RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 NUP160Q12769 1436 aa15.48■□□□□ 0.07
USP54-214ENST00000492357 CEP162Q5TB80 1403 aa15.48■□□□□ 0.07
USP54-214ENST00000492357 EFCAB5A4FU69 1503 aa15.47■□□□□ 0.07
USP54-214ENST00000492357 KIAA0586Q9BVV6 1533 aa15.47■□□□□ 0.07
USP54-214ENST00000492357 CHMP7Q8WUX9 453 aaPredicted RBP15.46■□□□□ 0.07
USP54-214ENST00000492357 IQGAP2Q13576 1575 aa15.45■□□□□ 0.06
USP54-214ENST00000492357 CLIP1P30622 1438 aa15.43■□□□□ 0.06
USP54-214ENST00000492357 CHD1O14646 1710 aa15.42■□□□□ 0.06
USP54-214ENST00000492357 UGGT2Q9NYU1 1516 aa15.4■□□□□ 0.06
USP54-214ENST00000492357 CEP170Q5SW79 1584 aa15.4■□□□□ 0.06
USP54-214ENST00000492357 SAMD9Q5K651 1589 aa15.39■□□□□ 0.05
USP54-214ENST00000492357 ARHGAP35Q9NRY4 1499 aa15.34■□□□□ 0.05
USP54-214ENST00000492357 FOXD1Q16676 465 aa15.33■□□□□ 0.04
USP54-214ENST00000492357 CLASP1Q7Z460 1538 aa15.33■□□□□ 0.04
USP54-214ENST00000492357 SHROOM2Q13796 1616 aa15.32■□□□□ 0.04
USP54-214ENST00000492357 EHMT2Q96KQ7 1210 aa15.32■□□□□ 0.04
USP54-214ENST00000492357 FBLN2P98095 1184 aa15.31■□□□□ 0.04
USP54-214ENST00000492357 VPS8Q8N3P4 1428 aa15.31■□□□□ 0.04
USP54-214ENST00000492357 FMN1Q68DA7 1419 aa15.29■□□□□ 0.04
USP54-214ENST00000492357 CARMIL2Q6F5E8 1435 aa15.29■□□□□ 0.04
USP54-214ENST00000492357 ARAP1Q96P48 1450 aa15.28■□□□□ 0.04
USP54-214ENST00000492357 KIAA0556O60303 1618 aa15.28■□□□□ 0.04
USP54-214ENST00000492357 DISP1Q96F81 1524 aa15.25■□□□□ 0.03
USP54-214ENST00000492357 JPH4Q96JJ6 628 aa15.24■□□□□ 0.03
USP54-214ENST00000492357 OSCARQ8IYS5 282 aa15.22■□□□□ 0.03
USP54-214ENST00000492357 MAP3K1Q13233 1512 aa15.22■□□□□ 0.03
USP54-214ENST00000492357 FYCO1Q9BQS8 1478 aa15.21■□□□□ 0.03
USP54-214ENST00000492357 CASKIN1Q8WXD9 1431 aa15.19■□□□□ 0.02
USP54-214ENST00000492357 FHOD3Q2V2M9 1422 aa15.18■□□□□ 0.02
USP54-214ENST00000492357 PRG4Q92954 1404 aaPredicted RBP15.17■□□□□ 0.02
USP54-214ENST00000492357 HECW1Q76N89 1606 aa15.14■□□□□ 0.01
USP54-214ENST00000492357 CCDC18Q5T9S5 1454 aa15.13■□□□□ 0.01
USP54-214ENST00000492357 PCF11O94913 1555 aaKnown RBP15.12■□□□□ 0.01
USP54-214ENST00000492357 RANGAP1P46060 587 aaPredicted RBP15.11■□□□□ 0.01
USP54-214ENST00000492357 CFAP43Q8NDM7 1665 aa15.1■□□□□ 0.01
USP54-214ENST00000492357 APLP2Q06481 763 aa15.1■□□□□ 0.01
USP54-214ENST00000492357 RAPGEF6Q8TEU7 1601 aa15.1■□□□□ 0.01
USP54-214ENST00000492357 PTPRGP23470 1445 aa15.09■□□□□ 0.01
USP54-214ENST00000492357 ABCA8O94911 1581 aa15.08■□□□□ 0
USP54-214ENST00000492357 TIAM1Q13009 1591 aa15.08■□□□□ 0
USP54-214ENST00000492357 P3H3Q8IVL6 736 aa15.06■□□□□ 0
USP54-214ENST00000492357 UHRF1BP1LA0JNW5 1464 aa15.06■□□□□ 0
USP54-214ENST00000492357 EPRSP07814 1512 aaKnown RBP15.02■□□□□ -0
USP54-214ENST00000492357 UACAQ9BZF9 1416 aa15.02■□□□□ -0
USP54-214ENST00000492357 ABCC2Q92887 1545 aa15.02□□□□□ -0.01
USP54-214ENST00000492357 NUP153P49790 1475 aaKnown RBP15.01□□□□□ -0.01
USP54-214ENST00000492357 ERCC6L2Q5T890 1561 aa15.01□□□□□ -0.01
USP54-214ENST00000492357 EHBP1L1Q8N3D4 1523 aa14.99□□□□□ -0.01
USP54-214ENST00000492357 PLB1Q6P1J6 1458 aa14.99□□□□□ -0.01
USP54-214ENST00000492357 LRRC9Q6ZRR7 1453 aa14.99□□□□□ -0.01
USP54-214ENST00000492357 LRRIQ1Q96JM4 1722 aa14.98□□□□□ -0.01
USP54-214ENST00000492357 CDK11AQ9UQ88 783 aaPredicted RBP14.98□□□□□ -0.01
USP54-214ENST00000492357 ARHGEF11O15085 1522 aa14.97□□□□□ -0.01
USP54-214ENST00000492357 KDM5BQ9UGL1 1544 aa14.95□□□□□ -0.02
USP54-214ENST00000492357 MTUS2Q5JR59 1369 aa14.92□□□□□ -0.02
USP54-214ENST00000492357 SUPT6HQ7KZ85 1726 aaKnown RBP14.92□□□□□ -0.02
USP54-214ENST00000492357 ATP10BO94823 1461 aa14.91□□□□□ -0.02
USP54-214ENST00000492357 ADCY10Q96PN6 1610 aa14.91□□□□□ -0.02
USP54-214ENST00000492357 RIMBP3CA6NJZ7 1639 aa14.9□□□□□ -0.02
USP54-214ENST00000492357 RIMBP3BA6NNM3 1639 aa14.9□□□□□ -0.02
USP54-214ENST00000492357 RIMBP3Q9UFD9 1639 aa14.9□□□□□ -0.02
USP54-214ENST00000492357 CDK13Q14004 1512 aaKnown RBP14.9□□□□□ -0.02
USP54-214ENST00000492357 TROQ12816 1431 aaPredicted RBP14.89□□□□□ -0.03
USP54-214ENST00000492357 ADRA2BP18089 450 aa14.88□□□□□ -0.03
USP54-214ENST00000492357 ATP1B4Q9UN42 357 aaPredicted RBP14.88□□□□□ -0.03
USP54-214ENST00000492357 PPP6R1Q9UPN7 881 aa14.87□□□□□ -0.03
USP54-214ENST00000492357 ZCCHC11Q5TAX3 1644 aaKnown RBP14.86□□□□□ -0.03
USP54-214ENST00000492357 TRIM26Q12899 539 aaPredicted RBP14.86□□□□□ -0.03
USP54-214ENST00000492357 KANK4Q5T7N3 995 aaPredicted RBP14.86□□□□□ -0.03
USP54-214ENST00000492357 PLEKHD1A6NEE1 506 aa14.85□□□□□ -0.03
USP54-214ENST00000492357 MAGI3Q5TCQ9 1506 aa14.85□□□□□ -0.03
USP54-214ENST00000492357 KIF14Q15058 1648 aa14.84□□□□□ -0.03
USP54-214ENST00000492357 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.84□□□□□ -0.03
USP54-214ENST00000492357 NCOA2Q15596 1464 aa14.83□□□□□ -0.03
USP54-214ENST00000492357 RRBP1Q9P2E9 1410 aaKnown RBP14.83□□□□□ -0.04
USP54-214ENST00000492357 ITSN2Q9NZM3 1697 aa14.81□□□□□ -0.04
USP54-214ENST00000492357 TTBK1Q5TCY1 1321 aaPredicted RBP14.81□□□□□ -0.04
USP54-214ENST00000492357 MIA2Q96PC5 1412 aa14.81□□□□□ -0.04
USP54-214ENST00000492357 MYOM3Q5VTT5 1437 aa14.8□□□□□ -0.04
USP54-214ENST00000492357 MAPKBP1O60336 1514 aa14.8□□□□□ -0.04
USP54-214ENST00000492357 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.79□□□□□ -0.04
USP54-214ENST00000492357 NPM1P06748 294 aaKnown RBP eCLIP14.79□□□□□ -0.04
USP54-214ENST00000492357 HNRNPUL2Q1KMD3 747 aaKnown RBP14.79□□□□□ -0.04
USP54-214ENST00000492357 WDR7Q9Y4E6 1490 aa14.78□□□□□ -0.04
USP54-214ENST00000492357 ARAP3Q8WWN8 1544 aa14.76□□□□□ -0.05
USP54-214ENST00000492357 ABCC10Q5T3U5 1492 aa14.76□□□□□ -0.05
USP54-214ENST00000492357 FGD6Q6ZV73 1430 aa14.75□□□□□ -0.05
USP54-214ENST00000492357 PHLDB1Q86UU1 1377 aa14.75□□□□□ -0.05
USP54-214ENST00000492357 CCNB3Q8WWL7 1395 aa14.75□□□□□ -0.05
USP54-214ENST00000492357 TCOF1Q13428 1488 aaKnown RBP14.74□□□□□ -0.05
USP54-214ENST00000492357 ABCA9Q8IUA7 1624 aa14.72□□□□□ -0.05
USP54-214ENST00000492357 ASXL2Q76L83 1435 aa14.72□□□□□ -0.05
USP54-214ENST00000492357 PREX2Q70Z35 1606 aa14.71□□□□□ -0.05
USP54-214ENST00000492357 GPATCH8Q9UKJ3 1502 aaKnown RBP14.71□□□□□ -0.06
USP54-214ENST00000492357 CDC42BPAQ5VT25 1732 aa14.7□□□□□ -0.06
USP54-214ENST00000492357 MYO5CQ9NQX4 1742 aa14.7□□□□□ -0.06
USP54-214ENST00000492357 PPARGC1BQ86YN6 1023 aaKnown RBP14.7□□□□□ -0.06
USP54-214ENST00000492357 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.7□□□□□ -0.06
USP54-214ENST00000492357 PTPN23Q9H3S7 1636 aa14.69□□□□□ -0.06
USP54-214ENST00000492357 ARID3CA6NKF2 412 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms