RNA–Protein interactions for RNA: ENST00000495749.1

TM9SF4-207, Transcript of transmembrane 9 superfamily member 4, humanhuman

TSL 2

Gene TM9SF4, Length 3,023 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-207ENST00000495749 ERCC6Q03468 1493 aa13.46□□□□□ -0.25
TM9SF4-207ENST00000495749 FAM50AQ14320 339 aaKnown RBP13.45□□□□□ -0.26
TM9SF4-207ENST00000495749 POLA1P09884 1462 aaPredicted RBP13.44□□□□□ -0.26
TM9SF4-207ENST00000495749 ARHGAP35Q9NRY4 1499 aa13.44□□□□□ -0.26
TM9SF4-207ENST00000495749 TOPBP1Q92547 1522 aa13.43□□□□□ -0.26
TM9SF4-207ENST00000495749 ERICH3Q5RHP9 1530 aa13.41□□□□□ -0.26
TM9SF4-207ENST00000495749 MIER1Q8N108 512 aa13.4□□□□□ -0.26
TM9SF4-207ENST00000495749 FHOD3Q2V2M9 1422 aa13.39□□□□□ -0.27
TM9SF4-207ENST00000495749 URB2Q14146 1524 aaKnown RBP13.39□□□□□ -0.27
TM9SF4-207ENST00000495749 WDR62O43379 1518 aa13.37□□□□□ -0.27
TM9SF4-207ENST00000495749 FBLN2P98095 1184 aa13.37□□□□□ -0.27
TM9SF4-207ENST00000495749 MRC2Q9UBG0 1479 aa13.37□□□□□ -0.27
TM9SF4-207ENST00000495749 AQRO60306 1485 aaKnown RBP eCLIP13.33□□□□□ -0.281e-8■■■■■ 28.5
TM9SF4-207ENST00000495749 DNMBPQ6XZF7 1577 aa13.32□□□□□ -0.28
TM9SF4-207ENST00000495749 ABCA10Q8WWZ4 1543 aa13.29□□□□□ -0.28
TM9SF4-207ENST00000495749 CCNB3Q8WWL7 1395 aa13.29□□□□□ -0.28
TM9SF4-207ENST00000495749 GAPVD1Q14C86 1478 aa13.28□□□□□ -0.28
TM9SF4-207ENST00000495749 PHLDB1Q86UU1 1377 aa13.26□□□□□ -0.29
TM9SF4-207ENST00000495749 SIN3AQ96ST3 1273 aa13.22□□□□□ -0.29
TM9SF4-207ENST00000495749 CHIC2Q9UKJ5 165 aa13.22□□□□□ -0.29
TM9SF4-207ENST00000495749 DHX57Q6P158 1386 aaKnown RBP13.21□□□□□ -0.29
TM9SF4-207ENST00000495749 MTUS2Q5JR59 1369 aa13.2□□□□□ -0.3
TM9SF4-207ENST00000495749 ZNF608Q9ULD9 1512 aaPredicted RBP13.2□□□□□ -0.3
TM9SF4-207ENST00000495749 FHAD1B1AJZ9 1412 aa13.19□□□□□ -0.3
TM9SF4-207ENST00000495749 RAB3GAP2Q9H2M9 1393 aa13.18□□□□□ -0.3
TM9SF4-207ENST00000495749 LRRC9Q6ZRR7 1453 aa13.18□□□□□ -0.3
TM9SF4-207ENST00000495749 CHMP7Q8WUX9 453 aaPredicted RBP13.17□□□□□ -0.3
TM9SF4-207ENST00000495749 HIRIP3Q9BW71 556 aaPredicted RBP13.17□□□□□ -0.3
TM9SF4-207ENST00000495749 CLSPNQ9HAW4 1339 aa13.17□□□□□ -0.3
TM9SF4-207ENST00000495749 RRBP1Q9P2E9 1410 aaKnown RBP13.16□□□□□ -0.3
TM9SF4-207ENST00000495749 PCF11O94913 1555 aaKnown RBP13.15□□□□□ -0.3
TM9SF4-207ENST00000495749 RRP7BPQ9NSQ0 103 aa13.14□□□□□ -0.31
TM9SF4-207ENST00000495749 TIAM1Q13009 1591 aa13.14□□□□□ -0.31
TM9SF4-207ENST00000495749 TARBP1Q13395 1621 aaKnown RBP13.14□□□□□ -0.31
TM9SF4-207ENST00000495749 IFT140Q96RY7 1462 aa13.12□□□□□ -0.31
TM9SF4-207ENST00000495749 WDR97A6NE52 1622 aa13.1□□□□□ -0.31
TM9SF4-207ENST00000495749 FMN1Q68DA7 1419 aa13.09□□□□□ -0.31
TM9SF4-207ENST00000495749 CASKIN1Q8WXD9 1431 aa13.09□□□□□ -0.31
TM9SF4-207ENST00000495749 SETD5Q9C0A6 1442 aa13.07□□□□□ -0.32
TM9SF4-207ENST00000495749 TRIM52Q96A61 297 aa13.07□□□□□ -0.32
TM9SF4-207ENST00000495749 ZNF777Q9ULD5 760 aaPredicted RBP13.07□□□□□ -0.32
TM9SF4-207ENST00000495749 MYT1Q01538 1121 aa13.06□□□□□ -0.32
TM9SF4-207ENST00000495749 ABCA5Q8WWZ7 1642 aa13.05□□□□□ -0.32
TM9SF4-207ENST00000495749 EIF4G3O43432 1585 aaKnown RBP13.04□□□□□ -0.32
TM9SF4-207ENST00000495749 CUL7Q14999 1698 aa13.04□□□□□ -0.32
TM9SF4-207ENST00000495749 ZNF644Q9H582 1327 aaPredicted RBP13.04□□□□□ -0.32
TM9SF4-207ENST00000495749 GRIN2BQ13224 1484 aa13.04□□□□□ -0.32
TM9SF4-207ENST00000495749 FOXD1Q16676 465 aa13.03□□□□□ -0.32
TM9SF4-207ENST00000495749 SNAPC4Q5SXM2 1469 aa13.03□□□□□ -0.32
TM9SF4-207ENST00000495749 FYCO1Q9BQS8 1478 aa13.03□□□□□ -0.32
TM9SF4-207ENST00000495749 SUPT16HQ9Y5B9 1047 aaKnown RBP13.01□□□□□ -0.33
TM9SF4-207ENST00000495749 PTPRKQ15262 1439 aa13.01□□□□□ -0.33
TM9SF4-207ENST00000495749 FGD6Q6ZV73 1430 aa13□□□□□ -0.33
TM9SF4-207ENST00000495749 JPH4Q96JJ6 628 aa13□□□□□ -0.33
TM9SF4-207ENST00000495749 EFCAB5A4FU69 1503 aa13□□□□□ -0.33
TM9SF4-207ENST00000495749 CDK13Q14004 1512 aaKnown RBP13□□□□□ -0.33
TM9SF4-207ENST00000495749 NCOA2Q15596 1464 aa12.99□□□□□ -0.33
TM9SF4-207ENST00000495749 DDX10Q13206 875 aaKnown RBP12.97□□□□□ -0.33
TM9SF4-207ENST00000495749 CTTNBP2Q8WZ74 1663 aa12.97□□□□□ -0.33
TM9SF4-207ENST00000495749 KCNH8Q96L42 1107 aa12.96□□□□□ -0.33
TM9SF4-207ENST00000495749 MAP3K1Q13233 1512 aa12.96□□□□□ -0.34
TM9SF4-207ENST00000495749 PBRM1Q86U86 1689 aa12.95□□□□□ -0.34
TM9SF4-207ENST00000495749 MAGI3Q5TCQ9 1506 aa12.94□□□□□ -0.34
TM9SF4-207ENST00000495749 IQGAP2Q13576 1575 aa12.93□□□□□ -0.34
TM9SF4-207ENST00000495749 MYOM3Q5VTT5 1437 aa12.93□□□□□ -0.34
TM9SF4-207ENST00000495749 MAPKBP1O60336 1514 aa12.92□□□□□ -0.34
TM9SF4-207ENST00000495749 ADAMTS12P58397 1594 aa12.91□□□□□ -0.34
TM9SF4-207ENST00000495749 PRKCSHP14314 528 aaPredicted RBP12.91□□□□□ -0.34
TM9SF4-207ENST00000495749 EPRSP07814 1512 aaKnown RBP12.91□□□□□ -0.34
TM9SF4-207ENST00000495749 CFDP1Q9UEE9 299 aaPredicted RBP12.9□□□□□ -0.34
TM9SF4-207ENST00000495749 CDK11AQ9UQ88 783 aaPredicted RBP12.9□□□□□ -0.34
TM9SF4-207ENST00000495749 GRIN2AQ12879 1464 aa12.9□□□□□ -0.34
TM9SF4-207ENST00000495749 SAMD9Q5K651 1589 aa12.9□□□□□ -0.34
TM9SF4-207ENST00000495749 PLB1Q6P1J6 1458 aa12.9□□□□□ -0.34
TM9SF4-207ENST00000495749 PRG4Q92954 1404 aaPredicted RBP12.89□□□□□ -0.35
TM9SF4-207ENST00000495749 CFAP43Q8NDM7 1665 aa12.89□□□□□ -0.35
TM9SF4-207ENST00000495749 TONSLQ96HA7 1378 aa12.89□□□□□ -0.35
TM9SF4-207ENST00000495749 CNGB1Q14028 1251 aaPredicted RBP12.88□□□□□ -0.35
TM9SF4-207ENST00000495749 KIAA0586Q9BVV6 1533 aa12.88□□□□□ -0.35
TM9SF4-207ENST00000495749 MAGI1Q96QZ7 1491 aaPredicted RBP12.88□□□□□ -0.35
TM9SF4-207ENST00000495749 PPP1R15AO75807 674 aaPredicted RBP12.88□□□□□ -0.35
TM9SF4-207ENST00000495749 CCDC18Q5T9S5 1454 aa12.88□□□□□ -0.35
TM9SF4-207ENST00000495749 CHD1O14646 1710 aa12.86□□□□□ -0.35
TM9SF4-207ENST00000495749 DISP1Q96F81 1524 aa12.86□□□□□ -0.35
TM9SF4-207ENST00000495749 LRRIQ1Q96JM4 1722 aa12.86□□□□□ -0.35
TM9SF4-207ENST00000495749 NAIPQ13075 1403 aa12.85□□□□□ -0.35
TM9SF4-207ENST00000495749 PLEKHD1A6NEE1 506 aa12.85□□□□□ -0.35
TM9SF4-207ENST00000495749 ZNF326Q5BKZ1 582 aaKnown RBP12.85□□□□□ -0.35
TM9SF4-207ENST00000495749 BCANQ96GW7 911 aa12.84□□□□□ -0.35
TM9SF4-207ENST00000495749 MPHOSPH9Q99550 1183 aa12.84□□□□□ -0.35
TM9SF4-207ENST00000495749 TSHZ2Q9NRE2 1034 aa12.83□□□□□ -0.35
TM9SF4-207ENST00000495749 SLC4A1APQ9BWU0 796 aaKnown RBP12.83□□□□□ -0.36
TM9SF4-207ENST00000495749 NUP153P49790 1475 aaKnown RBP12.82□□□□□ -0.36
TM9SF4-207ENST00000495749 SYNJ2O15056 1496 aa12.81□□□□□ -0.36
TM9SF4-207ENST00000495749 HNRNPMP52272 730 aaKnown RBP eCLIP12.81□□□□□ -0.36
TM9SF4-207ENST00000495749 HFM1A2PYH4 1435 aa12.81□□□□□ -0.36
TM9SF4-207ENST00000495749 EHBP1L1Q8N3D4 1523 aa12.8□□□□□ -0.36
TM9SF4-207ENST00000495749 SUPT6HQ7KZ85 1726 aaKnown RBP12.79□□□□□ -0.36
TM9SF4-207ENST00000495749 UGGT2Q9NYU1 1516 aa12.79□□□□□ -0.36
TM9SF4-207ENST00000495749 POLR3GLQ9BT43 218 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms