RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, human

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSTF3-208	ENST00000528865	AQR	O60306	1485 aa	Known RBP eCLIP	12.22	□□□□□ -0.45
CSTF3-208	ENST00000528865	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	12.22	□□□□□ -0.45
CSTF3-208	ENST00000528865	TOPBP1	Q92547	1522 aa		12.21	□□□□□ -0.46
CSTF3-208	ENST00000528865	SETD5	Q9C0A6	1442 aa		12.2	□□□□□ -0.46
CSTF3-208	ENST00000528865	RAB3GAP2	Q9H2M9	1393 aa		12.2	□□□□□ -0.46
CSTF3-208	ENST00000528865	EFCAB5	A4FU69	1503 aa		12.2	□□□□□ -0.46
CSTF3-208	ENST00000528865	PHLDB1	Q86UU1	1377 aa		12.19	□□□□□ -0.46
CSTF3-208	ENST00000528865	POLA1	P09884	1462 aa	Predicted RBP	12.19	□□□□□ -0.46
CSTF3-208	ENST00000528865	TIMELESS	Q9UNS1	1208 aa		12.18	□□□□□ -0.46
CSTF3-208	ENST00000528865	RAD54L2	Q9Y4B4	1467 aa		12.18	□□□□□ -0.46
CSTF3-208	ENST00000528865	CFAP43	Q8NDM7	1665 aa		12.18	□□□□□ -0.46
CSTF3-208	ENST00000528865	CASKIN1	Q8WXD9	1431 aa		12.18	□□□□□ -0.46
CSTF3-208	ENST00000528865	MAPKBP1	O60336	1514 aa		12.17	□□□□□ -0.46
CSTF3-208	ENST00000528865	FYCO1	Q9BQS8	1478 aa		12.16	□□□□□ -0.46
CSTF3-208	ENST00000528865	CUL7	Q14999	1698 aa		12.16	□□□□□ -0.46
CSTF3-208	ENST00000528865	YTHDC1	Q96MU7	727 aa	Known RBP	12.15	□□□□□ -0.46
CSTF3-208	ENST00000528865	PCF11	O94913	1555 aa	Known RBP	12.13	□□□□□ -0.47
CSTF3-208	ENST00000528865	ITGAE	P38570	1179 aa		12.12	□□□□□ -0.47
CSTF3-208	ENST00000528865	LAMC3	Q9Y6N6	1575 aa		12.12	□□□□□ -0.47
CSTF3-208	ENST00000528865	FHOD3	Q2V2M9	1422 aa		12.11	□□□□□ -0.47
CSTF3-208	ENST00000528865	FMN1	Q68DA7	1419 aa		12.11	□□□□□ -0.47
CSTF3-208	ENST00000528865	NES	P48681	1621 aa		12.1	□□□□□ -0.47
CSTF3-208	ENST00000528865	URB2	Q14146	1524 aa	Known RBP	12.1	□□□□□ -0.47
CSTF3-208	ENST00000528865	WDR97	A6NE52	1622 aa		12.09	□□□□□ -0.47
CSTF3-208	ENST00000528865	P3H3	Q8IVL6	736 aa		12.09	□□□□□ -0.47
CSTF3-208	ENST00000528865	FAM50A	Q14320	339 aa	Known RBP	12.08	□□□□□ -0.48
CSTF3-208	ENST00000528865	CTTNBP2	Q8WZ74	1663 aa		12.07	□□□□□ -0.48
CSTF3-208	ENST00000528865	SNAPC4	Q5SXM2	1469 aa		12.07	□□□□□ -0.48
CSTF3-208	ENST00000528865	SAMD9	Q5K651	1589 aa		12.06	□□□□□ -0.48
CSTF3-208	ENST00000528865	ABCA5	Q8WWZ7	1642 aa		12.06	□□□□□ -0.48
CSTF3-208	ENST00000528865	PDS5B	Q9NTI5	1447 aa		12.04	□□□□□ -0.48
CSTF3-208	ENST00000528865	PPP1R15A	O75807	674 aa	Predicted RBP	12.04	□□□□□ -0.48
CSTF3-208	ENST00000528865	FGD6	Q6ZV73	1430 aa		12.03	□□□□□ -0.48
CSTF3-208	ENST00000528865	GRIN2B	Q13224	1484 aa		12.03	□□□□□ -0.48
CSTF3-208	ENST00000528865	GAPVD1	Q14C86	1478 aa		12.03	□□□□□ -0.48
CSTF3-208	ENST00000528865	SIN3A	Q96ST3	1273 aa		12.03	□□□□□ -0.48
CSTF3-208	ENST00000528865	THOC2	Q8NI27	1593 aa	Known RBP	12.02	□□□□□ -0.49
CSTF3-208	ENST00000528865	ATP1B4	Q9UN42	357 aa	Predicted RBP	12.01	□□□□□ -0.49
CSTF3-208	ENST00000528865	TDRD9	Q8NDG6	1382 aa	Known RBP	12.01	□□□□□ -0.49
CSTF3-208	ENST00000528865	HFM1	A2PYH4	1435 aa		12	□□□□□ -0.49
CSTF3-208	ENST00000528865	ARHGEF11	O15085	1522 aa		11.98	□□□□□ -0.49
CSTF3-208	ENST00000528865	PTPRK	Q15262	1439 aa		11.98	□□□□□ -0.49
CSTF3-208	ENST00000528865	MTUS2	Q5JR59	1369 aa		11.98	□□□□□ -0.49
CSTF3-208	ENST00000528865	NCOA2	Q15596	1464 aa		11.97	□□□□□ -0.49
CSTF3-208	ENST00000528865	MYOM3	Q5VTT5	1437 aa		11.97	□□□□□ -0.49
CSTF3-208	ENST00000528865	UACA	Q9BZF9	1416 aa		11.97	□□□□□ -0.49
CSTF3-208	ENST00000528865	TARBP1	Q13395	1621 aa	Known RBP	11.96	□□□□□ -0.5
CSTF3-208	ENST00000528865	EHBP1L1	Q8N3D4	1523 aa		11.96	□□□□□ -0.5
CSTF3-208	ENST00000528865	CCER2	I3L3R5	266 aa		11.95	□□□□□ -0.5
CSTF3-208	ENST00000528865	TCOF1	Q13428	1488 aa	Known RBP	11.95	□□□□□ -0.5
CSTF3-208	ENST00000528865	CCDC18	Q5T9S5	1454 aa		11.95	□□□□□ -0.5
CSTF3-208	ENST00000528865	NAIP	Q13075	1403 aa		11.94	□□□□□ -0.5
CSTF3-208	ENST00000528865	PTPN23	Q9H3S7	1636 aa		11.94	□□□□□ -0.5
CSTF3-208	ENST00000528865	UGGT2	Q9NYU1	1516 aa		11.94	□□□□□ -0.5
CSTF3-208	ENST00000528865	KIF21A	Q7Z4S6	1674 aa		11.94	□□□□□ -0.5
CSTF3-208	ENST00000528865	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.93	□□□□□ -0.5
CSTF3-208	ENST00000528865	LRRIQ1	Q96JM4	1722 aa		11.93	□□□□□ -0.5
CSTF3-208	ENST00000528865	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.92	□□□□□ -0.5
CSTF3-208	ENST00000528865	DDX10	Q13206	875 aa	Known RBP	11.91	□□□□□ -0.5
CSTF3-208	ENST00000528865	AKNA	Q7Z591	1439 aa		11.91	□□□□□ -0.5
CSTF3-208	ENST00000528865	MYT1	Q01538	1121 aa		11.9	□□□□□ -0.5
CSTF3-208	ENST00000528865	MAGI3	Q5TCQ9	1506 aa		11.89	□□□□□ -0.51
CSTF3-208	ENST00000528865	TONSL	Q96HA7	1378 aa		11.89	□□□□□ -0.51
CSTF3-208	ENST00000528865	MIA2	Q96PC5	1412 aa		11.88	□□□□□ -0.51
CSTF3-208	ENST00000528865	KCNH8	Q96L42	1107 aa		11.88	□□□□□ -0.51
CSTF3-208	ENST00000528865	DNAJC5B	Q9UF47	199 aa		11.88	□□□□□ -0.51
CSTF3-208	ENST00000528865	KDM5B	Q9UGL1	1544 aa		11.87	□□□□□ -0.51
CSTF3-208	ENST00000528865	HECW1	Q76N89	1606 aa		11.86	□□□□□ -0.51
CSTF3-208	ENST00000528865	EPRS	P07814	1512 aa	Known RBP	11.86	□□□□□ -0.51
CSTF3-208	ENST00000528865	ADAMTS12	P58397	1594 aa		11.85	□□□□□ -0.51
CSTF3-208	ENST00000528865	MRC2	Q9UBG0	1479 aa		11.85	□□□□□ -0.51
CSTF3-208	ENST00000528865	IQGAP2	Q13576	1575 aa		11.84	□□□□□ -0.51
CSTF3-208	ENST00000528865	PBRM1	Q86U86	1689 aa		11.84	□□□□□ -0.51
CSTF3-208	ENST00000528865	ANP32C	O43423	234 aa		11.83	□□□□□ -0.52
CSTF3-208	ENST00000528865	DENND4B	O75064	1496 aa	Predicted RBP	11.83	□□□□□ -0.52
CSTF3-208	ENST00000528865	WDR62	O43379	1518 aa		11.82	□□□□□ -0.52
CSTF3-208	ENST00000528865	GCC2	Q8IWJ2	1684 aa		11.82	□□□□□ -0.52
CSTF3-208	ENST00000528865	IFT140	Q96RY7	1462 aa		11.82	□□□□□ -0.52
CSTF3-208	ENST00000528865	ROCK1	Q13464	1354 aa		11.81	□□□□□ -0.52
CSTF3-208	ENST00000528865	KIAA0586	Q9BVV6	1533 aa		11.8	□□□□□ -0.52
CSTF3-208	ENST00000528865	MPHOSPH9	Q99550	1183 aa		11.79	□□□□□ -0.52
CSTF3-208	ENST00000528865	RRP7BP	Q9NSQ0	103 aa		11.79	□□□□□ -0.52
CSTF3-208	ENST00000528865	HIRIP3	Q9BW71	556 aa	Predicted RBP	11.78	□□□□□ -0.52
CSTF3-208	ENST00000528865	DISP1	Q96F81	1524 aa		11.76	□□□□□ -0.53
CSTF3-208	ENST00000528865	CDK13	Q14004	1512 aa	Known RBP	11.76	□□□□□ -0.53
CSTF3-208	ENST00000528865	TSHZ2	Q9NRE2	1034 aa		11.75	□□□□□ -0.53
CSTF3-208	ENST00000528865	CHIC2	Q9UKJ5	165 aa		11.75	□□□□□ -0.53
CSTF3-208	ENST00000528865	ABCC5	O15440	1437 aa		11.75	□□□□□ -0.53
CSTF3-208	ENST00000528865	TRIM52	Q96A61	297 aa		11.74	□□□□□ -0.53
CSTF3-208	ENST00000528865	ANKRD30B	Q9BXX2	1392 aa		11.74	□□□□□ -0.53
CSTF3-208	ENST00000528865	DAPK1	P53355	1430 aa		11.74	□□□□□ -0.53
CSTF3-208	ENST00000528865	KDM6B	O15054	1643 aa		11.74	□□□□□ -0.53
CSTF3-208	ENST00000528865	KIAA0556	O60303	1618 aa		11.74	□□□□□ -0.53
CSTF3-208	ENST00000528865	HSPA5	P11021	654 aa	Known RBP	11.73	□□□□□ -0.53
CSTF3-208	ENST00000528865	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.73	□□□□□ -0.53
CSTF3-208	ENST00000528865	NUP153	P49790	1475 aa	Known RBP	11.72	□□□□□ -0.53
CSTF3-208	ENST00000528865	WASHC2A	Q641Q2	1341 aa		11.72	□□□□□ -0.53
CSTF3-208	ENST00000528865	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.72	□□□□□ -0.53
CSTF3-208	ENST00000528865	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.72	□□□□□ -0.53
CSTF3-208	ENST00000528865	L3MBTL2	Q969R5	705 aa		11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms