RNA–Protein interactions for RNA: ENST00000530724.1

TRIM3-210, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 651 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-210ENST00000530724 FANCIQ9NVI1 1328 aa16.61■□□□□ 0.25
TRIM3-210ENST00000530724 LRRC9Q6ZRR7 1453 aa16.6■□□□□ 0.25
TRIM3-210ENST00000530724 CFTRP13569 1480 aa16.58■□□□□ 0.24
TRIM3-210ENST00000530724 CFAP43Q8NDM7 1665 aa16.57■□□□□ 0.24
TRIM3-210ENST00000530724 FHAD1B1AJZ9 1412 aa16.57■□□□□ 0.24
TRIM3-210ENST00000530724 RBM19Q9Y4C8 960 aaKnown RBP16.57■□□□□ 0.24
TRIM3-210ENST00000530724 WDR97A6NE52 1622 aa16.56■□□□□ 0.24
TRIM3-210ENST00000530724 AQRO60306 1485 aaKnown RBP eCLIP16.56■□□□□ 0.24
TRIM3-210ENST00000530724 NEFLP07196 543 aa16.55■□□□□ 0.24
TRIM3-210ENST00000530724 FKBP8Q14318 412 aa16.52■□□□□ 0.24
TRIM3-210ENST00000530724 IGF1RP08069 1367 aa16.49■□□□□ 0.23
TRIM3-210ENST00000530724 KCNH8Q96L42 1107 aa16.47■□□□□ 0.23
TRIM3-210ENST00000530724 PHLDB1Q86UU1 1377 aa16.46■□□□□ 0.23
TRIM3-210ENST00000530724 FYCO1Q9BQS8 1478 aa16.46■□□□□ 0.23
TRIM3-210ENST00000530724 EFCAB5A4FU69 1503 aa16.45■□□□□ 0.22
TRIM3-210ENST00000530724 ANP32CO43423 234 aa16.45■□□□□ 0.22
TRIM3-210ENST00000530724 PRDM2Q13029 1718 aa16.42■□□□□ 0.22
TRIM3-210ENST00000530724 DDX10Q13206 875 aaKnown RBP16.41■□□□□ 0.22
TRIM3-210ENST00000530724 CASKIN1Q8WXD9 1431 aa16.41■□□□□ 0.22
TRIM3-210ENST00000530724 HFM1A2PYH4 1435 aa16.4■□□□□ 0.22
TRIM3-210ENST00000530724 UACAQ9BZF9 1416 aa16.4■□□□□ 0.22
TRIM3-210ENST00000530724 FGD5Q6ZNL6 1462 aa16.4■□□□□ 0.22
TRIM3-210ENST00000530724 KDM5BQ9UGL1 1544 aa16.38■□□□□ 0.21
TRIM3-210ENST00000530724 NCOA2Q15596 1464 aa16.36■□□□□ 0.21
TRIM3-210ENST00000530724 PABPN1Q86U42 306 aaKnown RBP eCLIP16.36■□□□□ 0.21
TRIM3-210ENST00000530724 CARMIL1Q5VZK9 1371 aa16.36■□□□□ 0.21
TRIM3-210ENST00000530724 MSH5O43196 834 aa16.35■□□□□ 0.21
TRIM3-210ENST00000530724 PCF11O94913 1555 aaKnown RBP16.34■□□□□ 0.21
TRIM3-210ENST00000530724 AKNAQ7Z591 1439 aa16.34■□□□□ 0.21
TRIM3-210ENST00000530724 THOC2Q8NI27 1593 aaKnown RBP16.32■□□□□ 0.2
TRIM3-210ENST00000530724 FGD6Q6ZV73 1430 aa16.31■□□□□ 0.2
TRIM3-210ENST00000530724 CDK11AQ9UQ88 783 aaPredicted RBP16.31■□□□□ 0.2
TRIM3-210ENST00000530724 CCDC18Q5T9S5 1454 aa16.29■□□□□ 0.2
TRIM3-210ENST00000530724 BCANQ96GW7 911 aa16.29■□□□□ 0.2
TRIM3-210ENST00000530724 SIN3AQ96ST3 1273 aa16.29■□□□□ 0.2
TRIM3-210ENST00000530724 PPP4R2Q9NY27 417 aa16.28■□□□□ 0.2
TRIM3-210ENST00000530724 TONSLQ96HA7 1378 aa16.27■□□□□ 0.2
TRIM3-210ENST00000530724 PTPN23Q9H3S7 1636 aa16.27■□□□□ 0.2
TRIM3-210ENST00000530724 FMN1Q68DA7 1419 aa16.27■□□□□ 0.19
TRIM3-210ENST00000530724 CC2D2AQ9P2K1 1620 aa16.26■□□□□ 0.19
TRIM3-210ENST00000530724 SNAPC4Q5SXM2 1469 aa16.23■□□□□ 0.19
TRIM3-210ENST00000530724 NAIPQ13075 1403 aa16.23■□□□□ 0.19
TRIM3-210ENST00000530724 RANGAP1P46060 587 aaPredicted RBP16.23■□□□□ 0.19
TRIM3-210ENST00000530724 ARHGEF11O15085 1522 aa16.23■□□□□ 0.19
TRIM3-210ENST00000530724 CUL7Q14999 1698 aa16.21■□□□□ 0.19
TRIM3-210ENST00000530724 ABCA10Q8WWZ4 1543 aa16.21■□□□□ 0.19
TRIM3-210ENST00000530724 TCOF1Q13428 1488 aaKnown RBP16.21■□□□□ 0.19
TRIM3-210ENST00000530724 CNTLNQ9NXG0 1405 aa16.2■□□□□ 0.18
TRIM3-210ENST00000530724 TRIM52Q96A61 297 aa16.2■□□□□ 0.18
TRIM3-210ENST00000530724 CADPSQ9ULU8 1353 aa16.2■□□□□ 0.18
TRIM3-210ENST00000530724 ABCA5Q8WWZ7 1642 aa16.19■□□□□ 0.18
TRIM3-210ENST00000530724 HECW1Q76N89 1606 aa16.19■□□□□ 0.18
TRIM3-210ENST00000530724 ZBED9Q6R2W3 1325 aa16.19■□□□□ 0.18
TRIM3-210ENST00000530724 ITGAEP38570 1179 aa16.18■□□□□ 0.18
TRIM3-210ENST00000530724 MYOM3Q5VTT5 1437 aa16.18■□□□□ 0.18
TRIM3-210ENST00000530724 NCOA1Q15788 1441 aa16.17■□□□□ 0.18
TRIM3-210ENST00000530724 RNF123Q5XPI4 1314 aa16.17■□□□□ 0.18
TRIM3-210ENST00000530724 FAM50AQ14320 339 aaKnown RBP16.16■□□□□ 0.18
TRIM3-210ENST00000530724 PTPRKQ15262 1439 aa16.16■□□□□ 0.18
TRIM3-210ENST00000530724 SAMD9Q5K651 1589 aa16.16■□□□□ 0.18
TRIM3-210ENST00000530724 EHBP1L1Q8N3D4 1523 aa16.15■□□□□ 0.18
TRIM3-210ENST00000530724 GCC2Q8IWJ2 1684 aa16.14■□□□□ 0.17
TRIM3-210ENST00000530724 GRIN2BQ13224 1484 aa16.13■□□□□ 0.17
TRIM3-210ENST00000530724 HNRNPUQ00839 825 aaKnown RBP eCLIP16.12■□□□□ 0.17
TRIM3-210ENST00000530724 WASHC2AQ641Q2 1341 aa16.12■□□□□ 0.17
TRIM3-210ENST00000530724 KIF21AQ7Z4S6 1674 aa16.11■□□□□ 0.17
TRIM3-210ENST00000530724 UGGT2Q9NYU1 1516 aa16.11■□□□□ 0.17
TRIM3-210ENST00000530724 ERICH6Q7L0X2 663 aa16.11■□□□□ 0.17
TRIM3-210ENST00000530724 DNMBPQ6XZF7 1577 aa16.11■□□□□ 0.17
TRIM3-210ENST00000530724 CTTNBP2Q8WZ74 1663 aa16.11■□□□□ 0.17
TRIM3-210ENST00000530724 SMG6Q86US8 1419 aaKnown RBP16.11■□□□□ 0.17
TRIM3-210ENST00000530724 FHOD3Q2V2M9 1422 aa16.1■□□□□ 0.17
TRIM3-210ENST00000530724 DENND4BO75064 1496 aaPredicted RBP16.1■□□□□ 0.17
TRIM3-210ENST00000530724 SUPT6HQ7KZ85 1726 aaKnown RBP16.08■□□□□ 0.16
TRIM3-210ENST00000530724 CCDC7Q96M83 1385 aa16.07■□□□□ 0.16
TRIM3-210ENST00000530724 SPATA31E1Q6ZUB1 1445 aa16.07■□□□□ 0.16
TRIM3-210ENST00000530724 MIA2Q96PC5 1412 aa16.07■□□□□ 0.16
TRIM3-210ENST00000530724 EIF4G2P78344 907 aaKnown RBP eCLIP16.06■□□□□ 0.16
TRIM3-210ENST00000530724 POLR1AO95602 1720 aaPredicted RBP16.05■□□□□ 0.16
TRIM3-210ENST00000530724 HSPA5P11021 654 aaKnown RBP16.05■□□□□ 0.16
TRIM3-210ENST00000530724 PRKRIP1Q9H875 184 aaPredicted RBP16.05■□□□□ 0.16
TRIM3-210ENST00000530724 ARID4BQ4LE39 1312 aaPredicted RBP16.04■□□□□ 0.16
TRIM3-210ENST00000530724 ROCK1Q13464 1354 aa16.03■□□□□ 0.16
TRIM3-210ENST00000530724 MTUS2Q5JR59 1369 aa16.03■□□□□ 0.16
TRIM3-210ENST00000530724 NOP58Q9Y2X3 529 aaKnown RBP16.02■□□□□ 0.16
TRIM3-210ENST00000530724 RPRD2Q5VT52 1461 aaKnown RBP16.01■□□□□ 0.15
TRIM3-210ENST00000530724 TEX14Q8IWB6 1497 aa16■□□□□ 0.15
TRIM3-210ENST00000530724 DEKP35659 375 aaKnown RBP16■□□□□ 0.15
TRIM3-210ENST00000530724 POLA1P09884 1462 aaPredicted RBP15.97■□□□□ 0.15
TRIM3-210ENST00000530724 FANCD2Q9BXW9 1451 aa15.97■□□□□ 0.15
TRIM3-210ENST00000530724 TOPBP1Q92547 1522 aa15.96■□□□□ 0.15
TRIM3-210ENST00000530724 ANKRD30BQ9BXX2 1392 aa15.96■□□□□ 0.15
TRIM3-210ENST00000530724 HIRIP3Q9BW71 556 aaPredicted RBP15.95■□□□□ 0.14
TRIM3-210ENST00000530724 KTN1Q86UP2 1357 aaKnown RBP15.94■□□□□ 0.14
TRIM3-210ENST00000530724 MBD5Q9P267 1494 aa15.93■□□□□ 0.14
TRIM3-210ENST00000530724 IPO9Q96P70 1041 aaKnown RBP15.93■□□□□ 0.14
TRIM3-210ENST00000530724 LRRIQ1Q96JM4 1722 aa15.93■□□□□ 0.14
TRIM3-210ENST00000530724 INSRP06213 1382 aa15.92■□□□□ 0.14
TRIM3-210ENST00000530724 USP35Q9P2H5 1018 aa15.92■□□□□ 0.14
TRIM3-210ENST00000530724 DHX29Q7Z478 1369 aaKnown RBP15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms