RNA–Protein interactions for RNA: ENST00000512332.5

CPNE4-210, Transcript of copine 4, humanhuman

TSL 1 (best) BASIC

Gene CPNE4, Length 2,230 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-210ENST00000512332 NESP48681 1621 aa13.64□□□□□ -0.23
CPNE4-210ENST00000512332 EFCAB5A4FU69 1503 aa13.64□□□□□ -0.23
CPNE4-210ENST00000512332 LRRC9Q6ZRR7 1453 aa13.64□□□□□ -0.23
CPNE4-210ENST00000512332 CENPBP07199 599 aaPredicted RBP13.63□□□□□ -0.23
CPNE4-210ENST00000512332 AQRO60306 1485 aaKnown RBP eCLIP13.61□□□□□ -0.23
CPNE4-210ENST00000512332 URB2Q14146 1524 aaKnown RBP13.59□□□□□ -0.23
CPNE4-210ENST00000512332 WDR97A6NE52 1622 aa13.59□□□□□ -0.23
CPNE4-210ENST00000512332 CFAP43Q8NDM7 1665 aa13.59□□□□□ -0.23
CPNE4-210ENST00000512332 PDS5BQ9NTI5 1447 aa13.59□□□□□ -0.23
CPNE4-210ENST00000512332 FYCO1Q9BQS8 1478 aa13.58□□□□□ -0.24
CPNE4-210ENST00000512332 NEUROD1Q13562 356 aa13.58□□□□□ -0.24
CPNE4-210ENST00000512332 CASKIN1Q8WXD9 1431 aa13.57□□□□□ -0.24
CPNE4-210ENST00000512332 PCF11O94913 1555 aaKnown RBP13.56□□□□□ -0.24
CPNE4-210ENST00000512332 CTTNBP2Q8WZ74 1663 aa13.56□□□□□ -0.24
CPNE4-210ENST00000512332 ABCA5Q8WWZ7 1642 aa13.55□□□□□ -0.24
CPNE4-210ENST00000512332 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.55□□□□□ -0.24
CPNE4-210ENST00000512332 PHLDB1Q86UU1 1377 aa13.54□□□□□ -0.24
CPNE4-210ENST00000512332 FMN1Q68DA7 1419 aa13.54□□□□□ -0.24
CPNE4-210ENST00000512332 FHOD3Q2V2M9 1422 aa13.53□□□□□ -0.24
CPNE4-210ENST00000512332 RAB3GAP2Q9H2M9 1393 aa13.52□□□□□ -0.24
CPNE4-210ENST00000512332 SETD5Q9C0A6 1442 aa13.52□□□□□ -0.25
CPNE4-210ENST00000512332 GAPVD1Q14C86 1478 aa13.51□□□□□ -0.25
CPNE4-210ENST00000512332 MIER1Q8N108 512 aa13.5□□□□□ -0.25
CPNE4-210ENST00000512332 P3H3Q8IVL6 736 aa13.49□□□□□ -0.25
CPNE4-210ENST00000512332 SAMD9Q5K651 1589 aa13.49□□□□□ -0.25
CPNE4-210ENST00000512332 TDRD9Q8NDG6 1382 aaKnown RBP13.48□□□□□ -0.25
CPNE4-210ENST00000512332 SNAPC4Q5SXM2 1469 aa13.48□□□□□ -0.25
CPNE4-210ENST00000512332 ITGAEP38570 1179 aa13.47□□□□□ -0.25
CPNE4-210ENST00000512332 MAPKBP1O60336 1514 aa13.46□□□□□ -0.25
CPNE4-210ENST00000512332 TARBP1Q13395 1621 aaKnown RBP13.45□□□□□ -0.26
CPNE4-210ENST00000512332 PELP1Q8IZL8 1130 aaKnown RBP13.44□□□□□ -0.26
CPNE4-210ENST00000512332 THOC2Q8NI27 1593 aaKnown RBP13.44□□□□□ -0.26
CPNE4-210ENST00000512332 KIF21AQ7Z4S6 1674 aa13.44□□□□□ -0.26
CPNE4-210ENST00000512332 TIMELESSQ9UNS1 1208 aa13.44□□□□□ -0.26
CPNE4-210ENST00000512332 FAM50AQ14320 339 aaKnown RBP13.43□□□□□ -0.26
CPNE4-210ENST00000512332 GTF3C3Q9Y5Q9 886 aa13.43□□□□□ -0.26
CPNE4-210ENST00000512332 ATP1B4Q9UN42 357 aaPredicted RBP13.42□□□□□ -0.26
CPNE4-210ENST00000512332 GRIN2BQ13224 1484 aa13.41□□□□□ -0.26
CPNE4-210ENST00000512332 DNAJC5BQ9UF47 199 aa13.41□□□□□ -0.26
CPNE4-210ENST00000512332 FGD6Q6ZV73 1430 aa13.41□□□□□ -0.26
CPNE4-210ENST00000512332 MTUS2Q5JR59 1369 aa13.38□□□□□ -0.27
CPNE4-210ENST00000512332 MRC2Q9UBG0 1479 aa13.36□□□□□ -0.27
CPNE4-210ENST00000512332 EHBP1L1Q8N3D4 1523 aa13.35□□□□□ -0.27
CPNE4-210ENST00000512332 LRRIQ1Q96JM4 1722 aa13.35□□□□□ -0.27
CPNE4-210ENST00000512332 CCDC18Q5T9S5 1454 aa13.35□□□□□ -0.27
CPNE4-210ENST00000512332 MYOM3Q5VTT5 1437 aa13.35□□□□□ -0.27
CPNE4-210ENST00000512332 PBRM1Q86U86 1689 aa13.34□□□□□ -0.27
CPNE4-210ENST00000512332 HFM1A2PYH4 1435 aa13.34□□□□□ -0.27
CPNE4-210ENST00000512332 NCOA2Q15596 1464 aa13.34□□□□□ -0.27
CPNE4-210ENST00000512332 YTHDC1Q96MU7 727 aaKnown RBP13.33□□□□□ -0.27
CPNE4-210ENST00000512332 SUPT6HQ7KZ85 1726 aaKnown RBP13.33□□□□□ -0.28
CPNE4-210ENST00000512332 ARHGEF11O15085 1522 aa13.33□□□□□ -0.28
CPNE4-210ENST00000512332 ADAMTS12P58397 1594 aa13.33□□□□□ -0.28
CPNE4-210ENST00000512332 IQGAP2Q13576 1575 aa13.32□□□□□ -0.28
CPNE4-210ENST00000512332 UGGT2Q9NYU1 1516 aa13.3□□□□□ -0.28
CPNE4-210ENST00000512332 IFT140Q96RY7 1462 aa13.29□□□□□ -0.28
CPNE4-210ENST00000512332 UACAQ9BZF9 1416 aa13.29□□□□□ -0.28
CPNE4-210ENST00000512332 HECW1Q76N89 1606 aa13.29□□□□□ -0.28
CPNE4-210ENST00000512332 PTPRKQ15262 1439 aa13.29□□□□□ -0.28
CPNE4-210ENST00000512332 SIN3AQ96ST3 1273 aa13.28□□□□□ -0.28
CPNE4-210ENST00000512332 PTPN23Q9H3S7 1636 aa13.28□□□□□ -0.28
CPNE4-210ENST00000512332 TCOF1Q13428 1488 aaKnown RBP13.28□□□□□ -0.28
CPNE4-210ENST00000512332 PPP1R15AO75807 674 aaPredicted RBP13.27□□□□□ -0.28
CPNE4-210ENST00000512332 WDR62O43379 1518 aa13.27□□□□□ -0.28
CPNE4-210ENST00000512332 NAIPQ13075 1403 aa13.27□□□□□ -0.29
CPNE4-210ENST00000512332 EPRSP07814 1512 aaKnown RBP13.26□□□□□ -0.29
CPNE4-210ENST00000512332 MAGI3Q5TCQ9 1506 aa13.26□□□□□ -0.29
CPNE4-210ENST00000512332 MIA2Q96PC5 1412 aa13.25□□□□□ -0.29
CPNE4-210ENST00000512332 AKNAQ7Z591 1439 aa13.24□□□□□ -0.29
CPNE4-210ENST00000512332 KIAA0586Q9BVV6 1533 aa13.23□□□□□ -0.29
CPNE4-210ENST00000512332 ZNF608Q9ULD9 1512 aaPredicted RBP13.2□□□□□ -0.3
CPNE4-210ENST00000512332 TONSLQ96HA7 1378 aa13.18□□□□□ -0.3
CPNE4-210ENST00000512332 GCC2Q8IWJ2 1684 aa13.18□□□□□ -0.3
CPNE4-210ENST00000512332 DISP1Q96F81 1524 aa13.18□□□□□ -0.3
CPNE4-210ENST00000512332 KIAA0556O60303 1618 aa13.17□□□□□ -0.3
CPNE4-210ENST00000512332 GRIN2AQ12879 1464 aa13.17□□□□□ -0.3
CPNE4-210ENST00000512332 CDK13Q14004 1512 aaKnown RBP13.16□□□□□ -0.3
CPNE4-210ENST00000512332 MAGI1Q96QZ7 1491 aaPredicted RBP13.14□□□□□ -0.31
CPNE4-210ENST00000512332 EIF4G3O43432 1585 aaKnown RBP13.14□□□□□ -0.31
CPNE4-210ENST00000512332 ROCK1Q13464 1354 aa13.14□□□□□ -0.31
CPNE4-210ENST00000512332 NUP153P49790 1475 aaKnown RBP13.13□□□□□ -0.31
CPNE4-210ENST00000512332 DDX10Q13206 875 aaKnown RBP13.12□□□□□ -0.31
CPNE4-210ENST00000512332 CDK11AQ9UQ88 783 aaPredicted RBP13.12□□□□□ -0.31
CPNE4-210ENST00000512332 KDM5BQ9UGL1 1544 aa13.11□□□□□ -0.31
CPNE4-210ENST00000512332 RAPGEF6Q8TEU7 1601 aa13.11□□□□□ -0.31
CPNE4-210ENST00000512332 RRP7BPQ9NSQ0 103 aa13.11□□□□□ -0.31
CPNE4-210ENST00000512332 DENND4BO75064 1496 aaPredicted RBP13.1□□□□□ -0.31
CPNE4-210ENST00000512332 SYNJ2O15056 1496 aa13.1□□□□□ -0.31
CPNE4-210ENST00000512332 CCER2I3L3R5 266 aa13.09□□□□□ -0.31
CPNE4-210ENST00000512332 DAPK1P53355 1430 aa13.08□□□□□ -0.32
CPNE4-210ENST00000512332 CHIC2Q9UKJ5 165 aa13.08□□□□□ -0.32
CPNE4-210ENST00000512332 DNMT1P26358 1616 aaKnown RBP13.07□□□□□ -0.32
CPNE4-210ENST00000512332 ERCC6Q03468 1493 aa13.07□□□□□ -0.32
CPNE4-210ENST00000512332 MPHOSPH9Q99550 1183 aa13.07□□□□□ -0.32
CPNE4-210ENST00000512332 ABCC5O15440 1437 aa13.06□□□□□ -0.32
CPNE4-210ENST00000512332 TROQ12816 1431 aaPredicted RBP13.06□□□□□ -0.32
CPNE4-210ENST00000512332 KDM6BO15054 1643 aa13.06□□□□□ -0.32
CPNE4-210ENST00000512332 NUP160Q12769 1436 aa13.05□□□□□ -0.32
CPNE4-210ENST00000512332 CEP170Q5SW79 1584 aa13.05□□□□□ -0.32
CPNE4-210ENST00000512332 CHMP7Q8WUX9 453 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms