RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ERCC6Q03468 1493 aa15.23■□□□□ 0.03
MSH5-SAPCD1-207ENST00000493662 VPS8Q8N3P4 1428 aa15.22■□□□□ 0.03
MSH5-SAPCD1-207ENST00000493662 FANCD2Q9BXW9 1451 aa15.22■□□□□ 0.03
MSH5-SAPCD1-207ENST00000493662 MIER1Q8N108 512 aa15.19■□□□□ 0.02
MSH5-SAPCD1-207ENST00000493662 KCNH8Q96L42 1107 aa15.19■□□□□ 0.02
MSH5-SAPCD1-207ENST00000493662 FHOD3Q2V2M9 1422 aa15.18■□□□□ 0.02
MSH5-SAPCD1-207ENST00000493662 DDX10Q13206 875 aaKnown RBP15.17■□□□□ 0.02
MSH5-SAPCD1-207ENST00000493662 IGF1RP08069 1367 aa15.16■□□□□ 0.02
MSH5-SAPCD1-207ENST00000493662 SENP3Q9H4L4 574 aaPredicted RBP15.16■□□□□ 0.02
MSH5-SAPCD1-207ENST00000493662 FGD5Q6ZNL6 1462 aa15.16■□□□□ 0.02
MSH5-SAPCD1-207ENST00000493662 CC2D2AQ9P2K1 1620 aa15.14■□□□□ 0.01
MSH5-SAPCD1-207ENST00000493662 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.12■□□□□ 0.017e-7■■□□□ 12.5
MSH5-SAPCD1-207ENST00000493662 SENP3-EIF4A1A0A087X0R7 540 aa15.12■□□□□ 0.01
MSH5-SAPCD1-207ENST00000493662 FOXD1Q16676 465 aa15.1■□□□□ 0.01
MSH5-SAPCD1-207ENST00000493662 PDS5BQ9NTI5 1447 aa15.1■□□□□ 0.01
MSH5-SAPCD1-207ENST00000493662 CDK11AQ9UQ88 783 aaPredicted RBP15.09■□□□□ 0.01
MSH5-SAPCD1-207ENST00000493662 CCNB3Q8WWL7 1395 aa15.09■□□□□ 0.01
MSH5-SAPCD1-207ENST00000493662 CUX1P39880 1505 aa15.08■□□□□ 0
MSH5-SAPCD1-207ENST00000493662 CFTRP13569 1480 aa15.08■□□□□ 0
MSH5-SAPCD1-207ENST00000493662 AQRO60306 1485 aaKnown RBP eCLIP15.05■□□□□ 02e-8■■■■■ 33.7
MSH5-SAPCD1-207ENST00000493662 KDM2AQ9Y2K7 1162 aa15.04■□□□□ -0
MSH5-SAPCD1-207ENST00000493662 CLSPNQ9HAW4 1339 aa15.03■□□□□ -0
MSH5-SAPCD1-207ENST00000493662 TONSLQ96HA7 1378 aa15.03■□□□□ -0
MSH5-SAPCD1-207ENST00000493662 ARAP1Q96P48 1450 aa15.01□□□□□ -0.01
MSH5-SAPCD1-207ENST00000493662 CFDP1Q9UEE9 299 aaPredicted RBP15□□□□□ -0.01
MSH5-SAPCD1-207ENST00000493662 RTL5Q5HYW3 569 aaPredicted RBP14.99□□□□□ -0.01
MSH5-SAPCD1-207ENST00000493662 SLC4A1APQ9BWU0 796 aaKnown RBP14.99□□□□□ -0.01
MSH5-SAPCD1-207ENST00000493662 KIF21BO75037 1637 aa14.97□□□□□ -0.01
MSH5-SAPCD1-207ENST00000493662 PLEKHD1A6NEE1 506 aa14.97□□□□□ -0.01
MSH5-SAPCD1-207ENST00000493662 RAB3GAP2Q9H2M9 1393 aa14.95□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 RGL3Q3MIN7 710 aa14.95□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 PLPPR3Q6T4P5 718 aa14.94□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 ANP32CO43423 234 aa14.93□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 FHAD1B1AJZ9 1412 aa14.93□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 TSPY4P0CV99 314 aa14.92□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 TSPY10P0CW01 314 aa14.92□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 FKBP8Q14318 412 aa14.92□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 TOP2BQ02880 1626 aa14.92□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 HMGXB3Q12766 1538 aa14.91□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 POLA1P09884 1462 aaPredicted RBP14.91□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 GAPVD1Q14C86 1478 aa14.91□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 PRXQ9BXM0 1461 aa14.9□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 ARHGAP35Q9NRY4 1499 aa14.9□□□□□ -0.02
MSH5-SAPCD1-207ENST00000493662 CHGAP10645 457 aaKnown RBP14.89□□□□□ -0.03
MSH5-SAPCD1-207ENST00000493662 JPH4Q96JJ6 628 aa14.89□□□□□ -0.03
MSH5-SAPCD1-207ENST00000493662 ZNF644Q9H582 1327 aaPredicted RBP14.89□□□□□ -0.03
MSH5-SAPCD1-207ENST00000493662 PHLDB1Q86UU1 1377 aa14.88□□□□□ -0.03
MSH5-SAPCD1-207ENST00000493662 TOPBP1Q92547 1522 aa14.87□□□□□ -0.03
MSH5-SAPCD1-207ENST00000493662 PEG3Q9GZU2 1588 aa14.87□□□□□ -0.03
MSH5-SAPCD1-207ENST00000493662 SUPT16HQ9Y5B9 1047 aaKnown RBP14.87□□□□□ -0.03
MSH5-SAPCD1-207ENST00000493662 SALL2Q9Y467 1007 aaPredicted RBP14.86□□□□□ -0.03
MSH5-SAPCD1-207ENST00000493662 FAM9BQ8IZU0 186 aa14.84□□□□□ -0.03
MSH5-SAPCD1-207ENST00000493662 DHX57Q6P158 1386 aaKnown RBP14.82□□□□□ -0.04
MSH5-SAPCD1-207ENST00000493662 SETD5Q9C0A6 1442 aa14.82□□□□□ -0.04
MSH5-SAPCD1-207ENST00000493662 EIF5BO60841 1220 aaKnown RBP14.8□□□□□ -0.04
MSH5-SAPCD1-207ENST00000493662 HNRNPMP52272 730 aaKnown RBP eCLIP14.8□□□□□ -0.04
MSH5-SAPCD1-207ENST00000493662 TSHZ2Q9NRE2 1034 aa14.8□□□□□ -0.04
MSH5-SAPCD1-207ENST00000493662 FMN1Q68DA7 1419 aa14.79□□□□□ -0.04
MSH5-SAPCD1-207ENST00000493662 NPM1P06748 294 aaKnown RBP eCLIP14.79□□□□□ -0.04
MSH5-SAPCD1-207ENST00000493662 IRX6P78412 446 aaPredicted RBP14.78□□□□□ -0.04
MSH5-SAPCD1-207ENST00000493662 HNRNPUQ00839 825 aaKnown RBP eCLIP14.77□□□□□ -0.05
MSH5-SAPCD1-207ENST00000493662 PRKCSHP14314 528 aaPredicted RBP14.74□□□□□ -0.05
MSH5-SAPCD1-207ENST00000493662 URB2Q14146 1524 aaKnown RBP14.74□□□□□ -0.05
MSH5-SAPCD1-207ENST00000493662 NBR1Q14596 966 aa14.73□□□□□ -0.05
MSH5-SAPCD1-207ENST00000493662 MPHOSPH9Q99550 1183 aa14.72□□□□□ -0.05
MSH5-SAPCD1-207ENST00000493662 PKD2Q13563 968 aa14.71□□□□□ -0.05
MSH5-SAPCD1-207ENST00000493662 ZNF608Q9ULD9 1512 aaPredicted RBP14.71□□□□□ -0.05
MSH5-SAPCD1-207ENST00000493662 EIF4G2P78344 907 aaKnown RBP eCLIP14.71□□□□□ -0.06
MSH5-SAPCD1-207ENST00000493662 LRRC9Q6ZRR7 1453 aa14.69□□□□□ -0.06
MSH5-SAPCD1-207ENST00000493662 ERICH3Q5RHP9 1530 aa14.68□□□□□ -0.06
MSH5-SAPCD1-207ENST00000493662 L3MBTL2Q969R5 705 aa14.67□□□□□ -0.06
MSH5-SAPCD1-207ENST00000493662 DCAF11Q8TEB1 546 aa14.67□□□□□ -0.06
MSH5-SAPCD1-207ENST00000493662 MRS2Q9HD23 443 aa14.65□□□□□ -0.06
MSH5-SAPCD1-207ENST00000493662 RBM19Q9Y4C8 960 aaKnown RBP14.65□□□□□ -0.06
MSH5-SAPCD1-207ENST00000493662 PPP1R15AO75807 674 aaPredicted RBP14.65□□□□□ -0.06
MSH5-SAPCD1-207ENST00000493662 DAXXQ9UER7 740 aaPredicted RBP14.65□□□□□ -0.06
MSH5-SAPCD1-207ENST00000493662 DNMBPQ6XZF7 1577 aa14.64□□□□□ -0.07
MSH5-SAPCD1-207ENST00000493662 CARMIL2Q6F5E8 1435 aa14.64□□□□□ -0.07
MSH5-SAPCD1-207ENST00000493662 HSPA5P11021 654 aaKnown RBP14.64□□□□□ -0.07
MSH5-SAPCD1-207ENST00000493662 CARD11Q9BXL7 1154 aa14.62□□□□□ -0.07
MSH5-SAPCD1-207ENST00000493662 ABCA10Q8WWZ4 1543 aa14.6□□□□□ -0.07
MSH5-SAPCD1-207ENST00000493662 SNAPC4Q5SXM2 1469 aa14.6□□□□□ -0.07
MSH5-SAPCD1-207ENST00000493662 FGD6Q6ZV73 1430 aa14.6□□□□□ -0.07
MSH5-SAPCD1-207ENST00000493662 NUP155O75694 1391 aa14.6□□□□□ -0.07
MSH5-SAPCD1-207ENST00000493662 MRC2Q9UBG0 1479 aa14.6□□□□□ -0.07
MSH5-SAPCD1-207ENST00000493662 DEKP35659 375 aaKnown RBP14.6□□□□□ -0.07
MSH5-SAPCD1-207ENST00000493662 GRIN2BQ13224 1484 aa14.59□□□□□ -0.07
MSH5-SAPCD1-207ENST00000493662 PTPRGP23470 1445 aa14.58□□□□□ -0.07
MSH5-SAPCD1-207ENST00000493662 GGT6Q6P531 493 aa14.58□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 BIVM-ERCC5R4GMW8 1640 aa14.58□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 CDK13Q14004 1512 aaKnown RBP14.58□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 MLECQ14165 292 aa14.58□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 PRDM2Q13029 1718 aa14.57□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 NCOA2Q15596 1464 aa14.57□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 ANP32AP39687 249 aaKnown RBP14.57□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 RTN4Q9NQC3 1192 aaKnown RBP14.57□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 PRG4Q92954 1404 aaPredicted RBP14.57□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 CASKIN1Q8WXD9 1431 aa14.56□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 NUTM2DQ5VT03 806 aaPredicted RBP14.56□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 STAG3Q9UJ98 1225 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms