RNA–Protein interactions for RNA: ENST00000532997.5

BDNF-216, Transcript of brain derived neurotrophic factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BDNF, Length 3,930 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BDNF-216ENST00000532997 P3H3Q8IVL6 736 aa13.08□□□□□ -0.32
BDNF-216ENST00000532997 CUX2O14529 1486 aa13.07□□□□□ -0.32
BDNF-216ENST00000532997 CARMIL1Q5VZK9 1371 aa13.06□□□□□ -0.32
BDNF-216ENST00000532997 BIVM-ERCC5R4GMW8 1640 aa13.05□□□□□ -0.32
BDNF-216ENST00000532997 TRIM52Q96A61 297 aa13.05□□□□□ -0.32
BDNF-216ENST00000532997 SIN3AQ96ST3 1273 aa13.04□□□□□ -0.32
BDNF-216ENST00000532997 ARHGAP35Q9NRY4 1499 aa13.02□□□□□ -0.33
BDNF-216ENST00000532997 MTUS2Q5JR59 1369 aa13.02□□□□□ -0.33
BDNF-216ENST00000532997 HNRNPUQ00839 825 aaKnown RBP eCLIP13.01□□□□□ -0.33
BDNF-216ENST00000532997 NCAPD3P42695 1498 aa12.98□□□□□ -0.33
BDNF-216ENST00000532997 PPP1R15AO75807 674 aaPredicted RBP12.98□□□□□ -0.33
BDNF-216ENST00000532997 MYT1LQ9UL68 1186 aa12.97□□□□□ -0.33
BDNF-216ENST00000532997 HMGXB3Q12766 1538 aa12.97□□□□□ -0.33
BDNF-216ENST00000532997 MAP3K1Q13233 1512 aa12.97□□□□□ -0.33
BDNF-216ENST00000532997 HIRIP3Q9BW71 556 aaPredicted RBP12.96□□□□□ -0.33
BDNF-216ENST00000532997 CUX1P39880 1505 aa12.96□□□□□ -0.33
BDNF-216ENST00000532997 LRRC9Q6ZRR7 1453 aa12.96□□□□□ -0.34
BDNF-216ENST00000532997 TIAM1Q13009 1591 aa12.95□□□□□ -0.34
BDNF-216ENST00000532997 RBM19Q9Y4C8 960 aaKnown RBP12.93□□□□□ -0.34
BDNF-216ENST00000532997 IGF1RP08069 1367 aa12.93□□□□□ -0.34
BDNF-216ENST00000532997 CFTRP13569 1480 aa12.93□□□□□ -0.34
BDNF-216ENST00000532997 KCNH8Q96L42 1107 aa12.92□□□□□ -0.34
BDNF-216ENST00000532997 FMN1Q68DA7 1419 aa12.92□□□□□ -0.34
BDNF-216ENST00000532997 EIF4G2P78344 907 aaKnown RBP eCLIP12.92□□□□□ -0.34
BDNF-216ENST00000532997 ERICH6BQ5W0A0 696 aa12.91□□□□□ -0.34
BDNF-216ENST00000532997 PHLDB1Q86UU1 1377 aa12.89□□□□□ -0.35
BDNF-216ENST00000532997 CADPSQ9ULU8 1353 aa12.89□□□□□ -0.35
BDNF-216ENST00000532997 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.86□□□□□ -0.35
BDNF-216ENST00000532997 WDR97A6NE52 1622 aa12.86□□□□□ -0.35
BDNF-216ENST00000532997 PPP4R2Q9NY27 417 aa12.85□□□□□ -0.35
BDNF-216ENST00000532997 FHOD3Q2V2M9 1422 aa12.85□□□□□ -0.35
BDNF-216ENST00000532997 POLR3GLQ9BT43 218 aa12.85□□□□□ -0.35
BDNF-216ENST00000532997 FGD5Q6ZNL6 1462 aa12.85□□□□□ -0.35
BDNF-216ENST00000532997 FYCO1Q9BQS8 1478 aa12.84□□□□□ -0.35
BDNF-216ENST00000532997 CCDC18Q5T9S5 1454 aa12.84□□□□□ -0.35
BDNF-216ENST00000532997 RTL5Q5HYW3 569 aaPredicted RBP12.84□□□□□ -0.35
BDNF-216ENST00000532997 MRS2Q9HD23 443 aa12.84□□□□□ -0.35
BDNF-216ENST00000532997 MAPKBP1O60336 1514 aa12.83□□□□□ -0.36
BDNF-216ENST00000532997 EFCAB5A4FU69 1503 aa12.83□□□□□ -0.36
BDNF-216ENST00000532997 FAM9BQ8IZU0 186 aa12.83□□□□□ -0.36
BDNF-216ENST00000532997 CASKIN1Q8WXD9 1431 aa12.82□□□□□ -0.36
BDNF-216ENST00000532997 UACAQ9BZF9 1416 aa12.81□□□□□ -0.36
BDNF-216ENST00000532997 FGD6Q6ZV73 1430 aa12.81□□□□□ -0.36
BDNF-216ENST00000532997 IRX6P78412 446 aaPredicted RBP12.81□□□□□ -0.36
BDNF-216ENST00000532997 CHIC2Q9UKJ5 165 aa12.81□□□□□ -0.36
BDNF-216ENST00000532997 RRP7BPQ9NSQ0 103 aa12.8□□□□□ -0.36
BDNF-216ENST00000532997 ANP32AP39687 249 aaKnown RBP12.8□□□□□ -0.36
BDNF-216ENST00000532997 BCL11AQ9H165 835 aa12.8□□□□□ -0.36
BDNF-216ENST00000532997 HSPA5P11021 654 aaKnown RBP12.78□□□□□ -0.36
BDNF-216ENST00000532997 AQRO60306 1485 aaKnown RBP eCLIP12.76□□□□□ -0.37
BDNF-216ENST00000532997 PCF11O94913 1555 aaKnown RBP12.76□□□□□ -0.37
BDNF-216ENST00000532997 FANCIQ9NVI1 1328 aa12.76□□□□□ -0.37
BDNF-216ENST00000532997 FANCD2Q9BXW9 1451 aa12.74□□□□□ -0.37
BDNF-216ENST00000532997 CNGB1Q14028 1251 aaPredicted RBP12.74□□□□□ -0.37
BDNF-216ENST00000532997 HFM1A2PYH4 1435 aa12.74□□□□□ -0.37
BDNF-216ENST00000532997 CFAP43Q8NDM7 1665 aa12.73□□□□□ -0.37
BDNF-216ENST00000532997 MYOM3Q5VTT5 1437 aa12.73□□□□□ -0.37
BDNF-216ENST00000532997 CCDC136Q96JN2 1154 aa12.73□□□□□ -0.37
BDNF-216ENST00000532997 ZNF326Q5BKZ1 582 aaKnown RBP12.71□□□□□ -0.37
BDNF-216ENST00000532997 SLC4A1APQ9BWU0 796 aaKnown RBP12.7□□□□□ -0.38
BDNF-216ENST00000532997 MPHOSPH9Q99550 1183 aa12.68□□□□□ -0.38
BDNF-216ENST00000532997 NCOA2Q15596 1464 aa12.68□□□□□ -0.38
BDNF-216ENST00000532997 PRDM2Q13029 1718 aa12.68□□□□□ -0.38
BDNF-216ENST00000532997 TMC1Q8TDI8 760 aa12.68□□□□□ -0.38
BDNF-216ENST00000532997 DAXXQ9UER7 740 aaPredicted RBP12.68□□□□□ -0.38
BDNF-216ENST00000532997 CUL7Q14999 1698 aa12.67□□□□□ -0.38
BDNF-216ENST00000532997 CNTLNQ9NXG0 1405 aa12.67□□□□□ -0.38
BDNF-216ENST00000532997 ZBED9Q6R2W3 1325 aa12.67□□□□□ -0.38
BDNF-216ENST00000532997 EHBP1L1Q8N3D4 1523 aa12.66□□□□□ -0.38
BDNF-216ENST00000532997 CC2D2AQ9P2K1 1620 aa12.66□□□□□ -0.38
BDNF-216ENST00000532997 ZBTB47Q9UFB7 747 aaPredicted RBP12.66□□□□□ -0.38
BDNF-216ENST00000532997 B4GALNT3Q6L9W6 998 aa12.66□□□□□ -0.38
BDNF-216ENST00000532997 ARID3CA6NKF2 412 aa12.65□□□□□ -0.38
BDNF-216ENST00000532997 NOP58Q9Y2X3 529 aaKnown RBP12.65□□□□□ -0.38
BDNF-216ENST00000532997 DNMBPQ6XZF7 1577 aa12.65□□□□□ -0.38
BDNF-216ENST00000532997 SUPT6HQ7KZ85 1726 aaKnown RBP12.65□□□□□ -0.38
BDNF-216ENST00000532997 ABCA10Q8WWZ4 1543 aa12.65□□□□□ -0.38
BDNF-216ENST00000532997 RAD54L2Q9Y4B4 1467 aa12.65□□□□□ -0.38
BDNF-216ENST00000532997 PRKRIP1Q9H875 184 aaPredicted RBP12.65□□□□□ -0.39
BDNF-216ENST00000532997 L3MBTL2Q969R5 705 aa12.64□□□□□ -0.39
BDNF-216ENST00000532997 NAIPQ13075 1403 aa12.64□□□□□ -0.39
BDNF-216ENST00000532997 PTPN23Q9H3S7 1636 aa12.63□□□□□ -0.39
BDNF-216ENST00000532997 WASHC2AQ641Q2 1341 aa12.63□□□□□ -0.39
BDNF-216ENST00000532997 CCDC7Q96M83 1385 aa12.61□□□□□ -0.39
BDNF-216ENST00000532997 TDRD9Q8NDG6 1382 aaKnown RBP12.61□□□□□ -0.39
BDNF-216ENST00000532997 TOPBP1Q92547 1522 aa12.6□□□□□ -0.39
BDNF-216ENST00000532997 POLA1P09884 1462 aaPredicted RBP12.6□□□□□ -0.39
BDNF-216ENST00000532997 NBR1Q14596 966 aa12.59□□□□□ -0.39
BDNF-216ENST00000532997 ZNF777Q9ULD5 760 aaPredicted RBP12.59□□□□□ -0.39
BDNF-216ENST00000532997 PDS5BQ9NTI5 1447 aa12.59□□□□□ -0.39
BDNF-216ENST00000532997 NUDCQ9Y266 331 aa12.58□□□□□ -0.39
BDNF-216ENST00000532997 THOC2Q8NI27 1593 aaKnown RBP12.58□□□□□ -0.4
BDNF-216ENST00000532997 GAPVD1Q14C86 1478 aa12.58□□□□□ -0.4
BDNF-216ENST00000532997 CTTNBP2Q8WZ74 1663 aa12.58□□□□□ -0.4
BDNF-216ENST00000532997 MIA2Q96PC5 1412 aa12.56□□□□□ -0.4
BDNF-216ENST00000532997 ROCK2O75116 1388 aaKnown RBP12.56□□□□□ -0.4
BDNF-216ENST00000532997 DEKP35659 375 aaKnown RBP12.56□□□□□ -0.4
BDNF-216ENST00000532997 CFDP1Q9UEE9 299 aaPredicted RBP12.55□□□□□ -0.4
BDNF-216ENST00000532997 AKNAQ7Z591 1439 aa12.55□□□□□ -0.4
BDNF-216ENST00000532997 NPM2Q86SE8 214 aaKnown RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms