RNA–Protein interactions for RNA: ENST00000538363.1

TNFRSF1A-211, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 554 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-211ENST00000538363 SYNJ2O15056 1496 aa17.12■□□□□ 0.33
TNFRSF1A-211ENST00000538363 GOLGA3Q08378 1498 aa17.12■□□□□ 0.33
TNFRSF1A-211ENST00000538363 CHMP7Q8WUX9 453 aaPredicted RBP17.11■□□□□ 0.33
TNFRSF1A-211ENST00000538363 RAPGEF2Q9Y4G8 1499 aa17.1■□□□□ 0.33
TNFRSF1A-211ENST00000538363 KIF21BO75037 1637 aa17.1■□□□□ 0.33
TNFRSF1A-211ENST00000538363 FHAD1B1AJZ9 1412 aa17.09■□□□□ 0.33
TNFRSF1A-211ENST00000538363 GRIN2AQ12879 1464 aa17.08■□□□□ 0.32
TNFRSF1A-211ENST00000538363 RANGAP1P46060 587 aaPredicted RBP17.07■□□□□ 0.32
TNFRSF1A-211ENST00000538363 PRXQ9BXM0 1461 aa17.06■□□□□ 0.32
TNFRSF1A-211ENST00000538363 CEP170Q5SW79 1584 aa17.06■□□□□ 0.32
TNFRSF1A-211ENST00000538363 CTTNBP2Q8WZ74 1663 aa17.03■□□□□ 0.32
TNFRSF1A-211ENST00000538363 TNIKQ9UKE5 1360 aa17■□□□□ 0.31
TNFRSF1A-211ENST00000538363 CLASP1Q7Z460 1538 aa16.98■□□□□ 0.31
TNFRSF1A-211ENST00000538363 NUP160Q12769 1436 aa16.95■□□□□ 0.3
TNFRSF1A-211ENST00000538363 OSCARQ8IYS5 282 aa16.93■□□□□ 0.3
TNFRSF1A-211ENST00000538363 IQGAP2Q13576 1575 aa16.89■□□□□ 0.3
TNFRSF1A-211ENST00000538363 SHROOM2Q13796 1616 aa16.88■□□□□ 0.29
TNFRSF1A-211ENST00000538363 CEP162Q5TB80 1403 aa16.87■□□□□ 0.29
TNFRSF1A-211ENST00000538363 CLIP1P30622 1438 aa16.86■□□□□ 0.29
TNFRSF1A-211ENST00000538363 ERCC6L2Q5T890 1561 aa16.83■□□□□ 0.28
TNFRSF1A-211ENST00000538363 P3H3Q8IVL6 736 aa16.83■□□□□ 0.28
TNFRSF1A-211ENST00000538363 KIAA0586Q9BVV6 1533 aa16.83■□□□□ 0.28
TNFRSF1A-211ENST00000538363 RIMBP3CA6NJZ7 1639 aa16.8■□□□□ 0.28
TNFRSF1A-211ENST00000538363 RIMBP3BA6NNM3 1639 aa16.8■□□□□ 0.28
TNFRSF1A-211ENST00000538363 RIMBP3Q9UFD9 1639 aa16.8■□□□□ 0.28
TNFRSF1A-211ENST00000538363 TTBK1Q5TCY1 1321 aaPredicted RBP16.78■□□□□ 0.28
TNFRSF1A-211ENST00000538363 ARHGEF11O15085 1522 aa16.78■□□□□ 0.28
TNFRSF1A-211ENST00000538363 JPH4Q96JJ6 628 aa16.77■□□□□ 0.28
TNFRSF1A-211ENST00000538363 KIAA0556O60303 1618 aa16.77■□□□□ 0.27
TNFRSF1A-211ENST00000538363 APLP2Q06481 763 aa16.75■□□□□ 0.27
TNFRSF1A-211ENST00000538363 ATP1B4Q9UN42 357 aaPredicted RBP16.75■□□□□ 0.27
TNFRSF1A-211ENST00000538363 UGGT2Q9NYU1 1516 aa16.75■□□□□ 0.27
TNFRSF1A-211ENST00000538363 SAMD9Q5K651 1589 aa16.73■□□□□ 0.27
TNFRSF1A-211ENST00000538363 PRG4Q92954 1404 aaPredicted RBP16.73■□□□□ 0.27
TNFRSF1A-211ENST00000538363 CARMIL2Q6F5E8 1435 aa16.72■□□□□ 0.27
TNFRSF1A-211ENST00000538363 EFCAB5A4FU69 1503 aa16.7■□□□□ 0.26
TNFRSF1A-211ENST00000538363 DISP1Q96F81 1524 aa16.7■□□□□ 0.26
TNFRSF1A-211ENST00000538363 ARHGAP35Q9NRY4 1499 aa16.68■□□□□ 0.26
TNFRSF1A-211ENST00000538363 ARAP1Q96P48 1450 aa16.67■□□□□ 0.26
TNFRSF1A-211ENST00000538363 FHOD3Q2V2M9 1422 aa16.66■□□□□ 0.26
TNFRSF1A-211ENST00000538363 FMN1Q68DA7 1419 aa16.62■□□□□ 0.25
TNFRSF1A-211ENST00000538363 VPS8Q8N3P4 1428 aa16.62■□□□□ 0.25
TNFRSF1A-211ENST00000538363 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.57■□□□□ 0.24
TNFRSF1A-211ENST00000538363 HNRNPUL2Q1KMD3 747 aaKnown RBP16.57■□□□□ 0.24
TNFRSF1A-211ENST00000538363 PPP4R3CPQ6ZMV5 832 aa16.57■□□□□ 0.24
TNFRSF1A-211ENST00000538363 PTPRGP23470 1445 aa16.56■□□□□ 0.24
TNFRSF1A-211ENST00000538363 PPARGC1BQ86YN6 1023 aaKnown RBP16.55■□□□□ 0.24
TNFRSF1A-211ENST00000538363 ADCY10Q96PN6 1610 aa16.55■□□□□ 0.24
TNFRSF1A-211ENST00000538363 PCF11O94913 1555 aaKnown RBP16.55■□□□□ 0.24
TNFRSF1A-211ENST00000538363 SCAF1Q9H7N4 1312 aaKnown RBP16.54■□□□□ 0.24
TNFRSF1A-211ENST00000538363 RAPGEF6Q8TEU7 1601 aa16.52■□□□□ 0.24
TNFRSF1A-211ENST00000538363 PLB1Q6P1J6 1458 aa16.51■□□□□ 0.23
TNFRSF1A-211ENST00000538363 ARID3CA6NKF2 412 aa16.51■□□□□ 0.23
TNFRSF1A-211ENST00000538363 ABCA8O94911 1581 aa16.51■□□□□ 0.23
TNFRSF1A-211ENST00000538363 LRRIQ1Q96JM4 1722 aa16.5■□□□□ 0.23
TNFRSF1A-211ENST00000538363 ABCC2Q92887 1545 aa16.49■□□□□ 0.23
TNFRSF1A-211ENST00000538363 CASKIN1Q8WXD9 1431 aa16.48■□□□□ 0.23
TNFRSF1A-211ENST00000538363 MAPK8IP2Q13387 824 aaPredicted RBP16.48■□□□□ 0.23
TNFRSF1A-211ENST00000538363 CYB5RLQ6IPT4 315 aa16.48■□□□□ 0.23
TNFRSF1A-211ENST00000538363 FYCO1Q9BQS8 1478 aa16.47■□□□□ 0.23
TNFRSF1A-211ENST00000538363 HECW1Q76N89 1606 aa16.46■□□□□ 0.23
TNFRSF1A-211ENST00000538363 ZCCHC11Q5TAX3 1644 aaKnown RBP16.45■□□□□ 0.22
TNFRSF1A-211ENST00000538363 CDK11AQ9UQ88 783 aaPredicted RBP16.45■□□□□ 0.22
TNFRSF1A-211ENST00000538363 NPM1P06748 294 aaKnown RBP eCLIP16.44■□□□□ 0.22
TNFRSF1A-211ENST00000538363 UACAQ9BZF9 1416 aa16.44■□□□□ 0.22
TNFRSF1A-211ENST00000538363 NUP153P49790 1475 aaKnown RBP16.41■□□□□ 0.22
TNFRSF1A-211ENST00000538363 CDK13Q14004 1512 aaKnown RBP16.4■□□□□ 0.22
TNFRSF1A-211ENST00000538363 UHRF1BP1LA0JNW5 1464 aa16.4■□□□□ 0.22
TNFRSF1A-211ENST00000538363 CCDC18Q5T9S5 1454 aa16.4■□□□□ 0.22
TNFRSF1A-211ENST00000538363 MTUS2Q5JR59 1369 aa16.38■□□□□ 0.21
TNFRSF1A-211ENST00000538363 POTEDQ86YR6 584 aa16.38■□□□□ 0.21
TNFRSF1A-211ENST00000538363 CFAP43Q8NDM7 1665 aa16.37■□□□□ 0.21
TNFRSF1A-211ENST00000538363 PLEKHD1A6NEE1 506 aa16.37■□□□□ 0.21
TNFRSF1A-211ENST00000538363 EPRSP07814 1512 aaKnown RBP16.35■□□□□ 0.21
TNFRSF1A-211ENST00000538363 TIAM1Q13009 1591 aa16.35■□□□□ 0.21
TNFRSF1A-211ENST00000538363 KDM5BQ9UGL1 1544 aa16.35■□□□□ 0.21
TNFRSF1A-211ENST00000538363 KANK4Q5T7N3 995 aaPredicted RBP16.34■□□□□ 0.21
TNFRSF1A-211ENST00000538363 MAP3K1Q13233 1512 aa16.34■□□□□ 0.21
TNFRSF1A-211ENST00000538363 ATP10BO94823 1461 aa16.3■□□□□ 0.2
TNFRSF1A-211ENST00000538363 MAPKBP1O60336 1514 aa16.29■□□□□ 0.2
TNFRSF1A-211ENST00000538363 LRRC9Q6ZRR7 1453 aa16.29■□□□□ 0.2
TNFRSF1A-211ENST00000538363 TRIM26Q12899 539 aaPredicted RBP16.28■□□□□ 0.2
TNFRSF1A-211ENST00000538363 KIF13AQ9H1H9 1805 aa16.28■□□□□ 0.2
TNFRSF1A-211ENST00000538363 TRHP20396 242 aaPredicted RBP16.27■□□□□ 0.2
TNFRSF1A-211ENST00000538363 KCNH8Q96L42 1107 aa16.27■□□□□ 0.2
TNFRSF1A-211ENST00000538363 DMRT2Q9Y5R5 561 aa16.27■□□□□ 0.2
TNFRSF1A-211ENST00000538363 MAGI3Q5TCQ9 1506 aa16.27■□□□□ 0.2
TNFRSF1A-211ENST00000538363 ASXL2Q76L83 1435 aa16.26■□□□□ 0.19
TNFRSF1A-211ENST00000538363 DIP2BQ9P265 1576 aa16.26■□□□□ 0.19
TNFRSF1A-211ENST00000538363 EHBP1L1Q8N3D4 1523 aa16.24■□□□□ 0.19
TNFRSF1A-211ENST00000538363 WDR7Q9Y4E6 1490 aa16.24■□□□□ 0.19
TNFRSF1A-211ENST00000538363 KIF14Q15058 1648 aa16.24■□□□□ 0.19
TNFRSF1A-211ENST00000538363 SUPT6HQ7KZ85 1726 aaKnown RBP16.22■□□□□ 0.19
TNFRSF1A-211ENST00000538363 TROQ12816 1431 aaPredicted RBP16.21■□□□□ 0.19
TNFRSF1A-211ENST00000538363 PCGF6Q9BYE7 350 aa16.2■□□□□ 0.18
TNFRSF1A-211ENST00000538363 TTC37Q6PGP7 1564 aa16.2■□□□□ 0.18
TNFRSF1A-211ENST00000538363 TSPOAP1O95153 1857 aa16.19■□□□□ 0.18
TNFRSF1A-211ENST00000538363 CCNB3Q8WWL7 1395 aa16.19■□□□□ 0.18
TNFRSF1A-211ENST00000538363 FAM50AQ14320 339 aaKnown RBP16.18■□□□□ 0.18
TNFRSF1A-211ENST00000538363 NCOA2Q15596 1464 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms