RNA–Protein interactions for RNA: ENST00000546080.5

SRP54-202, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 2,187 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-202ENST00000546080 BCL11AQ9H165 835 aa20.1■□□□□ 0.81
SRP54-202ENST00000546080 PPP1R15AO75807 674 aaPredicted RBP20.1■□□□□ 0.81
SRP54-202ENST00000546080 SIN3AQ96ST3 1273 aa20.08■□□□□ 0.81
SRP54-202ENST00000546080 RBM19Q9Y4C8 960 aaKnown RBP20.08■□□□□ 0.8
SRP54-202ENST00000546080 CCER2I3L3R5 266 aa20.07■□□□□ 0.8
SRP54-202ENST00000546080 LRRC9Q6ZRR7 1453 aa20.06■□□□□ 0.8
SRP54-202ENST00000546080 TIMELESSQ9UNS1 1208 aa20.06■□□□□ 0.8
SRP54-202ENST00000546080 ANP32CO43423 234 aa20.04■□□□□ 0.8
SRP54-202ENST00000546080 PHLDB1Q86UU1 1377 aa20.03■□□□□ 0.8
SRP54-202ENST00000546080 FAM50AQ14320 339 aaKnown RBP20.02■□□□□ 0.8
SRP54-202ENST00000546080 TRIM52Q96A61 297 aa20.02■□□□□ 0.8
SRP54-202ENST00000546080 HMGXB3Q12766 1538 aa20.01■□□□□ 0.79
SRP54-202ENST00000546080 CC2D2AQ9P2K1 1620 aa19.98■□□□□ 0.79
SRP54-202ENST00000546080 HIRIP3Q9BW71 556 aaPredicted RBP19.97■□□□□ 0.79
SRP54-202ENST00000546080 CFAP43Q8NDM7 1665 aa19.97■□□□□ 0.79
SRP54-202ENST00000546080 CFTRP13569 1480 aa19.96■□□□□ 0.79
SRP54-202ENST00000546080 FHAD1B1AJZ9 1412 aa19.95■□□□□ 0.78
SRP54-202ENST00000546080 NCAPD3P42695 1498 aa19.94■□□□□ 0.78
SRP54-202ENST00000546080 IGF1RP08069 1367 aa19.94■□□□□ 0.78
SRP54-202ENST00000546080 DNAJC5BQ9UF47 199 aa19.93■□□□□ 0.78
SRP54-202ENST00000546080 PCF11O94913 1555 aaKnown RBP19.91■□□□□ 0.78
SRP54-202ENST00000546080 CARMIL1Q5VZK9 1371 aa19.89■□□□□ 0.78
SRP54-202ENST00000546080 TONSLQ96HA7 1378 aa19.87■□□□□ 0.77
SRP54-202ENST00000546080 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.85■□□□□ 0.77
SRP54-202ENST00000546080 PRDM2Q13029 1718 aa19.84■□□□□ 0.77
SRP54-202ENST00000546080 ATP1B4Q9UN42 357 aaPredicted RBP19.83■□□□□ 0.77
SRP54-202ENST00000546080 MSH5O43196 834 aa19.83■□□□□ 0.76
SRP54-202ENST00000546080 FANCIQ9NVI1 1328 aa19.8■□□□□ 0.76
SRP54-202ENST00000546080 P3H3Q8IVL6 736 aa19.8■□□□□ 0.76
SRP54-202ENST00000546080 FYCO1Q9BQS8 1478 aa19.79■□□□□ 0.76
SRP54-202ENST00000546080 CDK11AQ9UQ88 783 aaPredicted RBP19.79■□□□□ 0.76
SRP54-202ENST00000546080 HNRNPUQ00839 825 aaKnown RBP eCLIP19.78■□□□□ 0.76
SRP54-202ENST00000546080 CCDC18Q5T9S5 1454 aa19.77■□□□□ 0.76
SRP54-202ENST00000546080 FGD5Q6ZNL6 1462 aa19.77■□□□□ 0.75
SRP54-202ENST00000546080 ERICH6Q7L0X2 663 aa19.76■□□□□ 0.75
SRP54-202ENST00000546080 FHOD3Q2V2M9 1422 aa19.75■□□□□ 0.75
SRP54-202ENST00000546080 UACAQ9BZF9 1416 aa19.74■□□□□ 0.75
SRP54-202ENST00000546080 FGD6Q6ZV73 1430 aa19.73■□□□□ 0.75
SRP54-202ENST00000546080 CASKIN1Q8WXD9 1431 aa19.73■□□□□ 0.75
SRP54-202ENST00000546080 EFCAB5A4FU69 1503 aa19.72■□□□□ 0.75
SRP54-202ENST00000546080 AQRO60306 1485 aaKnown RBP eCLIP19.72■□□□□ 0.757e-11■■■■□ 23.2
SRP54-202ENST00000546080 IRX6P78412 446 aaPredicted RBP19.71■□□□□ 0.75
SRP54-202ENST00000546080 HFM1A2PYH4 1435 aa19.7■□□□□ 0.74
SRP54-202ENST00000546080 PTPN23Q9H3S7 1636 aa19.69■□□□□ 0.74
SRP54-202ENST00000546080 ERICH6BQ5W0A0 696 aa19.67■□□□□ 0.74
SRP54-202ENST00000546080 PTPRKQ15262 1439 aa19.64■□□□□ 0.73
SRP54-202ENST00000546080 KDM5BQ9UGL1 1544 aa19.63■□□□□ 0.73
SRP54-202ENST00000546080 CADPSQ9ULU8 1353 aa19.63■□□□□ 0.73
SRP54-202ENST00000546080 MTUS2Q5JR59 1369 aa19.62■□□□□ 0.73
SRP54-202ENST00000546080 PPP4R2Q9NY27 417 aa19.62■□□□□ 0.73
SRP54-202ENST00000546080 NAIPQ13075 1403 aa19.62■□□□□ 0.73
SRP54-202ENST00000546080 FMN1Q68DA7 1419 aa19.62■□□□□ 0.73
SRP54-202ENST00000546080 WASHC2AQ641Q2 1341 aa19.6■□□□□ 0.73
SRP54-202ENST00000546080 CTTNBP2Q8WZ74 1663 aa19.59■□□□□ 0.73
SRP54-202ENST00000546080 HSPA5P11021 654 aaKnown RBP19.58■□□□□ 0.72
SRP54-202ENST00000546080 SNAPC4Q5SXM2 1469 aa19.57■□□□□ 0.72
SRP54-202ENST00000546080 MYT1LQ9UL68 1186 aa19.57■□□□□ 0.72
SRP54-202ENST00000546080 NCOA2Q15596 1464 aa19.56■□□□□ 0.72
SRP54-202ENST00000546080 CNTLNQ9NXG0 1405 aa19.56■□□□□ 0.72
SRP54-202ENST00000546080 CUL7Q14999 1698 aa19.55■□□□□ 0.72
SRP54-202ENST00000546080 MYOM3Q5VTT5 1437 aa19.55■□□□□ 0.72
SRP54-202ENST00000546080 EIF4G2P78344 907 aaKnown RBP eCLIP19.53■□□□□ 0.728e-7■■■■■ 28.7
SRP54-202ENST00000546080 ABCA10Q8WWZ4 1543 aa19.52■□□□□ 0.72
SRP54-202ENST00000546080 SUPT6HQ7KZ85 1726 aaKnown RBP19.5■□□□□ 0.71
SRP54-202ENST00000546080 RAD54L2Q9Y4B4 1467 aa19.49■□□□□ 0.71
SRP54-202ENST00000546080 HECW1Q76N89 1606 aa19.49■□□□□ 0.71
SRP54-202ENST00000546080 CCDC184Q52MB2 194 aa19.49■□□□□ 0.71
SRP54-202ENST00000546080 LRRIQ1Q96JM4 1722 aa19.48■□□□□ 0.71
SRP54-202ENST00000546080 B4GALNT3Q6L9W6 998 aa19.48■□□□□ 0.71
SRP54-202ENST00000546080 FANCD2Q9BXW9 1451 aa19.47■□□□□ 0.71
SRP54-202ENST00000546080 ZBED9Q6R2W3 1325 aa19.47■□□□□ 0.71
SRP54-202ENST00000546080 EHBP1L1Q8N3D4 1523 aa19.47■□□□□ 0.71
SRP54-202ENST00000546080 DNMBPQ6XZF7 1577 aa19.47■□□□□ 0.71
SRP54-202ENST00000546080 FAM9BQ8IZU0 186 aa19.47■□□□□ 0.71
SRP54-202ENST00000546080 PRKRIP1Q9H875 184 aaPredicted RBP19.46■□□□□ 0.71
SRP54-202ENST00000546080 GCC2Q8IWJ2 1684 aa19.46■□□□□ 0.7
SRP54-202ENST00000546080 THOC2Q8NI27 1593 aaKnown RBP19.45■□□□□ 0.7
SRP54-202ENST00000546080 MRS2Q9HD23 443 aa19.45■□□□□ 0.7
SRP54-202ENST00000546080 POLA1P09884 1462 aaPredicted RBP19.44■□□□□ 0.7
SRP54-202ENST00000546080 GRIN2BQ13224 1484 aa19.44■□□□□ 0.7
SRP54-202ENST00000546080 SAMD9Q5K651 1589 aa19.44■□□□□ 0.7
SRP54-202ENST00000546080 NCOA1Q15788 1441 aa19.43■□□□□ 0.7
SRP54-202ENST00000546080 CCDC7Q96M83 1385 aa19.43■□□□□ 0.7
SRP54-202ENST00000546080 RRP7BPQ9NSQ0 103 aa19.43■□□□□ 0.7
SRP54-202ENST00000546080 DENND4BO75064 1496 aaPredicted RBP19.43■□□□□ 0.7
SRP54-202ENST00000546080 UGGT2Q9NYU1 1516 aa19.42■□□□□ 0.7
SRP54-202ENST00000546080 DEKP35659 375 aaKnown RBP19.42■□□□□ 0.7
SRP54-202ENST00000546080 TOPBP1Q92547 1522 aa19.4■□□□□ 0.7
SRP54-202ENST00000546080 CHIC2Q9UKJ5 165 aa19.39■□□□□ 0.69
SRP54-202ENST00000546080 NOP58Q9Y2X3 529 aaKnown RBP19.39■□□□□ 0.69
SRP54-202ENST00000546080 ARHGEF11O15085 1522 aa19.38■□□□□ 0.69
SRP54-202ENST00000546080 AKNAQ7Z591 1439 aa19.38■□□□□ 0.69
SRP54-202ENST00000546080 C11orf95C9JLR9 678 aaPredicted RBP19.38■□□□□ 0.69
SRP54-202ENST00000546080 TCOF1Q13428 1488 aaKnown RBP19.38■□□□□ 0.69
SRP54-202ENST00000546080 L3MBTL2Q969R5 705 aa19.37■□□□□ 0.69
SRP54-202ENST00000546080 KDM6BO15054 1643 aa19.35■□□□□ 0.69
SRP54-202ENST00000546080 MPHOSPH9Q99550 1183 aa19.35■□□□□ 0.69
SRP54-202ENST00000546080 MAGI3Q5TCQ9 1506 aa19.33■□□□□ 0.68
SRP54-202ENST00000546080 KIF21AQ7Z4S6 1674 aa19.33■□□□□ 0.68
SRP54-202ENST00000546080 ABCA5Q8WWZ7 1642 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms