RNA–Protein interactions for RNA: ENST00000532997.5

BDNF-216, Transcript of brain derived neurotrophic factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BDNF, Length 3,930 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BDNF-216ENST00000532997 NISCHQ9Y2I1 1504 aa17.98■□□□□ 0.47
BDNF-216ENST00000532997 SHROOM4Q9ULL8 1493 aa15.8■□□□□ 0.12
BDNF-216ENST00000532997 SUPT5HO00267 1087 aaKnown RBP15.78■□□□□ 0.12
BDNF-216ENST00000532997 DCAF8L2P0C7V8 631 aa15.5■□□□□ 0.07
BDNF-216ENST00000532997 HRCP23327 699 aa15.25■□□□□ 0.03
BDNF-216ENST00000532997 ZCCHC6Q5VYS8 1495 aaKnown RBP15.19■□□□□ 0.02
BDNF-216ENST00000532997 CHIC1Q5VXU3 224 aa15.19■□□□□ 0.02
BDNF-216ENST00000532997 PCGF6Q9BYE7 350 aa15.19■□□□□ 0.02
BDNF-216ENST00000532997 CCDC180Q9P1Z9 1646 aa15.13■□□□□ 0.01
BDNF-216ENST00000532997 ZEB1P37275 1124 aaPredicted RBP14.93□□□□□ -0.02
BDNF-216ENST00000532997 TRIM26Q12899 539 aaPredicted RBP14.88□□□□□ -0.03
BDNF-216ENST00000532997 DCAF1Q9Y4B6 1507 aa14.85□□□□□ -0.03
BDNF-216ENST00000532997 MYO15BQ96JP2 1530 aa14.84□□□□□ -0.03
BDNF-216ENST00000532997 LOC105371045A0A1W2PR82 267 aa14.75□□□□□ -0.05
BDNF-216ENST00000532997 PPARGC1BQ86YN6 1023 aaKnown RBP14.74□□□□□ -0.05
BDNF-216ENST00000532997 TRIM41Q8WV44 630 aa14.73□□□□□ -0.05
BDNF-216ENST00000532997 PELP1Q8IZL8 1130 aaKnown RBP14.72□□□□□ -0.05
BDNF-216ENST00000532997 FAM9AQ8IZU1 332 aaPredicted RBP14.61□□□□□ -0.07
BDNF-216ENST00000532997 EHMT2Q96KQ7 1210 aa14.5□□□□□ -0.09
BDNF-216ENST00000532997 CCER1Q8TC90 406 aaPredicted RBP14.41□□□□□ -0.1
BDNF-216ENST00000532997 CENPBP07199 599 aaPredicted RBP14.39□□□□□ -0.11
BDNF-216ENST00000532997 ABCC9O60706 1549 aa14.38□□□□□ -0.11
BDNF-216ENST00000532997 SCRIBQ14160 1630 aa14.33□□□□□ -0.12
BDNF-216ENST00000532997 RSF1Q96T23 1441 aaPredicted RBP14.33□□□□□ -0.12
BDNF-216ENST00000532997 RB1CC1Q8TDY2 1594 aa14.26□□□□□ -0.13
BDNF-216ENST00000532997 MYT1Q01538 1121 aa14.23□□□□□ -0.13
BDNF-216ENST00000532997 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.16□□□□□ -0.14
BDNF-216ENST00000532997 APLP2Q06481 763 aa14.14□□□□□ -0.15
BDNF-216ENST00000532997 TTBK1Q5TCY1 1321 aaPredicted RBP14.13□□□□□ -0.15
BDNF-216ENST00000532997 DIEXFQ68CQ4 756 aaKnown RBP14.12□□□□□ -0.15
BDNF-216ENST00000532997 UBTFP17480 764 aaKnown RBP14.12□□□□□ -0.15
BDNF-216ENST00000532997 ACIN1Q9UKV3 1341 aaKnown RBP14.09□□□□□ -0.15
BDNF-216ENST00000532997 NACADO15069 1562 aa14.08□□□□□ -0.16
BDNF-216ENST00000532997 SCAF1Q9H7N4 1312 aaKnown RBP14.08□□□□□ -0.16
BDNF-216ENST00000532997 GTF3C3Q9Y5Q9 886 aa13.96□□□□□ -0.17
BDNF-216ENST00000532997 CECR2Q9BXF3 1484 aa13.94□□□□□ -0.18
BDNF-216ENST00000532997 ZNF316A6NFI3 1004 aaPredicted RBP13.94□□□□□ -0.18
BDNF-216ENST00000532997 MROH2BQ7Z745 1585 aa13.92□□□□□ -0.18
BDNF-216ENST00000532997 EEA1Q15075 1411 aa13.92□□□□□ -0.18
BDNF-216ENST00000532997 CSRNP3Q8WYN3 585 aa13.91□□□□□ -0.18
BDNF-216ENST00000532997 BAZ1AQ9NRL2 1556 aaPredicted RBP13.91□□□□□ -0.18
BDNF-216ENST00000532997 YTHDC1Q96MU7 727 aaKnown RBP13.91□□□□□ -0.18
BDNF-216ENST00000532997 NEUROD1Q13562 356 aa13.9□□□□□ -0.18
BDNF-216ENST00000532997 CEP162Q5TB80 1403 aa13.87□□□□□ -0.19
BDNF-216ENST00000532997 TNIKQ9UKE5 1360 aa13.85□□□□□ -0.19
BDNF-216ENST00000532997 HNRNPUL2Q1KMD3 747 aaKnown RBP13.85□□□□□ -0.19
BDNF-216ENST00000532997 WIZO95785 1651 aa13.84□□□□□ -0.19
BDNF-216ENST00000532997 WRNQ14191 1432 aaPredicted RBP eCLIP13.81□□□□□ -0.2
BDNF-216ENST00000532997 GOLGA3Q08378 1498 aa13.78□□□□□ -0.2
BDNF-216ENST00000532997 TOP2AP11388 1531 aaKnown RBP13.75□□□□□ -0.21
BDNF-216ENST00000532997 RANGAP1P46060 587 aaPredicted RBP13.75□□□□□ -0.21
BDNF-216ENST00000532997 CLSPNQ9HAW4 1339 aa13.71□□□□□ -0.21
BDNF-216ENST00000532997 CCDC88BA6NC98 1476 aa13.69□□□□□ -0.22
BDNF-216ENST00000532997 ABCC8Q09428 1581 aa13.69□□□□□ -0.22
BDNF-216ENST00000532997 CEP164Q9UPV0 1460 aa13.67□□□□□ -0.22
BDNF-216ENST00000532997 SOGA1O94964 1423 aa13.66□□□□□ -0.22
BDNF-216ENST00000532997 CLIP1P30622 1438 aa13.66□□□□□ -0.22
BDNF-216ENST00000532997 SMARCA4P51532 1647 aa13.62□□□□□ -0.23
BDNF-216ENST00000532997 MIER1Q8N108 512 aa13.6□□□□□ -0.23
BDNF-216ENST00000532997 SMARCA2P51531 1590 aa13.58□□□□□ -0.24
BDNF-216ENST00000532997 PABPN1Q86U42 306 aaKnown RBP eCLIP13.57□□□□□ -0.24
BDNF-216ENST00000532997 NEFLP07196 543 aa13.55□□□□□ -0.24
BDNF-216ENST00000532997 VPS8Q8N3P4 1428 aa13.55□□□□□ -0.24
BDNF-216ENST00000532997 EIF4G1Q04637 1599 aaKnown RBP13.5□□□□□ -0.25
BDNF-216ENST00000532997 BAZ1BQ9UIG0 1483 aaKnown RBP13.49□□□□□ -0.25
BDNF-216ENST00000532997 ITGAEP38570 1179 aa13.47□□□□□ -0.25
BDNF-216ENST00000532997 RUSC2Q8N2Y8 1516 aa13.46□□□□□ -0.26
BDNF-216ENST00000532997 KIF21BO75037 1637 aa13.44□□□□□ -0.26
BDNF-216ENST00000532997 ATP1B4Q9UN42 357 aaPredicted RBP13.38□□□□□ -0.27
BDNF-216ENST00000532997 RAPGEF2Q9Y4G8 1499 aa13.33□□□□□ -0.27
BDNF-216ENST00000532997 KIF27Q86VH2 1401 aa13.32□□□□□ -0.28
BDNF-216ENST00000532997 ERICH6Q7L0X2 663 aa13.32□□□□□ -0.28
BDNF-216ENST00000532997 FAM50AQ14320 339 aaKnown RBP13.31□□□□□ -0.28
BDNF-216ENST00000532997 ANP32CO43423 234 aa13.3□□□□□ -0.28
BDNF-216ENST00000532997 SUPT16HQ9Y5B9 1047 aaKnown RBP13.29□□□□□ -0.28
BDNF-216ENST00000532997 DHX57Q6P158 1386 aaKnown RBP13.29□□□□□ -0.28
BDNF-216ENST00000532997 CCNB3Q8WWL7 1395 aa13.29□□□□□ -0.28
BDNF-216ENST00000532997 SYNJ1O43426 1573 aa13.29□□□□□ -0.28
BDNF-216ENST00000532997 ATAD2BQ9ULI0 1458 aa13.28□□□□□ -0.28
BDNF-216ENST00000532997 ERICH3Q5RHP9 1530 aa13.24□□□□□ -0.29
BDNF-216ENST00000532997 BCANQ96GW7 911 aa13.23□□□□□ -0.29
BDNF-216ENST00000532997 PEG3Q9GZU2 1588 aa13.22□□□□□ -0.29
BDNF-216ENST00000532997 FKBP8Q14318 412 aa13.21□□□□□ -0.3
BDNF-216ENST00000532997 DDX10Q13206 875 aaKnown RBP13.2□□□□□ -0.3
BDNF-216ENST00000532997 KANK4Q5T7N3 995 aaPredicted RBP13.2□□□□□ -0.3
BDNF-216ENST00000532997 TIMELESSQ9UNS1 1208 aa13.2□□□□□ -0.3
BDNF-216ENST00000532997 UNC13AQ9UPW8 1703 aa13.18□□□□□ -0.3
BDNF-216ENST00000532997 TOP2BQ02880 1626 aa13.17□□□□□ -0.3
BDNF-216ENST00000532997 TONSLQ96HA7 1378 aa13.16□□□□□ -0.3
BDNF-216ENST00000532997 ANP32EQ9BTT0 268 aa13.16□□□□□ -0.3
BDNF-216ENST00000532997 RRBP1Q9P2E9 1410 aaKnown RBP13.15□□□□□ -0.3
BDNF-216ENST00000532997 SETD5Q9C0A6 1442 aa13.15□□□□□ -0.3
BDNF-216ENST00000532997 FHAD1B1AJZ9 1412 aa13.15□□□□□ -0.3
BDNF-216ENST00000532997 RAB3GAP2Q9H2M9 1393 aa13.13□□□□□ -0.31
BDNF-216ENST00000532997 PRXQ9BXM0 1461 aa13.13□□□□□ -0.31
BDNF-216ENST00000532997 CDK11AQ9UQ88 783 aaPredicted RBP13.11□□□□□ -0.31
BDNF-216ENST00000532997 ARAP1Q96P48 1450 aa13.11□□□□□ -0.31
BDNF-216ENST00000532997 CCER2I3L3R5 266 aa13.1□□□□□ -0.31
BDNF-216ENST00000532997 TSHZ2Q9NRE2 1034 aa13.09□□□□□ -0.31
BDNF-216ENST00000532997 BICRAQ9NZM4 1560 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms