RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 SMARCA4P51532 1647 aa12.96□□□□□ -0.33
SNHG1-209ENST00000538654 BAZ1BQ9UIG0 1483 aaKnown RBP12.96□□□□□ -0.33
SNHG1-209ENST00000538654 DHX57Q6P158 1386 aaKnown RBP12.93□□□□□ -0.34
SNHG1-209ENST00000538654 PPP6R1Q9UPN7 881 aa12.82□□□□□ -0.36
SNHG1-209ENST00000538654 CUX2O14529 1486 aa12.82□□□□□ -0.36
SNHG1-209ENST00000538654 NEFLP07196 543 aa12.81□□□□□ -0.36
SNHG1-209ENST00000538654 SYNJ1O43426 1573 aa12.79□□□□□ -0.36
SNHG1-209ENST00000538654 NPM3O75607 178 aaKnown RBP12.78□□□□□ -0.36
SNHG1-209ENST00000538654 RBM19Q9Y4C8 960 aaKnown RBP12.78□□□□□ -0.36
SNHG1-209ENST00000538654 RRBP1Q9P2E9 1410 aaKnown RBP12.78□□□□□ -0.36
SNHG1-209ENST00000538654 RAPGEF2Q9Y4G8 1499 aa12.77□□□□□ -0.36
SNHG1-209ENST00000538654 VSIG10Q8N0Z9 540 aa12.74□□□□□ -0.37
SNHG1-209ENST00000538654 ERICH3Q5RHP9 1530 aa12.73□□□□□ -0.37
SNHG1-209ENST00000538654 PEG3Q9GZU2 1588 aa12.71□□□□□ -0.37
SNHG1-209ENST00000538654 MYT1LQ9UL68 1186 aa12.7□□□□□ -0.38
SNHG1-209ENST00000538654 CCER2I3L3R5 266 aa12.69□□□□□ -0.38
SNHG1-209ENST00000538654 KCNH8Q96L42 1107 aa12.69□□□□□ -0.38
SNHG1-209ENST00000538654 ARAP1Q96P48 1450 aa12.69□□□□□ -0.38
SNHG1-209ENST00000538654 CHMP4AQ9BY43 222 aa12.69□□□□□ -0.38
SNHG1-209ENST00000538654 CCNB3Q8WWL7 1395 aa12.68□□□□□ -0.38
SNHG1-209ENST00000538654 FANCIQ9NVI1 1328 aa12.68□□□□□ -0.38
SNHG1-209ENST00000538654 UNC13AQ9UPW8 1703 aa12.67□□□□□ -0.38
SNHG1-209ENST00000538654 DHX37Q8IY37 1157 aaKnown RBP12.66□□□□□ -0.38
SNHG1-209ENST00000538654 FBXO3Q9UK99 471 aa12.66□□□□□ -0.38
SNHG1-209ENST00000538654 TOP2BQ02880 1626 aa12.65□□□□□ -0.38
SNHG1-209ENST00000538654 MAPKBP1O60336 1514 aa12.64□□□□□ -0.39
SNHG1-209ENST00000538654 KANK4Q5T7N3 995 aaPredicted RBP12.64□□□□□ -0.39
SNHG1-209ENST00000538654 PRXQ9BXM0 1461 aa12.63□□□□□ -0.39
SNHG1-209ENST00000538654 PDIA4P13667 645 aaKnown RBP12.62□□□□□ -0.39
SNHG1-209ENST00000538654 DDX10Q13206 875 aaKnown RBP12.62□□□□□ -0.39
SNHG1-209ENST00000538654 PPP1R15AO75807 674 aaPredicted RBP12.61□□□□□ -0.39
SNHG1-209ENST00000538654 ANP32CO43423 234 aa12.61□□□□□ -0.39
SNHG1-209ENST00000538654 CFAP44Q96MT7 982 aa12.61□□□□□ -0.39
SNHG1-209ENST00000538654 RAB3GAP2Q9H2M9 1393 aa12.61□□□□□ -0.39
SNHG1-209ENST00000538654 BIVM-ERCC5R4GMW8 1640 aa12.6□□□□□ -0.39
SNHG1-209ENST00000538654 MSH5O43196 834 aa12.59□□□□□ -0.39
SNHG1-209ENST00000538654 IGSF3O75054 1194 aa12.59□□□□□ -0.39
SNHG1-209ENST00000538654 CDK11AQ9UQ88 783 aaPredicted RBP12.59□□□□□ -0.39
SNHG1-209ENST00000538654 WDR97A6NE52 1622 aa12.59□□□□□ -0.39
SNHG1-209ENST00000538654 SETD5Q9C0A6 1442 aa12.57□□□□□ -0.4
SNHG1-209ENST00000538654 ITGAEP38570 1179 aa12.56□□□□□ -0.4
SNHG1-209ENST00000538654 ERICH6BQ5W0A0 696 aa12.56□□□□□ -0.4
SNHG1-209ENST00000538654 MAP3K1Q13233 1512 aa12.56□□□□□ -0.4
SNHG1-209ENST00000538654 TRIM52Q96A61 297 aa12.54□□□□□ -0.4
SNHG1-209ENST00000538654 TRHP20396 242 aaPredicted RBP12.53□□□□□ -0.4
SNHG1-209ENST00000538654 SAMD1Q6SPF0 538 aaPredicted RBP12.53□□□□□ -0.4
SNHG1-209ENST00000538654 ARID3AQ99856 593 aa12.5□□□□□ -0.41
SNHG1-209ENST00000538654 ARHGAP35Q9NRY4 1499 aa12.49□□□□□ -0.41
SNHG1-209ENST00000538654 TIAM1Q13009 1591 aa12.49□□□□□ -0.41
SNHG1-209ENST00000538654 KIF27Q86VH2 1401 aa12.48□□□□□ -0.41
SNHG1-209ENST00000538654 ATAD2BQ9ULI0 1458 aa12.48□□□□□ -0.41
SNHG1-209ENST00000538654 SIN3AQ96ST3 1273 aa12.45□□□□□ -0.42
SNHG1-209ENST00000538654 PPP4R2Q9NY27 417 aa12.45□□□□□ -0.42
SNHG1-209ENST00000538654 BICRAQ9NZM4 1560 aa12.44□□□□□ -0.42
SNHG1-209ENST00000538654 DEKP35659 375 aaKnown RBP12.43□□□□□ -0.42
SNHG1-209ENST00000538654 LRRC9Q6ZRR7 1453 aa12.43□□□□□ -0.42
SNHG1-209ENST00000538654 HNRNPUQ00839 825 aaKnown RBP eCLIP12.41□□□□□ -0.42
SNHG1-209ENST00000538654 CFAP43Q8NDM7 1665 aa12.4□□□□□ -0.42
SNHG1-209ENST00000538654 TONSLQ96HA7 1378 aa12.4□□□□□ -0.42
SNHG1-209ENST00000538654 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.4□□□□□ -0.427e-33■□□□□ 8.4
SNHG1-209ENST00000538654 PAXIP1Q6ZW49 1069 aaPredicted RBP12.38□□□□□ -0.43
SNHG1-209ENST00000538654 UBE2Q2Q8WVN8 375 aa12.38□□□□□ -0.43
SNHG1-209ENST00000538654 PHLDB1Q86UU1 1377 aa12.38□□□□□ -0.43
SNHG1-209ENST00000538654 FHAD1B1AJZ9 1412 aa12.37□□□□□ -0.43
SNHG1-209ENST00000538654 FAM50AQ14320 339 aaKnown RBP12.37□□□□□ -0.43
SNHG1-209ENST00000538654 CUX1P39880 1505 aa12.37□□□□□ -0.43
SNHG1-209ENST00000538654 HIRIP3Q9BW71 556 aaPredicted RBP12.36□□□□□ -0.43
SNHG1-209ENST00000538654 NOP58Q9Y2X3 529 aaKnown RBP12.36□□□□□ -0.43
SNHG1-209ENST00000538654 CDK11BP21127 795 aaKnown RBP12.35□□□□□ -0.43
SNHG1-209ENST00000538654 IRX6P78412 446 aaPredicted RBP12.34□□□□□ -0.43
SNHG1-209ENST00000538654 PDE4CQ08493 712 aa12.33□□□□□ -0.44
SNHG1-209ENST00000538654 PABPN1Q86U42 306 aaKnown RBP eCLIP12.31□□□□□ -0.44
SNHG1-209ENST00000538654 UACAQ9BZF9 1416 aa12.3□□□□□ -0.44
SNHG1-209ENST00000538654 CCDC18Q5T9S5 1454 aa12.28□□□□□ -0.44
SNHG1-209ENST00000538654 PCF11O94913 1555 aaKnown RBP12.28□□□□□ -0.44
SNHG1-209ENST00000538654 ZBED9Q6R2W3 1325 aa12.27□□□□□ -0.44
SNHG1-209ENST00000538654 NCOA2Q15596 1464 aa12.27□□□□□ -0.44
SNHG1-209ENST00000538654 RTL5Q5HYW3 569 aaPredicted RBP12.27□□□□□ -0.44
SNHG1-209ENST00000538654 FYCO1Q9BQS8 1478 aa12.26□□□□□ -0.45
SNHG1-209ENST00000538654 NBR1Q14596 966 aa12.26□□□□□ -0.45
SNHG1-209ENST00000538654 ANP32AP39687 249 aaKnown RBP12.26□□□□□ -0.45
SNHG1-209ENST00000538654 HFM1A2PYH4 1435 aa12.25□□□□□ -0.45
SNHG1-209ENST00000538654 CNTLNQ9NXG0 1405 aa12.25□□□□□ -0.45
SNHG1-209ENST00000538654 B4GALNT3Q6L9W6 998 aa12.25□□□□□ -0.45
SNHG1-209ENST00000538654 ZNF428Q96B54 188 aa12.25□□□□□ -0.45
SNHG1-209ENST00000538654 IGF1RP08069 1367 aa12.24□□□□□ -0.45
SNHG1-209ENST00000538654 AQRO60306 1485 aaKnown RBP eCLIP12.24□□□□□ -0.452e-14■■■■■ 45.6
SNHG1-209ENST00000538654 NECTIN2Q92692 538 aa12.24□□□□□ -0.45
SNHG1-209ENST00000538654 PTPN23Q9H3S7 1636 aa12.24□□□□□ -0.45
SNHG1-209ENST00000538654 HMGXB3Q12766 1538 aa12.24□□□□□ -0.45
SNHG1-209ENST00000538654 IPO9Q96P70 1041 aaKnown RBP12.24□□□□□ -0.45
SNHG1-209ENST00000538654 SENP3Q9H4L4 574 aaPredicted RBP12.24□□□□□ -0.45
SNHG1-209ENST00000538654 CNKSR2Q8WXI2 1034 aa12.23□□□□□ -0.45
SNHG1-209ENST00000538654 KDM5BQ9UGL1 1544 aa12.23□□□□□ -0.45
SNHG1-209ENST00000538654 WASHC2AQ641Q2 1341 aa12.22□□□□□ -0.45
SNHG1-209ENST00000538654 PRDM2Q13029 1718 aa12.22□□□□□ -0.45
SNHG1-209ENST00000538654 FGD6Q6ZV73 1430 aa12.22□□□□□ -0.45
SNHG1-209ENST00000538654 CARMIL1Q5VZK9 1371 aa12.22□□□□□ -0.45
SNHG1-209ENST00000538654 NPM1P06748 294 aaKnown RBP eCLIP12.22□□□□□ -0.45
SNHG1-209ENST00000538654 EFCAB5A4FU69 1503 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms