RNA–Protein interactions for RNA: ENST00000502527.2

VCAN-204, Transcript of versican, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCAN, Length 2,087 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-204ENST00000502527 EFCAB5A4FU69 1503 aa24.44■■□□□ 1.5
VCAN-204ENST00000502527 SCAF1Q9H7N4 1312 aaKnown RBP24.44■■□□□ 1.5
VCAN-204ENST00000502527 WDR97A6NE52 1622 aa24.39■■□□□ 1.5
VCAN-204ENST00000502527 ACIN1Q9UKV3 1341 aaKnown RBP24.39■■□□□ 1.49
VCAN-204ENST00000502527 P3H3Q8IVL6 736 aa24.38■■□□□ 1.49
VCAN-204ENST00000502527 PCF11O94913 1555 aaKnown RBP24.38■■□□□ 1.49
VCAN-204ENST00000502527 CENPBP07199 599 aaPredicted RBP24.37■■□□□ 1.49
VCAN-204ENST00000502527 CFAP43Q8NDM7 1665 aa24.37■■□□□ 1.49
VCAN-204ENST00000502527 FHOD3Q2V2M9 1422 aa24.36■■□□□ 1.49
VCAN-204ENST00000502527 FYCO1Q9BQS8 1478 aa24.35■■□□□ 1.49
VCAN-204ENST00000502527 AQRO60306 1485 aaKnown RBP eCLIP24.35■■□□□ 1.49
VCAN-204ENST00000502527 CTTNBP2Q8WZ74 1663 aa24.34■■□□□ 1.49
VCAN-204ENST00000502527 CASKIN1Q8WXD9 1431 aa24.33■■□□□ 1.49
VCAN-204ENST00000502527 ITGAEP38570 1179 aa24.33■■□□□ 1.49
VCAN-204ENST00000502527 ABCA5Q8WWZ7 1642 aa24.33■■□□□ 1.48
VCAN-204ENST00000502527 PHLDB1Q86UU1 1377 aa24.32■■□□□ 1.48
VCAN-204ENST00000502527 TDRD9Q8NDG6 1382 aaKnown RBP24.31■■□□□ 1.48
VCAN-204ENST00000502527 GAPVD1Q14C86 1478 aa24.31■■□□□ 1.48
VCAN-204ENST00000502527 NEUROD1Q13562 356 aa24.3■■□□□ 1.48
VCAN-204ENST00000502527 ATP1B4Q9UN42 357 aaPredicted RBP24.29■■□□□ 1.48
VCAN-204ENST00000502527 FMN1Q68DA7 1419 aa24.28■■□□□ 1.48
VCAN-204ENST00000502527 RAB3GAP2Q9H2M9 1393 aa24.26■■□□□ 1.47
VCAN-204ENST00000502527 DNAJC5BQ9UF47 199 aa24.26■■□□□ 1.47
VCAN-204ENST00000502527 SETD5Q9C0A6 1442 aa24.23■■□□□ 1.47
VCAN-204ENST00000502527 KIF21AQ7Z4S6 1674 aa24.22■■□□□ 1.47
VCAN-204ENST00000502527 FAM50AQ14320 339 aaKnown RBP24.2■■□□□ 1.47
VCAN-204ENST00000502527 MIER1Q8N108 512 aa24.2■■□□□ 1.46
VCAN-204ENST00000502527 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.18■■□□□ 1.46
VCAN-204ENST00000502527 SAMD9Q5K651 1589 aa24.17■■□□□ 1.46
VCAN-204ENST00000502527 SNAPC4Q5SXM2 1469 aa24.17■■□□□ 1.46
VCAN-204ENST00000502527 TARBP1Q13395 1621 aaKnown RBP24.16■■□□□ 1.46
VCAN-204ENST00000502527 MAPKBP1O60336 1514 aa24.11■■□□□ 1.45
VCAN-204ENST00000502527 MTUS2Q5JR59 1369 aa24.08■■□□□ 1.45
VCAN-204ENST00000502527 THOC2Q8NI27 1593 aaKnown RBP24.07■■□□□ 1.44
VCAN-204ENST00000502527 FGD6Q6ZV73 1430 aa24.06■■□□□ 1.44
VCAN-204ENST00000502527 GRIN2BQ13224 1484 aa24.06■■□□□ 1.44
VCAN-204ENST00000502527 MRC2Q9UBG0 1479 aa24.04■■□□□ 1.44
VCAN-204ENST00000502527 GTF3C3Q9Y5Q9 886 aa24.04■■□□□ 1.44
VCAN-204ENST00000502527 YTHDC1Q96MU7 727 aaKnown RBP24.03■■□□□ 1.44
VCAN-204ENST00000502527 PBRM1Q86U86 1689 aa24■■□□□ 1.43
VCAN-204ENST00000502527 NCOA2Q15596 1464 aa23.96■■□□□ 1.43
VCAN-204ENST00000502527 LRRIQ1Q96JM4 1722 aa23.96■■□□□ 1.43
VCAN-204ENST00000502527 ADAMTS12P58397 1594 aa23.96■■□□□ 1.43
VCAN-204ENST00000502527 EHBP1L1Q8N3D4 1523 aa23.96■■□□□ 1.43
VCAN-204ENST00000502527 TIMELESSQ9UNS1 1208 aa23.95■■□□□ 1.42
VCAN-204ENST00000502527 CCDC18Q5T9S5 1454 aa23.94■■□□□ 1.42
VCAN-204ENST00000502527 MYOM3Q5VTT5 1437 aa23.94■■□□□ 1.42
VCAN-204ENST00000502527 IQGAP2Q13576 1575 aa23.94■■□□□ 1.42
VCAN-204ENST00000502527 SUPT6HQ7KZ85 1726 aaKnown RBP23.92■■□□□ 1.42
VCAN-204ENST00000502527 IFT140Q96RY7 1462 aa23.9■■□□□ 1.42
VCAN-204ENST00000502527 SIN3AQ96ST3 1273 aa23.88■■□□□ 1.41
VCAN-204ENST00000502527 HFM1A2PYH4 1435 aa23.88■■□□□ 1.41
VCAN-204ENST00000502527 HECW1Q76N89 1606 aa23.87■■□□□ 1.41
VCAN-204ENST00000502527 UGGT2Q9NYU1 1516 aa23.86■■□□□ 1.41
VCAN-204ENST00000502527 PELP1Q8IZL8 1130 aaKnown RBP23.85■■□□□ 1.41
VCAN-204ENST00000502527 ARHGEF11O15085 1522 aa23.85■■□□□ 1.41
VCAN-204ENST00000502527 PTPRKQ15262 1439 aa23.85■■□□□ 1.41
VCAN-204ENST00000502527 WDR62O43379 1518 aa23.85■■□□□ 1.41
VCAN-204ENST00000502527 MAGI3Q5TCQ9 1506 aa23.82■■□□□ 1.4
VCAN-204ENST00000502527 PTPN23Q9H3S7 1636 aa23.81■■□□□ 1.4
VCAN-204ENST00000502527 UACAQ9BZF9 1416 aa23.81■■□□□ 1.4
VCAN-204ENST00000502527 EPRSP07814 1512 aaKnown RBP23.8■■□□□ 1.4
VCAN-204ENST00000502527 ZNF608Q9ULD9 1512 aaPredicted RBP23.8■■□□□ 1.4
VCAN-204ENST00000502527 NAIPQ13075 1403 aa23.78■■□□□ 1.4
VCAN-204ENST00000502527 TCOF1Q13428 1488 aaKnown RBP23.76■■□□□ 1.39
VCAN-204ENST00000502527 KIAA0586Q9BVV6 1533 aa23.75■■□□□ 1.39
VCAN-204ENST00000502527 PPP1R15AO75807 674 aaPredicted RBP23.75■■□□□ 1.39
VCAN-204ENST00000502527 MIA2Q96PC5 1412 aa23.71■■□□□ 1.39
VCAN-204ENST00000502527 CDK13Q14004 1512 aaKnown RBP23.7■■□□□ 1.38
VCAN-204ENST00000502527 TONSLQ96HA7 1378 aa23.69■■□□□ 1.38
VCAN-204ENST00000502527 GRIN2AQ12879 1464 aa23.68■■□□□ 1.38
VCAN-204ENST00000502527 KIAA0556O60303 1618 aa23.67■■□□□ 1.38
VCAN-204ENST00000502527 AKNAQ7Z591 1439 aa23.66■■□□□ 1.38
VCAN-204ENST00000502527 DISP1Q96F81 1524 aa23.66■■□□□ 1.38
VCAN-204ENST00000502527 EIF4G3O43432 1585 aaKnown RBP23.66■■□□□ 1.38
VCAN-204ENST00000502527 ERCC6Q03468 1493 aa23.65■■□□□ 1.38
VCAN-204ENST00000502527 RRP7BPQ9NSQ0 103 aa23.61■■□□□ 1.37
VCAN-204ENST00000502527 MAGI1Q96QZ7 1491 aaPredicted RBP23.61■■□□□ 1.37
VCAN-204ENST00000502527 GCC2Q8IWJ2 1684 aa23.6■■□□□ 1.37
VCAN-204ENST00000502527 ARID3CA6NKF2 412 aa23.6■■□□□ 1.37
VCAN-204ENST00000502527 CHIC2Q9UKJ5 165 aa23.6■■□□□ 1.37
VCAN-204ENST00000502527 DDX10Q13206 875 aaKnown RBP23.58■■□□□ 1.36
VCAN-204ENST00000502527 NUP153P49790 1475 aaKnown RBP23.57■■□□□ 1.36
VCAN-204ENST00000502527 CDK11AQ9UQ88 783 aaPredicted RBP23.57■■□□□ 1.36
VCAN-204ENST00000502527 RAPGEF6Q8TEU7 1601 aa23.56■■□□□ 1.36
VCAN-204ENST00000502527 CHMP7Q8WUX9 453 aaPredicted RBP23.55■■□□□ 1.36
VCAN-204ENST00000502527 SYNJ2O15056 1496 aa23.54■■□□□ 1.36
VCAN-204ENST00000502527 TRIM52Q96A61 297 aa23.52■■□□□ 1.35
VCAN-204ENST00000502527 ROCK1Q13464 1354 aa23.5■■□□□ 1.35
VCAN-204ENST00000502527 DAPK1P53355 1430 aa23.49■■□□□ 1.35
VCAN-204ENST00000502527 CEP170Q5SW79 1584 aa23.48■■□□□ 1.35
VCAN-204ENST00000502527 HIRIP3Q9BW71 556 aaPredicted RBP23.47■■□□□ 1.35
VCAN-204ENST00000502527 DENND4BO75064 1496 aaPredicted RBP23.46■■□□□ 1.35
VCAN-204ENST00000502527 KDM6BO15054 1643 aa23.46■■□□□ 1.35
VCAN-204ENST00000502527 KDM5BQ9UGL1 1544 aa23.46■■□□□ 1.35
VCAN-204ENST00000502527 CARMIL2Q6F5E8 1435 aa23.45■■□□□ 1.34
VCAN-204ENST00000502527 MPHOSPH9Q99550 1183 aa23.45■■□□□ 1.34
VCAN-204ENST00000502527 ABCC5O15440 1437 aa23.44■■□□□ 1.34
VCAN-204ENST00000502527 TROQ12816 1431 aaPredicted RBP23.44■■□□□ 1.34
VCAN-204ENST00000502527 DNMT1P26358 1616 aaKnown RBP23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms