RNA–Protein interactions for RNA: ENST00000527323.5

CAPN1-208, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,086 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-208ENST00000527323 MYT1Q01538 1121 aa18.4■□□□□ 0.54
CAPN1-208ENST00000527323 ZNF608Q9ULD9 1512 aaPredicted RBP18.4■□□□□ 0.54
CAPN1-208ENST00000527323 ARID3CA6NKF2 412 aa18.36■□□□□ 0.53
CAPN1-208ENST00000527323 MRC2Q9UBG0 1479 aa18.35■□□□□ 0.53
CAPN1-208ENST00000527323 VPS8Q8N3P4 1428 aa18.32■□□□□ 0.52
CAPN1-208ENST00000527323 PRXQ9BXM0 1461 aa18.31■□□□□ 0.52
CAPN1-208ENST00000527323 GAPVD1Q14C86 1478 aa18.29■□□□□ 0.52
CAPN1-208ENST00000527323 ABCA10Q8WWZ4 1543 aa18.27■□□□□ 0.51
CAPN1-208ENST00000527323 KIF21BO75037 1637 aa18.24■□□□□ 0.51
CAPN1-208ENST00000527323 CHMP7Q8WUX9 453 aaPredicted RBP18.19■□□□□ 0.5
CAPN1-208ENST00000527323 TARBP1Q13395 1621 aaKnown RBP18.17■□□□□ 0.5
CAPN1-208ENST00000527323 KANK4Q5T7N3 995 aaPredicted RBP18.16■□□□□ 0.5
CAPN1-208ENST00000527323 ARAP1Q96P48 1450 aa18.14■□□□□ 0.49
CAPN1-208ENST00000527323 WDR62O43379 1518 aa18.13■□□□□ 0.49
CAPN1-208ENST00000527323 CLSPNQ9HAW4 1339 aa18.13■□□□□ 0.49
CAPN1-208ENST00000527323 THOC2Q8NI27 1593 aaKnown RBP18.13■□□□□ 0.49
CAPN1-208ENST00000527323 FHOD3Q2V2M9 1422 aa18.12■□□□□ 0.49
CAPN1-208ENST00000527323 DHX57Q6P158 1386 aaKnown RBP18.12■□□□□ 0.49
CAPN1-208ENST00000527323 ITGAEP38570 1179 aa18.1■□□□□ 0.49
CAPN1-208ENST00000527323 SNAPC4Q5SXM2 1469 aa18.1■□□□□ 0.49
CAPN1-208ENST00000527323 IFT140Q96RY7 1462 aa18.08■□□□□ 0.48
CAPN1-208ENST00000527323 ARHGAP35Q9NRY4 1499 aa18.08■□□□□ 0.48
CAPN1-208ENST00000527323 PLPPR3Q6T4P5 718 aa18.08■□□□□ 0.48
CAPN1-208ENST00000527323 ERICH3Q5RHP9 1530 aa18.07■□□□□ 0.48
CAPN1-208ENST00000527323 ABCA5Q8WWZ7 1642 aa18.07■□□□□ 0.48
CAPN1-208ENST00000527323 WDR97A6NE52 1622 aa18.05■□□□□ 0.48
CAPN1-208ENST00000527323 EIF4G3O43432 1585 aaKnown RBP18.03■□□□□ 0.48
CAPN1-208ENST00000527323 SUPT16HQ9Y5B9 1047 aaKnown RBP18.03■□□□□ 0.48
CAPN1-208ENST00000527323 GRIN2BQ13224 1484 aa18.03■□□□□ 0.48
CAPN1-208ENST00000527323 PBRM1Q86U86 1689 aa17.98■□□□□ 0.47
CAPN1-208ENST00000527323 FHAD1B1AJZ9 1412 aa17.97■□□□□ 0.47
CAPN1-208ENST00000527323 CCNB3Q8WWL7 1395 aa17.92■□□□□ 0.46
CAPN1-208ENST00000527323 CUL7Q14999 1698 aa17.91■□□□□ 0.46
CAPN1-208ENST00000527323 RRBP1Q9P2E9 1410 aaKnown RBP17.9■□□□□ 0.46
CAPN1-208ENST00000527323 JPH4Q96JJ6 628 aa17.89■□□□□ 0.45
CAPN1-208ENST00000527323 ADAMTS12P58397 1594 aa17.89■□□□□ 0.45
CAPN1-208ENST00000527323 KCNH8Q96L42 1107 aa17.87■□□□□ 0.45
CAPN1-208ENST00000527323 GRIN2AQ12879 1464 aa17.86■□□□□ 0.45
CAPN1-208ENST00000527323 FAM50AQ14320 339 aaKnown RBP17.85■□□□□ 0.45
CAPN1-208ENST00000527323 TSHZ2Q9NRE2 1034 aa17.82■□□□□ 0.44
CAPN1-208ENST00000527323 RAB3GAP2Q9H2M9 1393 aa17.82■□□□□ 0.44
CAPN1-208ENST00000527323 DDX10Q13206 875 aaKnown RBP17.81■□□□□ 0.44
CAPN1-208ENST00000527323 BCANQ96GW7 911 aa17.81■□□□□ 0.44
CAPN1-208ENST00000527323 CTTNBP2Q8WZ74 1663 aa17.8■□□□□ 0.44
CAPN1-208ENST00000527323 SYNJ2O15056 1496 aa17.8■□□□□ 0.44
CAPN1-208ENST00000527323 CEP170Q5SW79 1584 aa17.78■□□□□ 0.44
CAPN1-208ENST00000527323 PCF11O94913 1555 aaKnown RBP17.77■□□□□ 0.44
CAPN1-208ENST00000527323 SIN3AQ96ST3 1273 aa17.77■□□□□ 0.44
CAPN1-208ENST00000527323 IQGAP2Q13576 1575 aa17.76■□□□□ 0.43
CAPN1-208ENST00000527323 MAGI1Q96QZ7 1491 aaPredicted RBP17.75■□□□□ 0.43
CAPN1-208ENST00000527323 FKBP8Q14318 412 aa17.74■□□□□ 0.43
CAPN1-208ENST00000527323 SETD5Q9C0A6 1442 aa17.72■□□□□ 0.43
CAPN1-208ENST00000527323 HIRIP3Q9BW71 556 aaPredicted RBP17.71■□□□□ 0.43
CAPN1-208ENST00000527323 MTUS2Q5JR59 1369 aa17.71■□□□□ 0.42
CAPN1-208ENST00000527323 KIAA0586Q9BVV6 1533 aa17.7■□□□□ 0.42
CAPN1-208ENST00000527323 PLB1Q6P1J6 1458 aa17.69■□□□□ 0.42
CAPN1-208ENST00000527323 CDK13Q14004 1512 aaKnown RBP17.69■□□□□ 0.42
CAPN1-208ENST00000527323 PHLDB1Q86UU1 1377 aa17.69■□□□□ 0.42
CAPN1-208ENST00000527323 PRG4Q92954 1404 aaPredicted RBP17.68■□□□□ 0.42
CAPN1-208ENST00000527323 CHD1O14646 1710 aa17.68■□□□□ 0.42
CAPN1-208ENST00000527323 DISP1Q96F81 1524 aa17.68■□□□□ 0.42
CAPN1-208ENST00000527323 NEFLP07196 543 aa17.68■□□□□ 0.42
CAPN1-208ENST00000527323 CHIC2Q9UKJ5 165 aa17.66■□□□□ 0.42
CAPN1-208ENST00000527323 ZNF777Q9ULD5 760 aaPredicted RBP17.66■□□□□ 0.42
CAPN1-208ENST00000527323 FMN1Q68DA7 1419 aa17.66■□□□□ 0.42
CAPN1-208ENST00000527323 MAPKBP1O60336 1514 aa17.66■□□□□ 0.42
CAPN1-208ENST00000527323 ERCC6L2Q5T890 1561 aa17.65■□□□□ 0.42
CAPN1-208ENST00000527323 ANP32EQ9BTT0 268 aa17.65■□□□□ 0.42
CAPN1-208ENST00000527323 RTN4Q9NQC3 1192 aaKnown RBP17.64■□□□□ 0.41
CAPN1-208ENST00000527323 ANP32CO43423 234 aa17.63■□□□□ 0.41
CAPN1-208ENST00000527323 TRIM52Q96A61 297 aa17.63■□□□□ 0.41
CAPN1-208ENST00000527323 CASKIN1Q8WXD9 1431 aa17.62■□□□□ 0.41
CAPN1-208ENST00000527323 LRRC9Q6ZRR7 1453 aa17.62■□□□□ 0.41
CAPN1-208ENST00000527323 TIAM1Q13009 1591 aa17.61■□□□□ 0.41
CAPN1-208ENST00000527323 NUP160Q12769 1436 aa17.61■□□□□ 0.41
CAPN1-208ENST00000527323 PPP1R15AO75807 674 aaPredicted RBP17.61■□□□□ 0.41
CAPN1-208ENST00000527323 SAMD9Q5K651 1589 aa17.61■□□□□ 0.41
CAPN1-208ENST00000527323 EFCAB5A4FU69 1503 aa17.6■□□□□ 0.41
CAPN1-208ENST00000527323 ZNF644Q9H582 1327 aaPredicted RBP17.6■□□□□ 0.41
CAPN1-208ENST00000527323 TIMELESSQ9UNS1 1208 aa17.58■□□□□ 0.41
CAPN1-208ENST00000527323 LRRIQ1Q96JM4 1722 aa17.57■□□□□ 0.4
CAPN1-208ENST00000527323 KIAA0556O60303 1618 aa17.56■□□□□ 0.4
CAPN1-208ENST00000527323 PTPRGP23470 1445 aa17.56■□□□□ 0.4
CAPN1-208ENST00000527323 CARMIL2Q6F5E8 1435 aa17.56■□□□□ 0.4
CAPN1-208ENST00000527323 MAGI3Q5TCQ9 1506 aa17.55■□□□□ 0.4
CAPN1-208ENST00000527323 MAP3K1Q13233 1512 aa17.55■□□□□ 0.4
CAPN1-208ENST00000527323 FYCO1Q9BQS8 1478 aa17.55■□□□□ 0.4
CAPN1-208ENST00000527323 OSCARQ8IYS5 282 aa17.55■□□□□ 0.4
CAPN1-208ENST00000527323 UGGT2Q9NYU1 1516 aa17.54■□□□□ 0.4
CAPN1-208ENST00000527323 CCER2I3L3R5 266 aa17.54■□□□□ 0.4
CAPN1-208ENST00000527323 RRP7BPQ9NSQ0 103 aa17.53■□□□□ 0.4
CAPN1-208ENST00000527323 EPRSP07814 1512 aaKnown RBP17.52■□□□□ 0.4
CAPN1-208ENST00000527323 TONSLQ96HA7 1378 aa17.51■□□□□ 0.39
CAPN1-208ENST00000527323 NUP153P49790 1475 aaKnown RBP17.5■□□□□ 0.39
CAPN1-208ENST00000527323 RBM19Q9Y4C8 960 aaKnown RBP17.48■□□□□ 0.39
CAPN1-208ENST00000527323 PLEKHD1A6NEE1 506 aa17.47■□□□□ 0.39
CAPN1-208ENST00000527323 NCOA2Q15596 1464 aa17.47■□□□□ 0.39
CAPN1-208ENST00000527323 CYB5RLQ6IPT4 315 aa17.46■□□□□ 0.39
CAPN1-208ENST00000527323 CDK11AQ9UQ88 783 aaPredicted RBP17.42■□□□□ 0.38
CAPN1-208ENST00000527323 CFDP1Q9UEE9 299 aaPredicted RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms