RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 RAD54L2Q9Y4B4 1467 aa29.51■■■□□ 2.31
TMEM260-203ENST00000539559 ABCA10Q8WWZ4 1543 aa29.51■■■□□ 2.31
TMEM260-203ENST00000539559 SUPT16HQ9Y5B9 1047 aaKnown RBP29.5■■■□□ 2.31
TMEM260-203ENST00000539559 CARMIL1Q5VZK9 1371 aa29.46■■■□□ 2.31
TMEM260-203ENST00000539559 KIF21AQ7Z4S6 1674 aa29.45■■■□□ 2.3
TMEM260-203ENST00000539559 KCNH8Q96L42 1107 aa29.41■■■□□ 2.3
TMEM260-203ENST00000539559 RRBP1Q9P2E9 1410 aaKnown RBP29.38■■■□□ 2.29
TMEM260-203ENST00000539559 CCNB3Q8WWL7 1395 aa29.34■■■□□ 2.29
TMEM260-203ENST00000539559 WDR97A6NE52 1622 aa29.29■■■□□ 2.28
TMEM260-203ENST00000539559 ARHGAP35Q9NRY4 1499 aa29.29■■■□□ 2.28
TMEM260-203ENST00000539559 MRC2Q9UBG0 1479 aa29.23■■■□□ 2.27
TMEM260-203ENST00000539559 CUL7Q14999 1698 aa29.23■■■□□ 2.27
TMEM260-203ENST00000539559 RAB3GAP2Q9H2M9 1393 aa29.23■■■□□ 2.27
TMEM260-203ENST00000539559 TDRD9Q8NDG6 1382 aaKnown RBP29.22■■■□□ 2.27
TMEM260-203ENST00000539559 ABCA5Q8WWZ7 1642 aa29.19■■■□□ 2.26
TMEM260-203ENST00000539559 GAPVD1Q14C86 1478 aa29.18■■■□□ 2.26
TMEM260-203ENST00000539559 TSHZ2Q9NRE2 1034 aa29.17■■■□□ 2.26
TMEM260-203ENST00000539559 BCANQ96GW7 911 aa29.17■■■□□ 2.26
TMEM260-203ENST00000539559 TARBP1Q13395 1621 aaKnown RBP29.15■■■□□ 2.26
TMEM260-203ENST00000539559 SIN3AQ96ST3 1273 aa29.15■■■□□ 2.26
TMEM260-203ENST00000539559 MAPKBP1O60336 1514 aa29.13■■■□□ 2.25
TMEM260-203ENST00000539559 DDX10Q13206 875 aaKnown RBP29.11■■■□□ 2.25
TMEM260-203ENST00000539559 HIRIP3Q9BW71 556 aaPredicted RBP29.09■■■□□ 2.25
TMEM260-203ENST00000539559 FAM50AQ14320 339 aaKnown RBP29.07■■■□□ 2.24
TMEM260-203ENST00000539559 P3H3Q8IVL6 736 aa29.05■■■□□ 2.24
TMEM260-203ENST00000539559 ATP1B4Q9UN42 357 aaPredicted RBP29.04■■■□□ 2.24
TMEM260-203ENST00000539559 WDR62O43379 1518 aa29.03■■■□□ 2.24
TMEM260-203ENST00000539559 ERCC6Q03468 1493 aa29.01■■■□□ 2.23
TMEM260-203ENST00000539559 PHLDB1Q86UU1 1377 aa29■■■□□ 2.23
TMEM260-203ENST00000539559 SETD5Q9C0A6 1442 aa28.99■■■□□ 2.23
TMEM260-203ENST00000539559 TIAM1Q13009 1591 aa28.98■■■□□ 2.23
TMEM260-203ENST00000539559 CTTNBP2Q8WZ74 1663 aa28.96■■■□□ 2.23
TMEM260-203ENST00000539559 IFT140Q96RY7 1462 aa28.96■■■□□ 2.23
TMEM260-203ENST00000539559 FKBP8Q14318 412 aa28.96■■■□□ 2.23
TMEM260-203ENST00000539559 AQRO60306 1485 aaKnown RBP eCLIP28.94■■■□□ 2.22
TMEM260-203ENST00000539559 LRRC9Q6ZRR7 1453 aa28.91■■■□□ 2.22
TMEM260-203ENST00000539559 EFCAB5A4FU69 1503 aa28.91■■■□□ 2.22
TMEM260-203ENST00000539559 PBRM1Q86U86 1689 aa28.9■■■□□ 2.22
TMEM260-203ENST00000539559 FHAD1B1AJZ9 1412 aa28.9■■■□□ 2.22
TMEM260-203ENST00000539559 GRIN2BQ13224 1484 aa28.87■■■□□ 2.21
TMEM260-203ENST00000539559 TRIM52Q96A61 297 aa28.86■■■□□ 2.21
TMEM260-203ENST00000539559 PPP1R15AO75807 674 aaPredicted RBP28.83■■■□□ 2.21
TMEM260-203ENST00000539559 ZNF608Q9ULD9 1512 aaPredicted RBP28.82■■■□□ 2.2
TMEM260-203ENST00000539559 FHOD3Q2V2M9 1422 aa28.82■■■□□ 2.2
TMEM260-203ENST00000539559 MAP3K1Q13233 1512 aa28.81■■■□□ 2.2
TMEM260-203ENST00000539559 THOC2Q8NI27 1593 aaKnown RBP28.81■■■□□ 2.2
TMEM260-203ENST00000539559 ADAMTS12P58397 1594 aa28.78■■■□□ 2.2
TMEM260-203ENST00000539559 ANP32EQ9BTT0 268 aa28.76■■■□□ 2.19
TMEM260-203ENST00000539559 PCF11O94913 1555 aaKnown RBP28.74■■■□□ 2.19
TMEM260-203ENST00000539559 FMN1Q68DA7 1419 aa28.71■■■□□ 2.19
TMEM260-203ENST00000539559 SAMD9Q5K651 1589 aa28.7■■■□□ 2.19
TMEM260-203ENST00000539559 FYCO1Q9BQS8 1478 aa28.69■■■□□ 2.18
TMEM260-203ENST00000539559 CASKIN1Q8WXD9 1431 aa28.69■■■□□ 2.18
TMEM260-203ENST00000539559 EIF4G3O43432 1585 aaKnown RBP28.68■■■□□ 2.18
TMEM260-203ENST00000539559 ANP32CO43423 234 aa28.67■■■□□ 2.18
TMEM260-203ENST00000539559 NEFLP07196 543 aa28.64■■■□□ 2.18
TMEM260-203ENST00000539559 SNAPC4Q5SXM2 1469 aa28.63■■■□□ 2.17
TMEM260-203ENST00000539559 CFAP43Q8NDM7 1665 aa28.62■■■□□ 2.17
TMEM260-203ENST00000539559 IQGAP2Q13576 1575 aa28.61■■■□□ 2.17
TMEM260-203ENST00000539559 CCER2I3L3R5 266 aa28.56■■■□□ 2.16
TMEM260-203ENST00000539559 TIMELESSQ9UNS1 1208 aa28.56■■■□□ 2.16
TMEM260-203ENST00000539559 TONSLQ96HA7 1378 aa28.56■■■□□ 2.16
TMEM260-203ENST00000539559 RBM19Q9Y4C8 960 aaKnown RBP28.56■■■□□ 2.16
TMEM260-203ENST00000539559 MAGI1Q96QZ7 1491 aaPredicted RBP28.54■■■□□ 2.16
TMEM260-203ENST00000539559 GRIN2AQ12879 1464 aa28.52■■■□□ 2.16
TMEM260-203ENST00000539559 KIAA0586Q9BVV6 1533 aa28.49■■■□□ 2.15
TMEM260-203ENST00000539559 PTPRKQ15262 1439 aa28.48■■■□□ 2.15
TMEM260-203ENST00000539559 IRX6P78412 446 aaPredicted RBP28.47■■■□□ 2.15
TMEM260-203ENST00000539559 UGGT2Q9NYU1 1516 aa28.46■■■□□ 2.15
TMEM260-203ENST00000539559 CHMP7Q8WUX9 453 aaPredicted RBP28.46■■■□□ 2.15
TMEM260-203ENST00000539559 CCDC18Q5T9S5 1454 aa28.46■■■□□ 2.15
TMEM260-203ENST00000539559 FGD6Q6ZV73 1430 aa28.45■■■□□ 2.15
TMEM260-203ENST00000539559 SYNJ2O15056 1496 aa28.45■■■□□ 2.15
TMEM260-203ENST00000539559 MTUS2Q5JR59 1369 aa28.4■■■□□ 2.14
TMEM260-203ENST00000539559 HNRNPUQ00839 825 aaKnown RBP eCLIP28.39■■■□□ 2.14
TMEM260-203ENST00000539559 FBLN2P98095 1184 aa28.37■■■□□ 2.13
TMEM260-203ENST00000539559 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.36■■■□□ 2.13
TMEM260-203ENST00000539559 LRRIQ1Q96JM4 1722 aa28.34■■■□□ 2.13
TMEM260-203ENST00000539559 UACAQ9BZF9 1416 aa28.33■■■□□ 2.13
TMEM260-203ENST00000539559 CHIC2Q9UKJ5 165 aa28.32■■■□□ 2.12
TMEM260-203ENST00000539559 HFM1A2PYH4 1435 aa28.31■■■□□ 2.12
TMEM260-203ENST00000539559 RRP7BPQ9NSQ0 103 aa28.31■■■□□ 2.12
TMEM260-203ENST00000539559 HECW1Q76N89 1606 aa28.31■■■□□ 2.12
TMEM260-203ENST00000539559 PTPN23Q9H3S7 1636 aa28.31■■■□□ 2.12
TMEM260-203ENST00000539559 DISP1Q96F81 1524 aa28.31■■■□□ 2.12
TMEM260-203ENST00000539559 CEP170Q5SW79 1584 aa28.3■■■□□ 2.12
TMEM260-203ENST00000539559 KIAA0556O60303 1618 aa28.3■■■□□ 2.12
TMEM260-203ENST00000539559 NAIPQ13075 1403 aa28.29■■■□□ 2.12
TMEM260-203ENST00000539559 MSH5O43196 834 aa28.26■■■□□ 2.12
TMEM260-203ENST00000539559 NUP160Q12769 1436 aa28.26■■■□□ 2.11
TMEM260-203ENST00000539559 HSPA5P11021 654 aaKnown RBP28.25■■■□□ 2.11
TMEM260-203ENST00000539559 WASHC2AQ641Q2 1341 aa28.24■■■□□ 2.11
TMEM260-203ENST00000539559 EHBP1L1Q8N3D4 1523 aa28.24■■■□□ 2.11
TMEM260-203ENST00000539559 CCDC184Q52MB2 194 aa28.23■■■□□ 2.11
TMEM260-203ENST00000539559 NCOA2Q15596 1464 aa28.23■■■□□ 2.11
TMEM260-203ENST00000539559 EPRSP07814 1512 aaKnown RBP28.23■■■□□ 2.11
TMEM260-203ENST00000539559 KDM5BQ9UGL1 1544 aa28.23■■■□□ 2.11
TMEM260-203ENST00000539559 BCL11AQ9H165 835 aa28.19■■■□□ 2.1
TMEM260-203ENST00000539559 SUPT6HQ7KZ85 1726 aaKnown RBP28.19■■■□□ 2.1
TMEM260-203ENST00000539559 MYOM3Q5VTT5 1437 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms