RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 ABCA10Q8WWZ4 1543 aa16.63■□□□□ 0.25
CLIP1-210ENST00000538120 VPS8Q8N3P4 1428 aa16.63■□□□□ 0.25
CLIP1-210ENST00000538120 RANGAP1P46060 587 aaPredicted RBP16.61■□□□□ 0.25
CLIP1-210ENST00000538120 SLC4A2P04920 1241 aa16.6■□□□□ 0.25
CLIP1-210ENST00000538120 CARMIL1Q5VZK9 1371 aa16.6■□□□□ 0.25
CLIP1-210ENST00000538120 ZBTB22O15209 634 aa16.6■□□□□ 0.25
CLIP1-210ENST00000538120 KIF21AQ7Z4S6 1674 aa16.58■□□□□ 0.25
CLIP1-210ENST00000538120 MYT1Q01538 1121 aa16.58■□□□□ 0.24
CLIP1-210ENST00000538120 ARAP1Q96P48 1450 aa16.57■□□□□ 0.24
CLIP1-210ENST00000538120 TTBK1Q5TCY1 1321 aaPredicted RBP16.56■□□□□ 0.24
CLIP1-210ENST00000538120 WDR97A6NE52 1622 aa16.52■□□□□ 0.24
CLIP1-210ENST00000538120 PELP1Q8IZL8 1130 aaKnown RBP16.5■□□□□ 0.23
CLIP1-210ENST00000538120 ARHGAP35Q9NRY4 1499 aa16.5■□□□□ 0.23
CLIP1-210ENST00000538120 TDRD9Q8NDG6 1382 aaKnown RBP16.47■□□□□ 0.23
CLIP1-210ENST00000538120 ABCA5Q8WWZ7 1642 aa16.46■□□□□ 0.23
CLIP1-210ENST00000538120 FOXD4L1Q9NU39 408 aa16.45■□□□□ 0.22
CLIP1-210ENST00000538120 MRC2Q9UBG0 1479 aa16.44■□□□□ 0.22
CLIP1-210ENST00000538120 TARBP1Q13395 1621 aaKnown RBP16.44■□□□□ 0.22
CLIP1-210ENST00000538120 CUL7Q14999 1698 aa16.43■□□□□ 0.22
CLIP1-210ENST00000538120 GAPVD1Q14C86 1478 aa16.42■□□□□ 0.22
CLIP1-210ENST00000538120 APLP2Q06481 763 aa16.42■□□□□ 0.22
CLIP1-210ENST00000538120 ZEB1P37275 1124 aaPredicted RBP16.41■□□□□ 0.22
CLIP1-210ENST00000538120 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.4■□□□□ 0.222e-7■■□□□ 13.3
CLIP1-210ENST00000538120 DAXXQ9UER7 740 aaPredicted RBP16.39■□□□□ 0.21
CLIP1-210ENST00000538120 KANK4Q5T7N3 995 aaPredicted RBP16.35■□□□□ 0.21
CLIP1-210ENST00000538120 WDR62O43379 1518 aa16.35■□□□□ 0.21
CLIP1-210ENST00000538120 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.33■□□□□ 0.2
CLIP1-210ENST00000538120 AQRO60306 1485 aaKnown RBP eCLIP16.31■□□□□ 0.27e-7■■■■■ 48.1
CLIP1-210ENST00000538120 CTTNBP2Q8WZ74 1663 aa16.3■□□□□ 0.2
CLIP1-210ENST00000538120 IFT140Q96RY7 1462 aa16.28■□□□□ 0.2
CLIP1-210ENST00000538120 P3H3Q8IVL6 736 aa16.28■□□□□ 0.2
CLIP1-210ENST00000538120 EFCAB5A4FU69 1503 aa16.27■□□□□ 0.19
CLIP1-210ENST00000538120 PBRM1Q86U86 1689 aa16.26■□□□□ 0.19
CLIP1-210ENST00000538120 FHOD3Q2V2M9 1422 aa16.26■□□□□ 0.19
CLIP1-210ENST00000538120 ZNF608Q9ULD9 1512 aaPredicted RBP16.26■□□□□ 0.19
CLIP1-210ENST00000538120 ERCC6Q03468 1493 aa16.26■□□□□ 0.19
CLIP1-210ENST00000538120 MAP3K1Q13233 1512 aa16.25■□□□□ 0.19
CLIP1-210ENST00000538120 CCER1Q8TC90 406 aaPredicted RBP16.25■□□□□ 0.19
CLIP1-210ENST00000538120 FHAD1B1AJZ9 1412 aa16.24■□□□□ 0.19
CLIP1-210ENST00000538120 GRIN2BQ13224 1484 aa16.24■□□□□ 0.19
CLIP1-210ENST00000538120 U3KPZ7 1027 aaPredicted RBP16.23■□□□□ 0.19
CLIP1-210ENST00000538120 THOC2Q8NI27 1593 aaKnown RBP16.23■□□□□ 0.19
CLIP1-210ENST00000538120 HNRNPUL2Q1KMD3 747 aaKnown RBP16.23■□□□□ 0.19
CLIP1-210ENST00000538120 TIAM1Q13009 1591 aa16.23■□□□□ 0.19
CLIP1-210ENST00000538120 ADAMTS12P58397 1594 aa16.22■□□□□ 0.19
CLIP1-210ENST00000538120 PCF11O94913 1555 aaKnown RBP16.21■□□□□ 0.19
CLIP1-210ENST00000538120 SAMD9Q5K651 1589 aa16.2■□□□□ 0.18
CLIP1-210ENST00000538120 RRBP1Q9P2E9 1410 aaKnown RBP16.19■□□□□ 0.18
CLIP1-210ENST00000538120 CASKIN1Q8WXD9 1431 aa16.17■□□□□ 0.18
CLIP1-210ENST00000538120 MYCNP04198 464 aaPredicted RBP16.17■□□□□ 0.18
CLIP1-210ENST00000538120 LRRC9Q6ZRR7 1453 aa16.17■□□□□ 0.18
CLIP1-210ENST00000538120 FYCO1Q9BQS8 1478 aa16.16■□□□□ 0.18
CLIP1-210ENST00000538120 RNF39Q9H2S5 420 aa16.14■□□□□ 0.18
CLIP1-210ENST00000538120 FMN1Q68DA7 1419 aa16.14■□□□□ 0.17
CLIP1-210ENST00000538120 CFAP43Q8NDM7 1665 aa16.14■□□□□ 0.17
CLIP1-210ENST00000538120 EIF4G3O43432 1585 aaKnown RBP16.14■□□□□ 0.17
CLIP1-210ENST00000538120 SNAPC4Q5SXM2 1469 aa16.14■□□□□ 0.17
CLIP1-210ENST00000538120 RTN4Q9NQC3 1192 aaKnown RBP16.11■□□□□ 0.17
CLIP1-210ENST00000538120 CCNB3Q8WWL7 1395 aa16.11■□□□□ 0.17
CLIP1-210ENST00000538120 ATP1B4Q9UN42 357 aaPredicted RBP16.1■□□□□ 0.17
CLIP1-210ENST00000538120 IQGAP2Q13576 1575 aa16.09■□□□□ 0.17
CLIP1-210ENST00000538120 PHLDB1Q86UU1 1377 aa16.08■□□□□ 0.17
CLIP1-210ENST00000538120 GRIN2AQ12879 1464 aa16.05■□□□□ 0.16
CLIP1-210ENST00000538120 MAGI1Q96QZ7 1491 aaPredicted RBP16.04■□□□□ 0.16
CLIP1-210ENST00000538120 UGGT2Q9NYU1 1516 aa16.04■□□□□ 0.16
CLIP1-210ENST00000538120 KIAA0586Q9BVV6 1533 aa16.04■□□□□ 0.16
CLIP1-210ENST00000538120 LRRIQ1Q96JM4 1722 aa16.02■□□□□ 0.16
CLIP1-210ENST00000538120 SYNJ2O15056 1496 aa16■□□□□ 0.15
CLIP1-210ENST00000538120 DISP1Q96F81 1524 aa15.98■□□□□ 0.15
CLIP1-210ENST00000538120 CHMP7Q8WUX9 453 aaPredicted RBP15.97■□□□□ 0.15
CLIP1-210ENST00000538120 CEP170Q5SW79 1584 aa15.96■□□□□ 0.15
CLIP1-210ENST00000538120 ITGAEP38570 1179 aa15.95■□□□□ 0.14
CLIP1-210ENST00000538120 NEUROD1Q13562 356 aa15.95■□□□□ 0.14
CLIP1-210ENST00000538120 MTUS2Q5JR59 1369 aa15.95■□□□□ 0.14
CLIP1-210ENST00000538120 DHX57Q6P158 1386 aaKnown RBP15.95■□□□□ 0.14
CLIP1-210ENST00000538120 KIAA0556O60303 1618 aa15.95■□□□□ 0.14
CLIP1-210ENST00000538120 ACIN1Q9UKV3 1341 aaKnown RBP15.94■□□□□ 0.14
CLIP1-210ENST00000538120 NUP160Q12769 1436 aa15.93■□□□□ 0.14
CLIP1-210ENST00000538120 MAGI3Q5TCQ9 1506 aa15.93■□□□□ 0.14
CLIP1-210ENST00000538120 CCDC18Q5T9S5 1454 aa15.92■□□□□ 0.14
CLIP1-210ENST00000538120 HECW1Q76N89 1606 aa15.92■□□□□ 0.14
CLIP1-210ENST00000538120 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.92■□□□□ 0.14
CLIP1-210ENST00000538120 FAM50AQ14320 339 aaKnown RBP15.92■□□□□ 0.14
CLIP1-210ENST00000538120 FBLN2P98095 1184 aa15.91■□□□□ 0.14
CLIP1-210ENST00000538120 EPRSP07814 1512 aaKnown RBP15.91■□□□□ 0.14
CLIP1-210ENST00000538120 SAMD1Q6SPF0 538 aaPredicted RBP15.9■□□□□ 0.14
CLIP1-210ENST00000538120 FGD6Q6ZV73 1430 aa15.9■□□□□ 0.14
CLIP1-210ENST00000538120 NCOA2Q15596 1464 aa15.9■□□□□ 0.14
CLIP1-210ENST00000538120 EHBP1L1Q8N3D4 1523 aa15.9■□□□□ 0.14
CLIP1-210ENST00000538120 C1QBPQ07021 282 aaKnown RBP15.9■□□□□ 0.14
CLIP1-210ENST00000538120 DIEXFQ68CQ4 756 aaKnown RBP15.89■□□□□ 0.13
CLIP1-210ENST00000538120 ARHGEF11O15085 1522 aa15.88■□□□□ 0.13
CLIP1-210ENST00000538120 CDK13Q14004 1512 aaKnown RBP15.88■□□□□ 0.13
CLIP1-210ENST00000538120 RAB3GAP2Q9H2M9 1393 aa15.87■□□□□ 0.13
CLIP1-210ENST00000538120 CLSPNQ9HAW4 1339 aa15.87■□□□□ 0.13
CLIP1-210ENST00000538120 SUPT6HQ7KZ85 1726 aaKnown RBP15.86■□□□□ 0.13
CLIP1-210ENST00000538120 MYOM3Q5VTT5 1437 aa15.86■□□□□ 0.13
CLIP1-210ENST00000538120 SETD5Q9C0A6 1442 aa15.86■□□□□ 0.13
CLIP1-210ENST00000538120 JPH4Q96JJ6 628 aa15.85■□□□□ 0.13
CLIP1-210ENST00000538120 PRKCSHP14314 528 aaPredicted RBP15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms