RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 PHLDB1Q86UU1 1377 aa28.26■■■□□ 2.11
PCF11-203ENST00000530304 MAPKBP1O60336 1514 aa28.24■■■□□ 2.11
PCF11-203ENST00000530304 P3H3Q8IVL6 736 aa28.23■■■□□ 2.11
PCF11-203ENST00000530304 SETD5Q9C0A6 1442 aa28.22■■■□□ 2.11
PCF11-203ENST00000530304 PCF11O94913 1555 aaKnown RBP28.2■■■□□ 2.11
PCF11-203ENST00000530304 CFAP43Q8NDM7 1665 aa28.2■■■□□ 2.11
PCF11-203ENST00000530304 RAD54L2Q9Y4B4 1467 aa28.2■■■□□ 2.11
PCF11-203ENST00000530304 DNMBPQ6XZF7 1577 aa28.2■■■□□ 2.1
PCF11-203ENST00000530304 ABCA10Q8WWZ4 1543 aa28.17■■■□□ 2.1
PCF11-203ENST00000530304 FAM50AQ14320 339 aaKnown RBP28.16■■■□□ 2.1
PCF11-203ENST00000530304 ATP1B4Q9UN42 357 aaPredicted RBP28.15■■■□□ 2.1
PCF11-203ENST00000530304 POLA1P09884 1462 aaPredicted RBP28.15■■■□□ 2.1
PCF11-203ENST00000530304 TOPBP1Q92547 1522 aa28.14■■■□□ 2.1
PCF11-203ENST00000530304 FHOD3Q2V2M9 1422 aa28.14■■■□□ 2.09
PCF11-203ENST00000530304 EFCAB5A4FU69 1503 aa28.09■■■□□ 2.09
PCF11-203ENST00000530304 FYCO1Q9BQS8 1478 aa28.08■■■□□ 2.09
PCF11-203ENST00000530304 NESP48681 1621 aa28.07■■■□□ 2.08
PCF11-203ENST00000530304 CUL7Q14999 1698 aa28.06■■■□□ 2.08
PCF11-203ENST00000530304 CASKIN1Q8WXD9 1431 aa28.05■■■□□ 2.08
PCF11-203ENST00000530304 AQRO60306 1485 aaKnown RBP eCLIP28.03■■■□□ 2.085e-6■■■■■ 28
PCF11-203ENST00000530304 SIN3AQ96ST3 1273 aa28.02■■■□□ 2.08
PCF11-203ENST00000530304 CTTNBP2Q8WZ74 1663 aa28.01■■■□□ 2.08
PCF11-203ENST00000530304 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.97■■■□□ 2.071e-25■■□□□ 13.2
PCF11-203ENST00000530304 WDR97A6NE52 1622 aa27.97■■■□□ 2.07
PCF11-203ENST00000530304 FMN1Q68DA7 1419 aa27.94■■■□□ 2.06
PCF11-203ENST00000530304 TIMELESSQ9UNS1 1208 aa27.91■■■□□ 2.06
PCF11-203ENST00000530304 URB2Q14146 1524 aaKnown RBP27.89■■■□□ 2.06
PCF11-203ENST00000530304 SNAPC4Q5SXM2 1469 aa27.89■■■□□ 2.05
PCF11-203ENST00000530304 FGD6Q6ZV73 1430 aa27.87■■■□□ 2.05
PCF11-203ENST00000530304 SUPT16HQ9Y5B9 1047 aaKnown RBP27.86■■■□□ 2.05
PCF11-203ENST00000530304 LAMC3Q9Y6N6 1575 aa27.86■■■□□ 2.05
PCF11-203ENST00000530304 KCNH8Q96L42 1107 aa27.85■■■□□ 2.05
PCF11-203ENST00000530304 TDRD9Q8NDG6 1382 aaKnown RBP27.83■■■□□ 2.05
PCF11-203ENST00000530304 DDX10Q13206 875 aaKnown RBP27.82■■■□□ 2.04
PCF11-203ENST00000530304 MTUS2Q5JR59 1369 aa27.82■■■□□ 2.04
PCF11-203ENST00000530304 ABCA5Q8WWZ7 1642 aa27.81■■■□□ 2.04
PCF11-203ENST00000530304 PPP1R15AO75807 674 aaPredicted RBP27.8■■■□□ 2.04
PCF11-203ENST00000530304 SAMD9Q5K651 1589 aa27.8■■■□□ 2.04
PCF11-203ENST00000530304 GAPVD1Q14C86 1478 aa27.78■■■□□ 2.04
PCF11-203ENST00000530304 LRRIQ1Q96JM4 1722 aa27.75■■■□□ 2.03
PCF11-203ENST00000530304 PTPRKQ15262 1439 aa27.74■■■□□ 2.03
PCF11-203ENST00000530304 CCDC18Q5T9S5 1454 aa27.73■■■□□ 2.03
PCF11-203ENST00000530304 GRIN2BQ13224 1484 aa27.72■■■□□ 2.03
PCF11-203ENST00000530304 HFM1A2PYH4 1435 aa27.72■■■□□ 2.03
PCF11-203ENST00000530304 NCOA2Q15596 1464 aa27.7■■■□□ 2.03
PCF11-203ENST00000530304 HIRIP3Q9BW71 556 aaPredicted RBP27.7■■■□□ 2.02
PCF11-203ENST00000530304 PDS5BQ9NTI5 1447 aa27.69■■■□□ 2.02
PCF11-203ENST00000530304 MYOM3Q5VTT5 1437 aa27.67■■■□□ 2.02
PCF11-203ENST00000530304 UACAQ9BZF9 1416 aa27.67■■■□□ 2.02
PCF11-203ENST00000530304 PTPN23Q9H3S7 1636 aa27.67■■■□□ 2.02
PCF11-203ENST00000530304 THOC2Q8NI27 1593 aaKnown RBP27.66■■■□□ 2.02
PCF11-203ENST00000530304 TONSLQ96HA7 1378 aa27.65■■■□□ 2.02
PCF11-203ENST00000530304 SUPT6HQ7KZ85 1726 aaKnown RBP27.64■■■□□ 2.02
PCF11-203ENST00000530304 NAIPQ13075 1403 aa27.63■■■□□ 2.01
PCF11-203ENST00000530304 EHBP1L1Q8N3D4 1523 aa27.62■■■□□ 2.01
PCF11-203ENST00000530304 MYT1Q01538 1121 aa27.59■■■□□ 2.01
PCF11-203ENST00000530304 KIF21AQ7Z4S6 1674 aa27.57■■■□□ 2
PCF11-203ENST00000530304 DNAJC5BQ9UF47 199 aa27.57■■■□□ 2
PCF11-203ENST00000530304 UGGT2Q9NYU1 1516 aa27.56■■■□□ 2
PCF11-203ENST00000530304 TARBP1Q13395 1621 aaKnown RBP27.56■■■□□ 2
PCF11-203ENST00000530304 ARHGEF11O15085 1522 aa27.54■■■□□ 2
PCF11-203ENST00000530304 MAGI3Q5TCQ9 1506 aa27.54■■■□□ 2
PCF11-203ENST00000530304 CCER2I3L3R5 266 aa27.53■■■□□ 2
PCF11-203ENST00000530304 ANP32CO43423 234 aa27.53■■■□□ 2
PCF11-203ENST00000530304 TCOF1Q13428 1488 aaKnown RBP27.45■■□□□ 1.98
PCF11-203ENST00000530304 RRP7BPQ9NSQ0 103 aa27.45■■□□□ 1.98
PCF11-203ENST00000530304 HECW1Q76N89 1606 aa27.44■■□□□ 1.98
PCF11-203ENST00000530304 PBRM1Q86U86 1689 aa27.44■■□□□ 1.98
PCF11-203ENST00000530304 CHIC2Q9UKJ5 165 aa27.43■■□□□ 1.98
PCF11-203ENST00000530304 KDM5BQ9UGL1 1544 aa27.43■■□□□ 1.98
PCF11-203ENST00000530304 IQGAP2Q13576 1575 aa27.41■■□□□ 1.98
PCF11-203ENST00000530304 EPRSP07814 1512 aaKnown RBP27.4■■□□□ 1.98
PCF11-203ENST00000530304 TSHZ2Q9NRE2 1034 aa27.39■■□□□ 1.98
PCF11-203ENST00000530304 GCC2Q8IWJ2 1684 aa27.38■■□□□ 1.97
PCF11-203ENST00000530304 FKBP8Q14318 412 aa27.37■■□□□ 1.97
PCF11-203ENST00000530304 TRIM52Q96A61 297 aa27.37■■□□□ 1.97
PCF11-203ENST00000530304 ADAMTS12P58397 1594 aa27.35■■□□□ 1.97
PCF11-203ENST00000530304 DENND4BO75064 1496 aaPredicted RBP27.35■■□□□ 1.97
PCF11-203ENST00000530304 CDK13Q14004 1512 aaKnown RBP27.34■■□□□ 1.97
PCF11-203ENST00000530304 BCANQ96GW7 911 aa27.34■■□□□ 1.97
PCF11-203ENST00000530304 AKNAQ7Z591 1439 aa27.34■■□□□ 1.97
PCF11-203ENST00000530304 MIA2Q96PC5 1412 aa27.33■■□□□ 1.97
PCF11-203ENST00000530304 KDM6BO15054 1643 aa27.31■■□□□ 1.96
PCF11-203ENST00000530304 WDR62O43379 1518 aa27.31■■□□□ 1.96
PCF11-203ENST00000530304 ARID3CA6NKF2 412 aa27.29■■□□□ 1.96
PCF11-203ENST00000530304 MPHOSPH9Q99550 1183 aa27.26■■□□□ 1.95
PCF11-203ENST00000530304 HSPA5P11021 654 aaKnown RBP27.24■■□□□ 1.95
PCF11-203ENST00000530304 MRC2Q9UBG0 1479 aa27.24■■□□□ 1.95
PCF11-203ENST00000530304 NEFLP07196 543 aa27.23■■□□□ 1.95
PCF11-203ENST00000530304 WASHC2AQ641Q2 1341 aa27.22■■□□□ 1.95
PCF11-203ENST00000530304 EIF4G2P78344 907 aaKnown RBP eCLIP27.18■■□□□ 1.94
PCF11-203ENST00000530304 FOXD1Q16676 465 aa27.17■■□□□ 1.94
PCF11-203ENST00000530304 L3MBTL2Q969R5 705 aa27.16■■□□□ 1.94
PCF11-203ENST00000530304 ZNF608Q9ULD9 1512 aaPredicted RBP27.15■■□□□ 1.94
PCF11-203ENST00000530304 DAPK1P53355 1430 aa27.14■■□□□ 1.94
PCF11-203ENST00000530304 ROCK1Q13464 1354 aa27.13■■□□□ 1.93
PCF11-203ENST00000530304 DISP1Q96F81 1524 aa27.12■■□□□ 1.93
PCF11-203ENST00000530304 KIAA0586Q9BVV6 1533 aa27.12■■□□□ 1.93
PCF11-203ENST00000530304 KIAA0556O60303 1618 aa27.12■■□□□ 1.93
PCF11-203ENST00000530304 IFT140Q96RY7 1462 aa27.11■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms