RNA–Protein interactions for RNA: ENST00000509084.1

RFC1-211, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 483 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-211ENST00000509084 SYNJ2O15056 1496 aa16.84■□□□□ 0.29
RFC1-211ENST00000509084 GRIN2AQ12879 1464 aa16.8■□□□□ 0.28
RFC1-211ENST00000509084 TNIKQ9UKE5 1360 aa16.79■□□□□ 0.28
RFC1-211ENST00000509084 LOC105371045A0A1W2PR82 267 aa16.79■□□□□ 0.28
RFC1-211ENST00000509084 UBTFP17480 764 aaKnown RBP16.78■□□□□ 0.28
RFC1-211ENST00000509084 CHMP7Q8WUX9 453 aaPredicted RBP16.76■□□□□ 0.27
RFC1-211ENST00000509084 CTTNBP2Q8WZ74 1663 aa16.75■□□□□ 0.27
RFC1-211ENST00000509084 EHMT2Q96KQ7 1210 aa16.74■□□□□ 0.27
RFC1-211ENST00000509084 CHD1O14646 1710 aa16.72■□□□□ 0.27
RFC1-211ENST00000509084 NUP160Q12769 1436 aa16.7■□□□□ 0.26
RFC1-211ENST00000509084 FBLN2P98095 1184 aa16.69■□□□□ 0.26
RFC1-211ENST00000509084 IQGAP2Q13576 1575 aa16.67■□□□□ 0.26
RFC1-211ENST00000509084 CEP170Q5SW79 1584 aa16.67■□□□□ 0.26
RFC1-211ENST00000509084 KIAA0586Q9BVV6 1533 aa16.66■□□□□ 0.26
RFC1-211ENST00000509084 CEP162Q5TB80 1403 aa16.66■□□□□ 0.26
RFC1-211ENST00000509084 CLIP1P30622 1438 aa16.62■□□□□ 0.25
RFC1-211ENST00000509084 EFCAB5A4FU69 1503 aa16.61■□□□□ 0.25
RFC1-211ENST00000509084 UGGT2Q9NYU1 1516 aa16.58■□□□□ 0.24
RFC1-211ENST00000509084 CLASP1Q7Z460 1538 aa16.56■□□□□ 0.24
RFC1-211ENST00000509084 SAMD9Q5K651 1589 aa16.55■□□□□ 0.24
RFC1-211ENST00000509084 ARHGAP35Q9NRY4 1499 aa16.54■□□□□ 0.24
RFC1-211ENST00000509084 SHROOM2Q13796 1616 aa16.52■□□□□ 0.23
RFC1-211ENST00000509084 OSCARQ8IYS5 282 aa16.5■□□□□ 0.23
RFC1-211ENST00000509084 KIAA0556O60303 1618 aa16.49■□□□□ 0.23
RFC1-211ENST00000509084 RANGAP1P46060 587 aaPredicted RBP16.49■□□□□ 0.23
RFC1-211ENST00000509084 CARMIL2Q6F5E8 1435 aa16.49■□□□□ 0.23
RFC1-211ENST00000509084 POTEDQ86YR6 584 aa16.49■□□□□ 0.23
RFC1-211ENST00000509084 JPH4Q96JJ6 628 aa16.48■□□□□ 0.23
RFC1-211ENST00000509084 ARAP1Q96P48 1450 aa16.48■□□□□ 0.23
RFC1-211ENST00000509084 DISP1Q96F81 1524 aa16.46■□□□□ 0.23
RFC1-211ENST00000509084 SCAF1Q9H7N4 1312 aaKnown RBP16.45■□□□□ 0.22
RFC1-211ENST00000509084 VPS8Q8N3P4 1428 aa16.45■□□□□ 0.22
RFC1-211ENST00000509084 FMN1Q68DA7 1419 aa16.44■□□□□ 0.22
RFC1-211ENST00000509084 FHOD3Q2V2M9 1422 aa16.43■□□□□ 0.22
RFC1-211ENST00000509084 PRG4Q92954 1404 aaPredicted RBP16.43■□□□□ 0.22
RFC1-211ENST00000509084 P3H3Q8IVL6 736 aa16.38■□□□□ 0.21
RFC1-211ENST00000509084 FYCO1Q9BQS8 1478 aa16.35■□□□□ 0.21
RFC1-211ENST00000509084 PCF11O94913 1555 aaKnown RBP16.34■□□□□ 0.21
RFC1-211ENST00000509084 CASKIN1Q8WXD9 1431 aa16.33■□□□□ 0.2
RFC1-211ENST00000509084 HECW1Q76N89 1606 aa16.31■□□□□ 0.2
RFC1-211ENST00000509084 ERCC6L2Q5T890 1561 aa16.31■□□□□ 0.2
RFC1-211ENST00000509084 PTPRGP23470 1445 aa16.3■□□□□ 0.2
RFC1-211ENST00000509084 PPP4R3CPQ6ZMV5 832 aa16.29■□□□□ 0.2
RFC1-211ENST00000509084 RAPGEF6Q8TEU7 1601 aa16.29■□□□□ 0.2
RFC1-211ENST00000509084 APLP2Q06481 763 aa16.27■□□□□ 0.2
RFC1-211ENST00000509084 MAP3K1Q13233 1512 aa16.27■□□□□ 0.2
RFC1-211ENST00000509084 ABCA8O94911 1581 aa16.26■□□□□ 0.19
RFC1-211ENST00000509084 CCDC18Q5T9S5 1454 aa16.26■□□□□ 0.19
RFC1-211ENST00000509084 ARHGEF11O15085 1522 aa16.25■□□□□ 0.19
RFC1-211ENST00000509084 MAPK8IP2Q13387 824 aaPredicted RBP16.25■□□□□ 0.19
RFC1-211ENST00000509084 CFAP43Q8NDM7 1665 aa16.24■□□□□ 0.19
RFC1-211ENST00000509084 PLB1Q6P1J6 1458 aa16.22■□□□□ 0.19
RFC1-211ENST00000509084 UACAQ9BZF9 1416 aa16.22■□□□□ 0.19
RFC1-211ENST00000509084 TIAM1Q13009 1591 aa16.21■□□□□ 0.19
RFC1-211ENST00000509084 TTBK1Q5TCY1 1321 aaPredicted RBP16.21■□□□□ 0.19
RFC1-211ENST00000509084 ABCC2Q92887 1545 aa16.21■□□□□ 0.19
RFC1-211ENST00000509084 UHRF1BP1LA0JNW5 1464 aa16.21■□□□□ 0.19
RFC1-211ENST00000509084 NUP153P49790 1475 aaKnown RBP16.21■□□□□ 0.19
RFC1-211ENST00000509084 EPRSP07814 1512 aaKnown RBP16.19■□□□□ 0.18
RFC1-211ENST00000509084 RIMBP3CA6NJZ7 1639 aa16.19■□□□□ 0.18
RFC1-211ENST00000509084 RIMBP3BA6NNM3 1639 aa16.19■□□□□ 0.18
RFC1-211ENST00000509084 RIMBP3Q9UFD9 1639 aa16.19■□□□□ 0.18
RFC1-211ENST00000509084 ATP1B4Q9UN42 357 aaPredicted RBP16.19■□□□□ 0.18
RFC1-211ENST00000509084 LRRIQ1Q96JM4 1722 aa16.16■□□□□ 0.18
RFC1-211ENST00000509084 DMRT2Q9Y5R5 561 aa16.15■□□□□ 0.18
RFC1-211ENST00000509084 CDK13Q14004 1512 aaKnown RBP16.13■□□□□ 0.17
RFC1-211ENST00000509084 EHBP1L1Q8N3D4 1523 aa16.13■□□□□ 0.17
RFC1-211ENST00000509084 LRRC9Q6ZRR7 1453 aa16.12■□□□□ 0.17
RFC1-211ENST00000509084 CDK11AQ9UQ88 783 aaPredicted RBP16.12■□□□□ 0.17
RFC1-211ENST00000509084 ADCY10Q96PN6 1610 aa16.12■□□□□ 0.17
RFC1-211ENST00000509084 KDM5BQ9UGL1 1544 aa16.11■□□□□ 0.17
RFC1-211ENST00000509084 MTUS2Q5JR59 1369 aa16.1■□□□□ 0.17
RFC1-211ENST00000509084 ATP10BO94823 1461 aa16.1■□□□□ 0.17
RFC1-211ENST00000509084 ZCCHC11Q5TAX3 1644 aaKnown RBP16.08■□□□□ 0.16
RFC1-211ENST00000509084 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.07■□□□□ 0.16
RFC1-211ENST00000509084 HNRNPUL2Q1KMD3 747 aaKnown RBP16.07■□□□□ 0.16
RFC1-211ENST00000509084 TROQ12816 1431 aaPredicted RBP16.05■□□□□ 0.16
RFC1-211ENST00000509084 KANK4Q5T7N3 995 aaPredicted RBP16.05■□□□□ 0.16
RFC1-211ENST00000509084 SUPT6HQ7KZ85 1726 aaKnown RBP16.05■□□□□ 0.16
RFC1-211ENST00000509084 MAGI3Q5TCQ9 1506 aa16.04■□□□□ 0.16
RFC1-211ENST00000509084 PLEKHD1A6NEE1 506 aa16.03■□□□□ 0.16
RFC1-211ENST00000509084 ARID3CA6NKF2 412 aa16.03■□□□□ 0.16
RFC1-211ENST00000509084 NPM1P06748 294 aaKnown RBP eCLIP16.02■□□□□ 0.16
RFC1-211ENST00000509084 CYB5RLQ6IPT4 315 aa16.01■□□□□ 0.15
RFC1-211ENST00000509084 KIF14Q15058 1648 aa16.01■□□□□ 0.15
RFC1-211ENST00000509084 PPARGC1BQ86YN6 1023 aaKnown RBP15.99■□□□□ 0.15
RFC1-211ENST00000509084 NCOA2Q15596 1464 aa15.98■□□□□ 0.15
RFC1-211ENST00000509084 WDR7Q9Y4E6 1490 aa15.97■□□□□ 0.15
RFC1-211ENST00000509084 MAPKBP1O60336 1514 aa15.96■□□□□ 0.15
RFC1-211ENST00000509084 ASXL2Q76L83 1435 aa15.94■□□□□ 0.14
RFC1-211ENST00000509084 ITSN2Q9NZM3 1697 aa15.93■□□□□ 0.14
RFC1-211ENST00000509084 CNKSR2Q8WXI2 1034 aa15.93■□□□□ 0.14
RFC1-211ENST00000509084 MYOM3Q5VTT5 1437 aa15.92■□□□□ 0.14
RFC1-211ENST00000509084 PHLDB1Q86UU1 1377 aa15.91■□□□□ 0.14
RFC1-211ENST00000509084 ABCC10Q5T3U5 1492 aa15.91■□□□□ 0.14
RFC1-211ENST00000509084 CCNB3Q8WWL7 1395 aa15.9■□□□□ 0.14
RFC1-211ENST00000509084 TRIM26Q12899 539 aaPredicted RBP15.9■□□□□ 0.14
RFC1-211ENST00000509084 RRBP1Q9P2E9 1410 aaKnown RBP15.9■□□□□ 0.14
RFC1-211ENST00000509084 MIA2Q96PC5 1412 aa15.88■□□□□ 0.13
RFC1-211ENST00000509084 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms