RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 FHAD1B1AJZ9 1412 aa16.49■□□□□ 0.23
CHMP3-209ENST00000494623 URB2Q14146 1524 aaKnown RBP16.48■□□□□ 0.23
CHMP3-209ENST00000494623 LAMC3Q9Y6N6 1575 aa16.48■□□□□ 0.23
CHMP3-209ENST00000494623 TDRD9Q8NDG6 1382 aaKnown RBP16.47■□□□□ 0.23
CHMP3-209ENST00000494623 FHOD3Q2V2M9 1422 aa16.47■□□□□ 0.23
CHMP3-209ENST00000494623 MAP3K1Q13233 1512 aa16.47■□□□□ 0.23
CHMP3-209ENST00000494623 CENPBP07199 599 aaPredicted RBP16.47■□□□□ 0.23
CHMP3-209ENST00000494623 LRRC9Q6ZRR7 1453 aa16.47■□□□□ 0.23
CHMP3-209ENST00000494623 MIER1Q8N108 512 aa16.45■□□□□ 0.22
CHMP3-209ENST00000494623 FAM50AQ14320 339 aaKnown RBP16.44■□□□□ 0.22
CHMP3-209ENST00000494623 PDS5BQ9NTI5 1447 aa16.44■□□□□ 0.22
CHMP3-209ENST00000494623 PHLDB1Q86UU1 1377 aa16.43■□□□□ 0.22
CHMP3-209ENST00000494623 PCF11O94913 1555 aaKnown RBP16.41■□□□□ 0.22
CHMP3-209ENST00000494623 CUL7Q14999 1698 aa16.41■□□□□ 0.22
CHMP3-209ENST00000494623 YTHDC1Q96MU7 727 aaKnown RBP16.4■□□□□ 0.22
CHMP3-209ENST00000494623 RAB3GAP2Q9H2M9 1393 aa16.4■□□□□ 0.22
CHMP3-209ENST00000494623 GAPVD1Q14C86 1478 aa16.37■□□□□ 0.21
CHMP3-209ENST00000494623 EFCAB5A4FU69 1503 aa16.36■□□□□ 0.21
CHMP3-209ENST00000494623 CASKIN1Q8WXD9 1431 aa16.36■□□□□ 0.21
CHMP3-209ENST00000494623 SETD5Q9C0A6 1442 aa16.34■□□□□ 0.21
CHMP3-209ENST00000494623 WDR97A6NE52 1622 aa16.34■□□□□ 0.21
CHMP3-209ENST00000494623 FYCO1Q9BQS8 1478 aa16.34■□□□□ 0.21
CHMP3-209ENST00000494623 GTF3C3Q9Y5Q9 886 aa16.34■□□□□ 0.21
CHMP3-209ENST00000494623 CTTNBP2Q8WZ74 1663 aa16.34■□□□□ 0.21
CHMP3-209ENST00000494623 CFAP43Q8NDM7 1665 aa16.33■□□□□ 0.2
CHMP3-209ENST00000494623 FMN1Q68DA7 1419 aa16.32■□□□□ 0.2
CHMP3-209ENST00000494623 ABCA5Q8WWZ7 1642 aa16.32■□□□□ 0.2
CHMP3-209ENST00000494623 KIF21AQ7Z4S6 1674 aa16.31■□□□□ 0.2
CHMP3-209ENST00000494623 AQRO60306 1485 aaKnown RBP eCLIP16.31■□□□□ 0.2
CHMP3-209ENST00000494623 MTUS2Q5JR59 1369 aa16.27■□□□□ 0.19
CHMP3-209ENST00000494623 SIN3AQ96ST3 1273 aa16.25■□□□□ 0.19
CHMP3-209ENST00000494623 SNAPC4Q5SXM2 1469 aa16.25■□□□□ 0.19
CHMP3-209ENST00000494623 MAPKBP1O60336 1514 aa16.25■□□□□ 0.19
CHMP3-209ENST00000494623 TARBP1Q13395 1621 aaKnown RBP16.23■□□□□ 0.19
CHMP3-209ENST00000494623 SAMD9Q5K651 1589 aa16.22■□□□□ 0.19
CHMP3-209ENST00000494623 FGD6Q6ZV73 1430 aa16.2■□□□□ 0.18
CHMP3-209ENST00000494623 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.2■□□□□ 0.18
CHMP3-209ENST00000494623 GRIN2BQ13224 1484 aa16.17■□□□□ 0.18
CHMP3-209ENST00000494623 PELP1Q8IZL8 1130 aaKnown RBP16.17■□□□□ 0.18
CHMP3-209ENST00000494623 MRC2Q9UBG0 1479 aa16.16■□□□□ 0.18
CHMP3-209ENST00000494623 NCOA2Q15596 1464 aa16.15■□□□□ 0.18
CHMP3-209ENST00000494623 LRRIQ1Q96JM4 1722 aa16.14■□□□□ 0.17
CHMP3-209ENST00000494623 ARID3CA6NKF2 412 aa16.13■□□□□ 0.17
CHMP3-209ENST00000494623 PTPRKQ15262 1439 aa16.13■□□□□ 0.17
CHMP3-209ENST00000494623 PBRM1Q86U86 1689 aa16.12■□□□□ 0.17
CHMP3-209ENST00000494623 MYOM3Q5VTT5 1437 aa16.11■□□□□ 0.17
CHMP3-209ENST00000494623 ZNF608Q9ULD9 1512 aaPredicted RBP16.09■□□□□ 0.17
CHMP3-209ENST00000494623 TIMELESSQ9UNS1 1208 aa16.09■□□□□ 0.17
CHMP3-209ENST00000494623 IQGAP2Q13576 1575 aa16.08■□□□□ 0.17
CHMP3-209ENST00000494623 ADAMTS12P58397 1594 aa16.08■□□□□ 0.16
CHMP3-209ENST00000494623 THOC2Q8NI27 1593 aaKnown RBP16.08■□□□□ 0.16
CHMP3-209ENST00000494623 SUPT6HQ7KZ85 1726 aaKnown RBP16.07■□□□□ 0.16
CHMP3-209ENST00000494623 EHBP1L1Q8N3D4 1523 aa16.07■□□□□ 0.16
CHMP3-209ENST00000494623 CCDC18Q5T9S5 1454 aa16.07■□□□□ 0.16
CHMP3-209ENST00000494623 PPP1R15AO75807 674 aaPredicted RBP16.06■□□□□ 0.16
CHMP3-209ENST00000494623 CHIC2Q9UKJ5 165 aa16.06■□□□□ 0.16
CHMP3-209ENST00000494623 MAGI3Q5TCQ9 1506 aa16.06■□□□□ 0.16
CHMP3-209ENST00000494623 HFM1A2PYH4 1435 aa16.06■□□□□ 0.16
CHMP3-209ENST00000494623 IFT140Q96RY7 1462 aa16.06■□□□□ 0.16
CHMP3-209ENST00000494623 RRP7BPQ9NSQ0 103 aa16.05■□□□□ 0.16
CHMP3-209ENST00000494623 HIRIP3Q9BW71 556 aaPredicted RBP16.04■□□□□ 0.16
CHMP3-209ENST00000494623 UGGT2Q9NYU1 1516 aa16.03■□□□□ 0.16
CHMP3-209ENST00000494623 DDX10Q13206 875 aaKnown RBP16.03■□□□□ 0.16
CHMP3-209ENST00000494623 NAIPQ13075 1403 aa16.03■□□□□ 0.16
CHMP3-209ENST00000494623 EPRSP07814 1512 aaKnown RBP16.03■□□□□ 0.16
CHMP3-209ENST00000494623 PTPN23Q9H3S7 1636 aa16.02■□□□□ 0.16
CHMP3-209ENST00000494623 HECW1Q76N89 1606 aa16.02■□□□□ 0.15
CHMP3-209ENST00000494623 UACAQ9BZF9 1416 aa16.02■□□□□ 0.15
CHMP3-209ENST00000494623 TONSLQ96HA7 1378 aa16.01■□□□□ 0.15
CHMP3-209ENST00000494623 CDK13Q14004 1512 aaKnown RBP16.01■□□□□ 0.15
CHMP3-209ENST00000494623 ARHGEF11O15085 1522 aa16■□□□□ 0.15
CHMP3-209ENST00000494623 WDR62O43379 1518 aa15.99■□□□□ 0.15
CHMP3-209ENST00000494623 TRIM52Q96A61 297 aa15.98■□□□□ 0.15
CHMP3-209ENST00000494623 KCNH8Q96L42 1107 aa15.97■□□□□ 0.15
CHMP3-209ENST00000494623 ERCC6Q03468 1493 aa15.97■□□□□ 0.15
CHMP3-209ENST00000494623 KIAA0586Q9BVV6 1533 aa15.97■□□□□ 0.15
CHMP3-209ENST00000494623 FBLN2P98095 1184 aa15.96■□□□□ 0.15
CHMP3-209ENST00000494623 CHMP7Q8WUX9 453 aaPredicted RBP15.96■□□□□ 0.14
CHMP3-209ENST00000494623 TCOF1Q13428 1488 aaKnown RBP15.95■□□□□ 0.14
CHMP3-209ENST00000494623 DISP1Q96F81 1524 aa15.93■□□□□ 0.14
CHMP3-209ENST00000494623 GRIN2AQ12879 1464 aa15.93■□□□□ 0.14
CHMP3-209ENST00000494623 MIA2Q96PC5 1412 aa15.92■□□□□ 0.14
CHMP3-209ENST00000494623 EIF4G3O43432 1585 aaKnown RBP15.91■□□□□ 0.14
CHMP3-209ENST00000494623 KIAA0556O60303 1618 aa15.9■□□□□ 0.14
CHMP3-209ENST00000494623 CDK11AQ9UQ88 783 aaPredicted RBP15.9■□□□□ 0.14
CHMP3-209ENST00000494623 ZNF644Q9H582 1327 aaPredicted RBP15.89■□□□□ 0.13
CHMP3-209ENST00000494623 MPHOSPH9Q99550 1183 aa15.88■□□□□ 0.13
CHMP3-209ENST00000494623 NUP153P49790 1475 aaKnown RBP15.87■□□□□ 0.13
CHMP3-209ENST00000494623 AEBP2Q6ZN18 517 aaPredicted RBP15.86■□□□□ 0.13
CHMP3-209ENST00000494623 FOXD1Q16676 465 aa15.86■□□□□ 0.13
CHMP3-209ENST00000494623 KDM6BO15054 1643 aa15.86■□□□□ 0.13
CHMP3-209ENST00000494623 MAGI1Q96QZ7 1491 aaPredicted RBP15.84■□□□□ 0.13
CHMP3-209ENST00000494623 JPH4Q96JJ6 628 aa15.84■□□□□ 0.13
CHMP3-209ENST00000494623 RAPGEF6Q8TEU7 1601 aa15.84■□□□□ 0.13
CHMP3-209ENST00000494623 ANP32CO43423 234 aa15.83■□□□□ 0.13
CHMP3-209ENST00000494623 AKNAQ7Z591 1439 aa15.83■□□□□ 0.13
CHMP3-209ENST00000494623 SYNJ2O15056 1496 aa15.83■□□□□ 0.12
CHMP3-209ENST00000494623 PRG4Q92954 1404 aaPredicted RBP15.82■□□□□ 0.12
CHMP3-209ENST00000494623 GCC2Q8IWJ2 1684 aa15.82■□□□□ 0.12
CHMP3-209ENST00000494623 DENND4BO75064 1496 aaPredicted RBP15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms