RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 ERICH6Q7L0X2 663 aa13.83□□□□□ -0.19
VCAN-210ENST00000513960 ATP1B4Q9UN42 357 aaPredicted RBP13.83□□□□□ -0.19
VCAN-210ENST00000513960 CCNB3Q8WWL7 1395 aa13.83□□□□□ -0.19
VCAN-210ENST00000513960 RRBP1Q9P2E9 1410 aaKnown RBP13.83□□□□□ -0.2
VCAN-210ENST00000513960 P3H3Q8IVL6 736 aa13.81□□□□□ -0.2
VCAN-210ENST00000513960 DHX57Q6P158 1386 aaKnown RBP13.8□□□□□ -0.2
VCAN-210ENST00000513960 FHAD1B1AJZ9 1412 aa13.78□□□□□ -0.2
VCAN-210ENST00000513960 RAD54L2Q9Y4B4 1467 aa13.78□□□□□ -0.2
VCAN-210ENST00000513960 DNMBPQ6XZF7 1577 aa13.77□□□□□ -0.2
VCAN-210ENST00000513960 NESP48681 1621 aa13.76□□□□□ -0.21
VCAN-210ENST00000513960 TOPBP1Q92547 1522 aa13.76□□□□□ -0.21
VCAN-210ENST00000513960 POLA1P09884 1462 aaPredicted RBP13.75□□□□□ -0.21
VCAN-210ENST00000513960 ABCA10Q8WWZ4 1543 aa13.74□□□□□ -0.21
VCAN-210ENST00000513960 TIAM1Q13009 1591 aa13.74□□□□□ -0.21
VCAN-210ENST00000513960 FAM50AQ14320 339 aaKnown RBP13.73□□□□□ -0.21
VCAN-210ENST00000513960 KCNH8Q96L42 1107 aa13.73□□□□□ -0.21
VCAN-210ENST00000513960 MAP3K1Q13233 1512 aa13.73□□□□□ -0.21
VCAN-210ENST00000513960 LRRC9Q6ZRR7 1453 aa13.71□□□□□ -0.22
VCAN-210ENST00000513960 FHOD3Q2V2M9 1422 aa13.69□□□□□ -0.22
VCAN-210ENST00000513960 TRIM52Q96A61 297 aa13.69□□□□□ -0.22
VCAN-210ENST00000513960 RAB3GAP2Q9H2M9 1393 aa13.68□□□□□ -0.22
VCAN-210ENST00000513960 DDX10Q13206 875 aaKnown RBP13.67□□□□□ -0.22
VCAN-210ENST00000513960 LAMC3Q9Y6N6 1575 aa13.67□□□□□ -0.22
VCAN-210ENST00000513960 PHLDB1Q86UU1 1377 aa13.66□□□□□ -0.22
VCAN-210ENST00000513960 PDS5BQ9NTI5 1447 aa13.66□□□□□ -0.22
VCAN-210ENST00000513960 TDRD9Q8NDG6 1382 aaKnown RBP13.66□□□□□ -0.22
VCAN-210ENST00000513960 CUL7Q14999 1698 aa13.65□□□□□ -0.22
VCAN-210ENST00000513960 EFCAB5A4FU69 1503 aa13.65□□□□□ -0.22
VCAN-210ENST00000513960 SETD5Q9C0A6 1442 aa13.65□□□□□ -0.22
VCAN-210ENST00000513960 PCF11O94913 1555 aaKnown RBP13.64□□□□□ -0.23
VCAN-210ENST00000513960 HIRIP3Q9BW71 556 aaPredicted RBP13.64□□□□□ -0.23
VCAN-210ENST00000513960 URB2Q14146 1524 aaKnown RBP13.63□□□□□ -0.23
VCAN-210ENST00000513960 RBM19Q9Y4C8 960 aaKnown RBP13.63□□□□□ -0.23
VCAN-210ENST00000513960 FYCO1Q9BQS8 1478 aa13.62□□□□□ -0.23
VCAN-210ENST00000513960 FMN1Q68DA7 1419 aa13.62□□□□□ -0.23
VCAN-210ENST00000513960 CASKIN1Q8WXD9 1431 aa13.62□□□□□ -0.23
VCAN-210ENST00000513960 IRX6P78412 446 aaPredicted RBP13.6□□□□□ -0.23
VCAN-210ENST00000513960 GAPVD1Q14C86 1478 aa13.6□□□□□ -0.23
VCAN-210ENST00000513960 CFAP43Q8NDM7 1665 aa13.59□□□□□ -0.23
VCAN-210ENST00000513960 MTUS2Q5JR59 1369 aa13.59□□□□□ -0.23
VCAN-210ENST00000513960 AQRO60306 1485 aaKnown RBP eCLIP13.59□□□□□ -0.23
VCAN-210ENST00000513960 CTTNBP2Q8WZ74 1663 aa13.58□□□□□ -0.24
VCAN-210ENST00000513960 DNAJC5BQ9UF47 199 aa13.57□□□□□ -0.24
VCAN-210ENST00000513960 SIN3AQ96ST3 1273 aa13.53□□□□□ -0.24
VCAN-210ENST00000513960 WDR97A6NE52 1622 aa13.52□□□□□ -0.24
VCAN-210ENST00000513960 ABCA5Q8WWZ7 1642 aa13.52□□□□□ -0.24
VCAN-210ENST00000513960 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.52□□□□□ -0.24
VCAN-210ENST00000513960 ANP32CO43423 234 aa13.52□□□□□ -0.25
VCAN-210ENST00000513960 MAPKBP1O60336 1514 aa13.52□□□□□ -0.25
VCAN-210ENST00000513960 CDK11AQ9UQ88 783 aaPredicted RBP13.51□□□□□ -0.25
VCAN-210ENST00000513960 FGD6Q6ZV73 1430 aa13.51□□□□□ -0.25
VCAN-210ENST00000513960 SNAPC4Q5SXM2 1469 aa13.49□□□□□ -0.25
VCAN-210ENST00000513960 TIMELESSQ9UNS1 1208 aa13.49□□□□□ -0.25
VCAN-210ENST00000513960 KIF21AQ7Z4S6 1674 aa13.48□□□□□ -0.25
VCAN-210ENST00000513960 SAMD9Q5K651 1589 aa13.46□□□□□ -0.25
VCAN-210ENST00000513960 CNGB1Q14028 1251 aaPredicted RBP13.45□□□□□ -0.26
VCAN-210ENST00000513960 HNRNPUQ00839 825 aaKnown RBP eCLIP13.44□□□□□ -0.26
VCAN-210ENST00000513960 NCOA2Q15596 1464 aa13.44□□□□□ -0.26
VCAN-210ENST00000513960 NBR1Q14596 966 aa13.44□□□□□ -0.26
VCAN-210ENST00000513960 MYOM3Q5VTT5 1437 aa13.44□□□□□ -0.26
VCAN-210ENST00000513960 GRIN2BQ13224 1484 aa13.44□□□□□ -0.26
VCAN-210ENST00000513960 TARBP1Q13395 1621 aaKnown RBP13.42□□□□□ -0.26
VCAN-210ENST00000513960 TONSLQ96HA7 1378 aa13.42□□□□□ -0.26
VCAN-210ENST00000513960 THOC2Q8NI27 1593 aaKnown RBP13.41□□□□□ -0.26
VCAN-210ENST00000513960 CCDC18Q5T9S5 1454 aa13.41□□□□□ -0.26
VCAN-210ENST00000513960 EHBP1L1Q8N3D4 1523 aa13.41□□□□□ -0.26
VCAN-210ENST00000513960 MRC2Q9UBG0 1479 aa13.41□□□□□ -0.26
VCAN-210ENST00000513960 PPP1R15AO75807 674 aaPredicted RBP13.4□□□□□ -0.26
VCAN-210ENST00000513960 HFM1A2PYH4 1435 aa13.4□□□□□ -0.26
VCAN-210ENST00000513960 SUPT6HQ7KZ85 1726 aaKnown RBP13.4□□□□□ -0.27
VCAN-210ENST00000513960 ARID3CA6NKF2 412 aa13.39□□□□□ -0.27
VCAN-210ENST00000513960 MSH5O43196 834 aa13.39□□□□□ -0.27
VCAN-210ENST00000513960 CHIC2Q9UKJ5 165 aa13.38□□□□□ -0.27
VCAN-210ENST00000513960 PTPRKQ15262 1439 aa13.37□□□□□ -0.27
VCAN-210ENST00000513960 UACAQ9BZF9 1416 aa13.37□□□□□ -0.27
VCAN-210ENST00000513960 IQGAP2Q13576 1575 aa13.37□□□□□ -0.27
VCAN-210ENST00000513960 RRP7BPQ9NSQ0 103 aa13.37□□□□□ -0.27
VCAN-210ENST00000513960 PBRM1Q86U86 1689 aa13.36□□□□□ -0.27
VCAN-210ENST00000513960 NAIPQ13075 1403 aa13.35□□□□□ -0.27
VCAN-210ENST00000513960 HECW1Q76N89 1606 aa13.35□□□□□ -0.27
VCAN-210ENST00000513960 ADAMTS12P58397 1594 aa13.34□□□□□ -0.27
VCAN-210ENST00000513960 LRRIQ1Q96JM4 1722 aa13.34□□□□□ -0.27
VCAN-210ENST00000513960 DEKP35659 375 aaKnown RBP13.34□□□□□ -0.27
VCAN-210ENST00000513960 UGGT2Q9NYU1 1516 aa13.34□□□□□ -0.27
VCAN-210ENST00000513960 PTPN23Q9H3S7 1636 aa13.34□□□□□ -0.27
VCAN-210ENST00000513960 IFT140Q96RY7 1462 aa13.33□□□□□ -0.28
VCAN-210ENST00000513960 EPRSP07814 1512 aaKnown RBP13.33□□□□□ -0.28
VCAN-210ENST00000513960 MAGI3Q5TCQ9 1506 aa13.3□□□□□ -0.28
VCAN-210ENST00000513960 ZNF608Q9ULD9 1512 aaPredicted RBP13.3□□□□□ -0.28
VCAN-210ENST00000513960 RTL5Q5HYW3 569 aaPredicted RBP13.3□□□□□ -0.28
VCAN-210ENST00000513960 CDK13Q14004 1512 aaKnown RBP13.29□□□□□ -0.28
VCAN-210ENST00000513960 B4GALNT3Q6L9W6 998 aa13.29□□□□□ -0.28
VCAN-210ENST00000513960 ARHGEF11O15085 1522 aa13.28□□□□□ -0.28
VCAN-210ENST00000513960 MIA2Q96PC5 1412 aa13.28□□□□□ -0.28
VCAN-210ENST00000513960 FAM9BQ8IZU0 186 aa13.28□□□□□ -0.28
VCAN-210ENST00000513960 SENP3-EIF4A1A0A087X0R7 540 aa13.27□□□□□ -0.28
VCAN-210ENST00000513960 KIAA0586Q9BVV6 1533 aa13.27□□□□□ -0.28
VCAN-210ENST00000513960 CHMP7Q8WUX9 453 aaPredicted RBP13.27□□□□□ -0.29
VCAN-210ENST00000513960 TCOF1Q13428 1488 aaKnown RBP13.27□□□□□ -0.29
VCAN-210ENST00000513960 FBLN2P98095 1184 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms