RNA–Protein interactions for RNA: ENST00000540166.5

DDB1-217, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 3,906 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-217ENST00000540166 MAGI1Q96QZ7 1491 aaPredicted RBP12.84□□□□□ -0.35
DDB1-217ENST00000540166 FAM69CQ0P6D2 419 aa12.84□□□□□ -0.35
DDB1-217ENST00000540166 SYNJ2O15056 1496 aa12.83□□□□□ -0.36
DDB1-217ENST00000540166 SYNJ1O43426 1573 aa12.82□□□□□ -0.36
DDB1-217ENST00000540166 KCNH8Q96L42 1107 aa12.82□□□□□ -0.36
DDB1-217ENST00000540166 CARMIL1Q5VZK9 1371 aa12.82□□□□□ -0.36
DDB1-217ENST00000540166 CARMIL2Q6F5E8 1435 aa12.82□□□□□ -0.36
DDB1-217ENST00000540166 CUX1P39880 1505 aa12.82□□□□□ -0.36
DDB1-217ENST00000540166 FHAD1B1AJZ9 1412 aa12.81□□□□□ -0.36
DDB1-217ENST00000540166 EIF4G3O43432 1585 aaKnown RBP12.8□□□□□ -0.36
DDB1-217ENST00000540166 BCL11AQ9H165 835 aa12.78□□□□□ -0.36
DDB1-217ENST00000540166 CSRNP3Q8WYN3 585 aa12.78□□□□□ -0.36
DDB1-217ENST00000540166 ARHGEF11O15085 1522 aa12.77□□□□□ -0.37
DDB1-217ENST00000540166 PRG4Q92954 1404 aaPredicted RBP12.75□□□□□ -0.37
DDB1-217ENST00000540166 PTPRGP23470 1445 aa12.74□□□□□ -0.37
DDB1-217ENST00000540166 ABCA10Q8WWZ4 1543 aa12.73□□□□□ -0.37
DDB1-217ENST00000540166 APLP2Q06481 763 aa12.71□□□□□ -0.37
DDB1-217ENST00000540166 PRDM2Q13029 1718 aa12.71□□□□□ -0.38
DDB1-217ENST00000540166 PLPPR3Q6T4P5 718 aa12.7□□□□□ -0.38
DDB1-217ENST00000540166 GRIN2AQ12879 1464 aa12.69□□□□□ -0.38
DDB1-217ENST00000540166 ARID4BQ4LE39 1312 aaPredicted RBP12.67□□□□□ -0.38
DDB1-217ENST00000540166 CDK11AQ9UQ88 783 aaPredicted RBP12.67□□□□□ -0.38
DDB1-217ENST00000540166 ANP32EQ9BTT0 268 aa12.67□□□□□ -0.38
DDB1-217ENST00000540166 ZNF316A6NFI3 1004 aaPredicted RBP12.66□□□□□ -0.38
DDB1-217ENST00000540166 IGF1RP08069 1367 aa12.65□□□□□ -0.38
DDB1-217ENST00000540166 PLEKHD1A6NEE1 506 aa12.64□□□□□ -0.39
DDB1-217ENST00000540166 ERICH6Q7L0X2 663 aa12.63□□□□□ -0.39
DDB1-217ENST00000540166 ESF1Q9H501 851 aaKnown RBP12.63□□□□□ -0.39
DDB1-217ENST00000540166 RIMBP3CA6NJZ7 1639 aa12.63□□□□□ -0.39
DDB1-217ENST00000540166 RIMBP3BA6NNM3 1639 aa12.63□□□□□ -0.39
DDB1-217ENST00000540166 RIMBP3Q9UFD9 1639 aa12.63□□□□□ -0.39
DDB1-217ENST00000540166 TARBP1Q13395 1621 aaKnown RBP12.63□□□□□ -0.39
DDB1-217ENST00000540166 TOP2BQ02880 1626 aa12.62□□□□□ -0.39
DDB1-217ENST00000540166 CHD1O14646 1710 aa12.6□□□□□ -0.39
DDB1-217ENST00000540166 TNIKQ9UKE5 1360 aa12.6□□□□□ -0.39
DDB1-217ENST00000540166 ARAP1Q96P48 1450 aa12.59□□□□□ -0.39
DDB1-217ENST00000540166 ERICH3Q5RHP9 1530 aa12.58□□□□□ -0.4
DDB1-217ENST00000540166 RAPGEF2Q9Y4G8 1499 aa12.58□□□□□ -0.4
DDB1-217ENST00000540166 WDR97A6NE52 1622 aa12.57□□□□□ -0.4
DDB1-217ENST00000540166 KIAA0586Q9BVV6 1533 aa12.55□□□□□ -0.4
DDB1-217ENST00000540166 CLSPNQ9HAW4 1339 aa12.52□□□□□ -0.4
DDB1-217ENST00000540166 MIER1Q8N108 512 aa12.52□□□□□ -0.41
DDB1-217ENST00000540166 GOLGA3Q08378 1498 aa12.51□□□□□ -0.41
DDB1-217ENST00000540166 ZNF777Q9ULD5 760 aaPredicted RBP12.51□□□□□ -0.41
DDB1-217ENST00000540166 NUP160Q12769 1436 aa12.5□□□□□ -0.41
DDB1-217ENST00000540166 NEFLP07196 543 aa12.48□□□□□ -0.41
DDB1-217ENST00000540166 EEA1Q15075 1411 aa12.48□□□□□ -0.41
DDB1-217ENST00000540166 PBRM1Q86U86 1689 aa12.48□□□□□ -0.41
DDB1-217ENST00000540166 ADAMTS12P58397 1594 aa12.48□□□□□ -0.41
DDB1-217ENST00000540166 MLECQ14165 292 aa12.46□□□□□ -0.41
DDB1-217ENST00000540166 CEP170Q5SW79 1584 aa12.46□□□□□ -0.41
DDB1-217ENST00000540166 BIVM-ERCC5R4GMW8 1640 aa12.45□□□□□ -0.42
DDB1-217ENST00000540166 UACAQ9BZF9 1416 aa12.45□□□□□ -0.42
DDB1-217ENST00000540166 BCANQ96GW7 911 aa12.44□□□□□ -0.42
DDB1-217ENST00000540166 ABCA5Q8WWZ7 1642 aa12.44□□□□□ -0.42
DDB1-217ENST00000540166 SUPT16HQ9Y5B9 1047 aaKnown RBP12.41□□□□□ -0.42
DDB1-217ENST00000540166 RUSC2Q8N2Y8 1516 aa12.4□□□□□ -0.42
DDB1-217ENST00000540166 PLB1Q6P1J6 1458 aa12.4□□□□□ -0.42
DDB1-217ENST00000540166 CUL7Q14999 1698 aa12.4□□□□□ -0.42
DDB1-217ENST00000540166 CLASP1Q7Z460 1538 aa12.38□□□□□ -0.43
DDB1-217ENST00000540166 IQGAP2Q13576 1575 aa12.38□□□□□ -0.43
DDB1-217ENST00000540166 TSHZ2Q9NRE2 1034 aa12.38□□□□□ -0.43
DDB1-217ENST00000540166 EFCAB2Q5VUJ9 269 aa12.37□□□□□ -0.43
DDB1-217ENST00000540166 ASXL2Q76L83 1435 aa12.36□□□□□ -0.43
DDB1-217ENST00000540166 CD109Q6YHK3 1445 aa12.34□□□□□ -0.43
DDB1-217ENST00000540166 ERCC6L2Q5T890 1561 aa12.32□□□□□ -0.44
DDB1-217ENST00000540166 TEX14Q8IWB6 1497 aa12.32□□□□□ -0.44
DDB1-217ENST00000540166 PRKCSHP14314 528 aaPredicted RBP12.31□□□□□ -0.44
DDB1-217ENST00000540166 FHOD3Q2V2M9 1422 aa12.31□□□□□ -0.44
DDB1-217ENST00000540166 CEP162Q5TB80 1403 aa12.3□□□□□ -0.44
DDB1-217ENST00000540166 CLIP1P30622 1438 aa12.29□□□□□ -0.44
DDB1-217ENST00000540166 ABCC2Q92887 1545 aa12.29□□□□□ -0.44
DDB1-217ENST00000540166 MTUS2Q5JR59 1369 aa12.28□□□□□ -0.44
DDB1-217ENST00000540166 RAPGEF3O95398 923 aa12.28□□□□□ -0.44
DDB1-217ENST00000540166 CFDP1Q9UEE9 299 aaPredicted RBP12.27□□□□□ -0.44
DDB1-217ENST00000540166 FKBP8Q14318 412 aa12.27□□□□□ -0.45
DDB1-217ENST00000540166 ABCC10Q5T3U5 1492 aa12.27□□□□□ -0.45
DDB1-217ENST00000540166 FMN1Q68DA7 1419 aa12.26□□□□□ -0.45
DDB1-217ENST00000540166 TSPY4P0CV99 314 aa12.25□□□□□ -0.45
DDB1-217ENST00000540166 TSPY10P0CW01 314 aa12.25□□□□□ -0.45
DDB1-217ENST00000540166 ITGAEP38570 1179 aa12.22□□□□□ -0.45
DDB1-217ENST00000540166 PRXQ9BXM0 1461 aa12.2□□□□□ -0.46
DDB1-217ENST00000540166 STAG3Q9UJ98 1225 aa12.2□□□□□ -0.46
DDB1-217ENST00000540166 WDR7Q9Y4E6 1490 aa12.2□□□□□ -0.46
DDB1-217ENST00000540166 TSPOAP1O95153 1857 aa12.2□□□□□ -0.46
DDB1-217ENST00000540166 POGZQ7Z3K3 1410 aa12.19□□□□□ -0.46
DDB1-217ENST00000540166 KDM6BO15054 1643 aa12.19□□□□□ -0.46
DDB1-217ENST00000540166 GGT6Q6P531 493 aa12.18□□□□□ -0.46
DDB1-217ENST00000540166 RBM19Q9Y4C8 960 aaKnown RBP12.18□□□□□ -0.46
DDB1-217ENST00000540166 CCNB3Q8WWL7 1395 aa12.17□□□□□ -0.46
DDB1-217ENST00000540166 FAM50AQ14320 339 aaKnown RBP12.17□□□□□ -0.46
DDB1-217ENST00000540166 UGGT2Q9NYU1 1516 aa12.16□□□□□ -0.46
DDB1-217ENST00000540166 PHLDB1Q86UU1 1377 aa12.14□□□□□ -0.47
DDB1-217ENST00000540166 SPAG9O60271 1321 aaKnown RBP12.14□□□□□ -0.47
DDB1-217ENST00000540166 DISP1Q96F81 1524 aa12.13□□□□□ -0.47
DDB1-217ENST00000540166 KIAA0556O60303 1618 aa12.12□□□□□ -0.47
DDB1-217ENST00000540166 RTL5Q5HYW3 569 aaPredicted RBP12.12□□□□□ -0.47
DDB1-217ENST00000540166 UHRF1BP1LA0JNW5 1464 aa12.12□□□□□ -0.47
DDB1-217ENST00000540166 AFAP1Q8N556 730 aa12.11□□□□□ -0.47
DDB1-217ENST00000540166 EPRSP07814 1512 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms