□□ -0.16
TRAF1-203ENST00000546084 CHIC2Q9UKJ5 165 aa14.04□□□□□ -0.16
TRAF1-203ENST00000546084 ZNF326Q5BKZ1 582 aaKnown RBP14.02□□□□□ -0.16
TRAF1-203ENST00000546084 FBLN2P98095 1184 aa14.02□□□□□ -0.17
TRAF1-203ENST00000546084 SIN3AQ96ST3 1273 aa14.01□□□□□ -0.17
TRAF1-203ENST00000546084 GOLGA3Q08378 1498 aa14.01□□□□□ -0.17
TRAF1-203ENST00000546084 NEFLP07196 543 aa13.99□□□□□ -0.17
TRAF1-203ENST00000546084 EEA1Q15075 1411 aa13.98□□□□□ -0.17
TRAF1-203ENST00000546084 SLC24A1O60721 1099 aa13.96□□□□□ -0.17
TRAF1-203ENST00000546084 BCL11AQ9H165 835 aa13.94□□□□□ -0.18
TRAF1-203ENST00000546084 BAZ1BQ9UIG0 1483 aaKnown RBP13.93□□□□□ -0.18
TRAF1-203ENST00000546084 KCNH8Q96L42 1107 aa13.92□□□□□ -0.18
TRAF1-203ENST00000546084 IRX6P78412 446 aaPredicted RBP13.92□□□□□ -0.18
TRAF1-203ENST00000546084 TOP2AP11388 1531 aaKnown RBP13.91□□□□□ -0.18
TRAF1-203ENST00000546084 UNC13AQ9UPW8 1703 aa13.89□□□□□ -0.19
TRAF1-203ENST00000546084 ZNF777Q9ULD5 760 aaPredicted RBP13.89□□□□□ -0.19
TRAF1-203ENST00000546084 RAPGEF2Q9Y4G8 1499 aa13.88□□□□□ -0.19
TRAF1-203ENST00000546084 FKBP8Q14318 412 aa13.88□□□□□ -0.19
TRAF1-203ENST00000546084 SUPT16HQ9Y5B9 1047 aaKnown RBP13.88□□□□□ -0.19
TRAF1-203ENST00000546084 CEP164Q9UPV0 1460 aa13.87□□□□□ -0.19
TRAF1-203ENST00000546084 RRP7BPQ9NSQ0 103 aa13.87□□□□□ -0.19
TRAF1-203ENST00000546084 SMARCA2P51531 1590 aa13.86□□□□□ -0.19
TRAF1-203ENST00000546084 VPS8Q8N3P4 1428 aa13.84□□□□□ -0.19
TRAF1-203ENST00000546084 ANP32CO43423 234 aa13.81□□□□□ -0.2
TRAF1-203ENST00000546084 SMARCA4P51532 1647 aa13.81□□□□□ -0.2
TRAF1-203ENST00000546084 EIF4G1Q04637 1599 aaKnown RBP13.8□□□□□ -0.2
TRAF1-203ENST00000546084 BICRAQ9NZM4 1560 aa13.79□□□□□ -0.2
TRAF1-203ENST00000546084 MYT1LQ9UL68 1186 aa13.78□□□□□ -0.2
TRAF1-203ENST00000546084 SALL2Q9Y467 1007 aaPredicted RBP13.77□□□□□ -0.21
TRAF1-203ENST00000546084 FAM9BQ8IZU0 186 aa13.76□□□□□ -0.21
TRAF1-203ENST00000546084 FOXD1Q16676 465 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms