RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TDRD9Q8NDG6 1382 aaKnown RBP18.07■□□□□ 0.48
NUP54-202ENST00000502850 WDR97A6NE52 1622 aa18.07■□□□□ 0.48
NUP54-202ENST00000502850 CHD1O14646 1710 aa18.06■□□□□ 0.48
NUP54-202ENST00000502850 MAP3K1Q13233 1512 aa18.05■□□□□ 0.48
NUP54-202ENST00000502850 RANGAP1P46060 587 aaPredicted RBP18.04■□□□□ 0.48
NUP54-202ENST00000502850 FBLN2P98095 1184 aa18.03■□□□□ 0.48
NUP54-202ENST00000502850 RIMBP3CA6NJZ7 1639 aa18.01■□□□□ 0.47
NUP54-202ENST00000502850 RIMBP3BA6NNM3 1639 aa18.01■□□□□ 0.47
NUP54-202ENST00000502850 RIMBP3Q9UFD9 1639 aa18.01■□□□□ 0.47
NUP54-202ENST00000502850 CTTNBP2Q8WZ74 1663 aa18■□□□□ 0.47
NUP54-202ENST00000502850 EFCAB5A4FU69 1503 aa18■□□□□ 0.47
NUP54-202ENST00000502850 FHAD1B1AJZ9 1412 aa17.99■□□□□ 0.47
NUP54-202ENST00000502850 ABCA5Q8WWZ7 1642 aa17.96■□□□□ 0.47
NUP54-202ENST00000502850 SNAPC4Q5SXM2 1469 aa17.96■□□□□ 0.47
NUP54-202ENST00000502850 RRBP1Q9P2E9 1410 aaKnown RBP17.96■□□□□ 0.47
NUP54-202ENST00000502850 TIAM1Q13009 1591 aa17.96■□□□□ 0.47
NUP54-202ENST00000502850 ARHGEF11O15085 1522 aa17.95■□□□□ 0.46
NUP54-202ENST00000502850 GRIN2BQ13224 1484 aa17.95■□□□□ 0.46
NUP54-202ENST00000502850 CFAP43Q8NDM7 1665 aa17.94■□□□□ 0.46
NUP54-202ENST00000502850 MAGI1Q96QZ7 1491 aaPredicted RBP17.93■□□□□ 0.46
NUP54-202ENST00000502850 CHMP7Q8WUX9 453 aaPredicted RBP17.92■□□□□ 0.46
NUP54-202ENST00000502850 HNRNPUL2Q1KMD3 747 aaKnown RBP17.91■□□□□ 0.46
NUP54-202ENST00000502850 GAPVD1Q14C86 1478 aa17.91■□□□□ 0.46
NUP54-202ENST00000502850 PBRM1Q86U86 1689 aa17.9■□□□□ 0.46
NUP54-202ENST00000502850 CLSPNQ9HAW4 1339 aa17.89■□□□□ 0.45
NUP54-202ENST00000502850 SYNJ2O15056 1496 aa17.86■□□□□ 0.45
NUP54-202ENST00000502850 FYCO1Q9BQS8 1478 aa17.86■□□□□ 0.45
NUP54-202ENST00000502850 CYB5RLQ6IPT4 315 aa17.86■□□□□ 0.45
NUP54-202ENST00000502850 PCF11O94913 1555 aaKnown RBP17.85■□□□□ 0.45
NUP54-202ENST00000502850 KANK4Q5T7N3 995 aaPredicted RBP17.85■□□□□ 0.45
NUP54-202ENST00000502850 CCNB3Q8WWL7 1395 aa17.85■□□□□ 0.45
NUP54-202ENST00000502850 LRRC9Q6ZRR7 1453 aa17.83■□□□□ 0.44
NUP54-202ENST00000502850 CLASP1Q7Z460 1538 aa17.82■□□□□ 0.44
NUP54-202ENST00000502850 FMN1Q68DA7 1419 aa17.8■□□□□ 0.44
NUP54-202ENST00000502850 CASKIN1Q8WXD9 1431 aa17.8■□□□□ 0.44
NUP54-202ENST00000502850 SAMD9Q5K651 1589 aa17.79■□□□□ 0.44
NUP54-202ENST00000502850 FHOD3Q2V2M9 1422 aa17.74■□□□□ 0.43
NUP54-202ENST00000502850 ZNF316A6NFI3 1004 aaPredicted RBP17.72■□□□□ 0.43
NUP54-202ENST00000502850 DHX57Q6P158 1386 aaKnown RBP17.71■□□□□ 0.43
NUP54-202ENST00000502850 GRIN2AQ12879 1464 aa17.71■□□□□ 0.43
NUP54-202ENST00000502850 ADAMTS12P58397 1594 aa17.71■□□□□ 0.43
NUP54-202ENST00000502850 DIEXFQ68CQ4 756 aaKnown RBP17.7■□□□□ 0.42
NUP54-202ENST00000502850 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.68■□□□□ 0.42
NUP54-202ENST00000502850 NUP160Q12769 1436 aa17.64■□□□□ 0.41
NUP54-202ENST00000502850 PHLDB1Q86UU1 1377 aa17.64■□□□□ 0.41
NUP54-202ENST00000502850 IQGAP2Q13576 1575 aa17.63■□□□□ 0.41
NUP54-202ENST00000502850 CEP170Q5SW79 1584 aa17.63■□□□□ 0.41
NUP54-202ENST00000502850 P3H3Q8IVL6 736 aa17.61■□□□□ 0.41
NUP54-202ENST00000502850 TRHP20396 242 aaPredicted RBP17.61■□□□□ 0.41
NUP54-202ENST00000502850 CCDC18Q5T9S5 1454 aa17.61■□□□□ 0.41
NUP54-202ENST00000502850 EHBP1L1Q8N3D4 1523 aa17.61■□□□□ 0.41
NUP54-202ENST00000502850 SUPT6HQ7KZ85 1726 aaKnown RBP17.59■□□□□ 0.41
NUP54-202ENST00000502850 HECW1Q76N89 1606 aa17.59■□□□□ 0.41
NUP54-202ENST00000502850 SETD5Q9C0A6 1442 aa17.59■□□□□ 0.41
NUP54-202ENST00000502850 LRRIQ1Q96JM4 1722 aa17.58■□□□□ 0.4
NUP54-202ENST00000502850 RAB3GAP2Q9H2M9 1393 aa17.56■□□□□ 0.4
NUP54-202ENST00000502850 ATP1B4Q9UN42 357 aaPredicted RBP17.56■□□□□ 0.4
NUP54-202ENST00000502850 ERCC6L2Q5T890 1561 aa17.56■□□□□ 0.4
NUP54-202ENST00000502850 MTUS2Q5JR59 1369 aa17.56■□□□□ 0.4
NUP54-202ENST00000502850 SHROOM2Q13796 1616 aa17.55■□□□□ 0.4
NUP54-202ENST00000502850 FGD6Q6ZV73 1430 aa17.54■□□□□ 0.4
NUP54-202ENST00000502850 UGGT2Q9NYU1 1516 aa17.53■□□□□ 0.4
NUP54-202ENST00000502850 ITGAEP38570 1179 aa17.5■□□□□ 0.39
NUP54-202ENST00000502850 FAM50AQ14320 339 aaKnown RBP17.5■□□□□ 0.39
NUP54-202ENST00000502850 JPH4Q96JJ6 628 aa17.5■□□□□ 0.39
NUP54-202ENST00000502850 CENPBP07199 599 aaPredicted RBP17.49■□□□□ 0.39
NUP54-202ENST00000502850 MAPKBP1O60336 1514 aa17.48■□□□□ 0.39
NUP54-202ENST00000502850 MYOM3Q5VTT5 1437 aa17.48■□□□□ 0.39
NUP54-202ENST00000502850 NCOA2Q15596 1464 aa17.48■□□□□ 0.39
NUP54-202ENST00000502850 PRG4Q92954 1404 aaPredicted RBP17.47■□□□□ 0.39
NUP54-202ENST00000502850 KIAA0586Q9BVV6 1533 aa17.46■□□□□ 0.39
NUP54-202ENST00000502850 KIAA0556O60303 1618 aa17.43■□□□□ 0.38
NUP54-202ENST00000502850 PTPN23Q9H3S7 1636 aa17.43■□□□□ 0.38
NUP54-202ENST00000502850 EPRSP07814 1512 aaKnown RBP17.42■□□□□ 0.38
NUP54-202ENST00000502850 HFM1A2PYH4 1435 aa17.4■□□□□ 0.38
NUP54-202ENST00000502850 TIMELESSQ9UNS1 1208 aa17.4■□□□□ 0.38
NUP54-202ENST00000502850 TCOF1Q13428 1488 aaKnown RBP17.4■□□□□ 0.38
NUP54-202ENST00000502850 ACIN1Q9UKV3 1341 aaKnown RBP17.38■□□□□ 0.37
NUP54-202ENST00000502850 MIA2Q96PC5 1412 aa17.37■□□□□ 0.37
NUP54-202ENST00000502850 MAGI3Q5TCQ9 1506 aa17.36■□□□□ 0.37
NUP54-202ENST00000502850 GCC2Q8IWJ2 1684 aa17.36■□□□□ 0.37
NUP54-202ENST00000502850 AKNAQ7Z591 1439 aa17.35■□□□□ 0.37
NUP54-202ENST00000502850 RAPGEF6Q8TEU7 1601 aa17.35■□□□□ 0.37
NUP54-202ENST00000502850 DISP1Q96F81 1524 aa17.34■□□□□ 0.37
NUP54-202ENST00000502850 UACAQ9BZF9 1416 aa17.33■□□□□ 0.36
NUP54-202ENST00000502850 CDK13Q14004 1512 aaKnown RBP17.31■□□□□ 0.36
NUP54-202ENST00000502850 NPM1P06748 294 aaKnown RBP eCLIP17.29■□□□□ 0.36
NUP54-202ENST00000502850 NAIPQ13075 1403 aa17.28■□□□□ 0.36
NUP54-202ENST00000502850 SCAF1Q9H7N4 1312 aaKnown RBP17.28■□□□□ 0.36
NUP54-202ENST00000502850 PTPRKQ15262 1439 aa17.26■□□□□ 0.35
NUP54-202ENST00000502850 CARMIL2Q6F5E8 1435 aa17.26■□□□□ 0.35
NUP54-202ENST00000502850 ITSN2Q9NZM3 1697 aa17.25■□□□□ 0.35
NUP54-202ENST00000502850 NUP153P49790 1475 aaKnown RBP17.25■□□□□ 0.35
NUP54-202ENST00000502850 MIER1Q8N108 512 aa17.25■□□□□ 0.35
NUP54-202ENST00000502850 CDK11AQ9UQ88 783 aaPredicted RBP17.25■□□□□ 0.35
NUP54-202ENST00000502850 KIF13AQ9H1H9 1805 aa17.25■□□□□ 0.35
NUP54-202ENST00000502850 ADCY10Q96PN6 1610 aa17.24■□□□□ 0.35
NUP54-202ENST00000502850 NEUROD1Q13562 356 aa17.24■□□□□ 0.35
NUP54-202ENST00000502850 PTPRGP23470 1445 aa17.23■□□□□ 0.35
NUP54-202ENST00000502850 DNMT1P26358 1616 aaKnown RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms