RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 CHIC2Q9UKJ5 165 aa17.37■□□□□ 0.37
SHROOM3-208ENST00000486758 CLSPNQ9HAW4 1339 aa17.35■□□□□ 0.37
SHROOM3-208ENST00000486758 KIF27Q86VH2 1401 aa17.34■□□□□ 0.37
SHROOM3-208ENST00000486758 ANP32CO43423 234 aa17.33■□□□□ 0.36
SHROOM3-208ENST00000486758 SYNJ1O43426 1573 aa17.32■□□□□ 0.36
SHROOM3-208ENST00000486758 RBM19Q9Y4C8 960 aaKnown RBP17.29■□□□□ 0.36
SHROOM3-208ENST00000486758 CUX2O14529 1486 aa17.28■□□□□ 0.36
SHROOM3-208ENST00000486758 CDK11AQ9UQ88 783 aaPredicted RBP17.28■□□□□ 0.36
SHROOM3-208ENST00000486758 PDS5BQ9NTI5 1447 aa17.27■□□□□ 0.36
SHROOM3-208ENST00000486758 ZNF326Q5BKZ1 582 aaKnown RBP17.27■□□□□ 0.36
SHROOM3-208ENST00000486758 DHX57Q6P158 1386 aaKnown RBP17.27■□□□□ 0.36
SHROOM3-208ENST00000486758 SENP3-EIF4A1A0A087X0R7 540 aa17.25■□□□□ 0.35
SHROOM3-208ENST00000486758 OSCARQ8IYS5 282 aa17.25■□□□□ 0.35
SHROOM3-208ENST00000486758 NESP48681 1621 aa17.24■□□□□ 0.35
SHROOM3-208ENST00000486758 HNRNPUQ00839 825 aaKnown RBP eCLIP17.24■□□□□ 0.35
SHROOM3-208ENST00000486758 CCNB3Q8WWL7 1395 aa17.23■□□□□ 0.35
SHROOM3-208ENST00000486758 NBR1Q14596 966 aa17.22■□□□□ 0.35
SHROOM3-208ENST00000486758 RRP7BPQ9NSQ0 103 aa17.22■□□□□ 0.35
SHROOM3-208ENST00000486758 CARMIL1Q5VZK9 1371 aa17.19■□□□□ 0.34
SHROOM3-208ENST00000486758 CYB5RLQ6IPT4 315 aa17.17■□□□□ 0.34
SHROOM3-208ENST00000486758 ZNF777Q9ULD5 760 aaPredicted RBP17.16■□□□□ 0.34
SHROOM3-208ENST00000486758 AEBP2Q6ZN18 517 aaPredicted RBP17.16■□□□□ 0.34
SHROOM3-208ENST00000486758 MTUS2Q5JR59 1369 aa17.15■□□□□ 0.34
SHROOM3-208ENST00000486758 TONSLQ96HA7 1378 aa17.15■□□□□ 0.34
SHROOM3-208ENST00000486758 KIF21BO75037 1637 aa17.15■□□□□ 0.34
SHROOM3-208ENST00000486758 RAB3GAP2Q9H2M9 1393 aa17.13■□□□□ 0.33
SHROOM3-208ENST00000486758 CADPSQ9ULU8 1353 aa17.12■□□□□ 0.33
SHROOM3-208ENST00000486758 ARAP1Q96P48 1450 aa17.08■□□□□ 0.33
SHROOM3-208ENST00000486758 FAM9BQ8IZU0 186 aa17.08■□□□□ 0.32
SHROOM3-208ENST00000486758 TDRD9Q8NDG6 1382 aaKnown RBP17.07■□□□□ 0.32
SHROOM3-208ENST00000486758 FHOD3Q2V2M9 1422 aa17.06■□□□□ 0.32
SHROOM3-208ENST00000486758 CHMP7Q8WUX9 453 aaPredicted RBP17.05■□□□□ 0.32
SHROOM3-208ENST00000486758 RTL5Q5HYW3 569 aaPredicted RBP17.04■□□□□ 0.32
SHROOM3-208ENST00000486758 FOXD1Q16676 465 aa17.03■□□□□ 0.32
SHROOM3-208ENST00000486758 LAMC3Q9Y6N6 1575 aa17.03■□□□□ 0.32
SHROOM3-208ENST00000486758 IGF1RP08069 1367 aa17■□□□□ 0.31
SHROOM3-208ENST00000486758 NPM2Q86SE8 214 aaKnown RBP17■□□□□ 0.31
SHROOM3-208ENST00000486758 B4GALNT3Q6L9W6 998 aa16.99■□□□□ 0.31
SHROOM3-208ENST00000486758 CFTRP13569 1480 aa16.97■□□□□ 0.31
SHROOM3-208ENST00000486758 SETD5Q9C0A6 1442 aa16.97■□□□□ 0.31
SHROOM3-208ENST00000486758 CUX1P39880 1505 aa16.95■□□□□ 0.3
SHROOM3-208ENST00000486758 RAD54L2Q9Y4B4 1467 aa16.95■□□□□ 0.3
SHROOM3-208ENST00000486758 RTN4Q9NQC3 1192 aaKnown RBP16.94■□□□□ 0.3
SHROOM3-208ENST00000486758 FANCD2Q9BXW9 1451 aa16.93■□□□□ 0.3
SHROOM3-208ENST00000486758 PHLDB1Q86UU1 1377 aa16.93■□□□□ 0.3
SHROOM3-208ENST00000486758 ARHGAP35Q9NRY4 1499 aa16.93■□□□□ 0.3
SHROOM3-208ENST00000486758 DEKP35659 375 aaKnown RBP16.92■□□□□ 0.3
SHROOM3-208ENST00000486758 MYT1LQ9UL68 1186 aa16.92■□□□□ 0.3
SHROOM3-208ENST00000486758 FGD5Q6ZNL6 1462 aa16.92■□□□□ 0.3
SHROOM3-208ENST00000486758 PRXQ9BXM0 1461 aa16.92■□□□□ 0.3
SHROOM3-208ENST00000486758 MSH5O43196 834 aa16.91■□□□□ 0.3
SHROOM3-208ENST00000486758 WDR97A6NE52 1622 aa16.91■□□□□ 0.3
SHROOM3-208ENST00000486758 TOP2BQ02880 1626 aa16.9■□□□□ 0.3
SHROOM3-208ENST00000486758 SALL2Q9Y467 1007 aaPredicted RBP16.9■□□□□ 0.3
SHROOM3-208ENST00000486758 FHAD1B1AJZ9 1412 aa16.88■□□□□ 0.29
SHROOM3-208ENST00000486758 KIF21AQ7Z4S6 1674 aa16.88■□□□□ 0.29
SHROOM3-208ENST00000486758 KDM2AQ9Y2K7 1162 aa16.87■□□□□ 0.29
SHROOM3-208ENST00000486758 SLC4A1APQ9BWU0 796 aaKnown RBP16.86■□□□□ 0.29
SHROOM3-208ENST00000486758 MRS2Q9HD23 443 aa16.86■□□□□ 0.29
SHROOM3-208ENST00000486758 ANP32AP39687 249 aaKnown RBP16.85■□□□□ 0.29
SHROOM3-208ENST00000486758 PPP1R15AO75807 674 aaPredicted RBP16.84■□□□□ 0.29
SHROOM3-208ENST00000486758 NPM1P06748 294 aaKnown RBP eCLIP16.84■□□□□ 0.29
SHROOM3-208ENST00000486758 MAPKBP1O60336 1514 aa16.84■□□□□ 0.29
SHROOM3-208ENST00000486758 CCDC184Q52MB2 194 aa16.82■□□□□ 0.28
SHROOM3-208ENST00000486758 EIF4G2P78344 907 aaKnown RBP eCLIP16.8■□□□□ 0.28
SHROOM3-208ENST00000486758 CCDC136Q96JN2 1154 aa16.8■□□□□ 0.28
SHROOM3-208ENST00000486758 MRC2Q9UBG0 1479 aa16.8■□□□□ 0.28
SHROOM3-208ENST00000486758 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.78■□□□□ 0.28
SHROOM3-208ENST00000486758 RRBP1Q9P2E9 1410 aaKnown RBP16.77■□□□□ 0.28
SHROOM3-208ENST00000486758 ZBTB47Q9UFB7 747 aaPredicted RBP16.77■□□□□ 0.27
SHROOM3-208ENST00000486758 HSPA5P11021 654 aaKnown RBP16.76■□□□□ 0.27
SHROOM3-208ENST00000486758 PPP4R2Q9NY27 417 aa16.76■□□□□ 0.27
SHROOM3-208ENST00000486758 CCER2I3L3R5 266 aa16.76■□□□□ 0.27
SHROOM3-208ENST00000486758 NOP58Q9Y2X3 529 aaKnown RBP16.76■□□□□ 0.27
SHROOM3-208ENST00000486758 ERICH3Q5RHP9 1530 aa16.75■□□□□ 0.27
SHROOM3-208ENST00000486758 EIF5BO60841 1220 aaKnown RBP16.75■□□□□ 0.27
SHROOM3-208ENST00000486758 LRRC9Q6ZRR7 1453 aa16.74■□□□□ 0.27
SHROOM3-208ENST00000486758 THOC2Q8NI27 1593 aaKnown RBP16.73■□□□□ 0.27
SHROOM3-208ENST00000486758 LAS1LQ9Y4W2 734 aaKnown RBP16.73■□□□□ 0.27
SHROOM3-208ENST00000486758 DAXXQ9UER7 740 aaPredicted RBP16.72■□□□□ 0.27
SHROOM3-208ENST00000486758 RGL3Q3MIN7 710 aa16.71■□□□□ 0.27
SHROOM3-208ENST00000486758 CFDP1Q9UEE9 299 aaPredicted RBP16.71■□□□□ 0.27
SHROOM3-208ENST00000486758 URB2Q14146 1524 aaKnown RBP16.71■□□□□ 0.26
SHROOM3-208ENST00000486758 PRDM2Q13029 1718 aa16.7■□□□□ 0.26
SHROOM3-208ENST00000486758 L3MBTL2Q969R5 705 aa16.69■□□□□ 0.26
SHROOM3-208ENST00000486758 MPHOSPH9Q99550 1183 aa16.68■□□□□ 0.26
SHROOM3-208ENST00000486758 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.68■□□□□ 0.26
SHROOM3-208ENST00000486758 ZNF644Q9H582 1327 aaPredicted RBP16.68■□□□□ 0.26
SHROOM3-208ENST00000486758 FMN1Q68DA7 1419 aa16.67■□□□□ 0.26
SHROOM3-208ENST00000486758 WDR62O43379 1518 aa16.65■□□□□ 0.26
SHROOM3-208ENST00000486758 TOPBP1Q92547 1522 aa16.64■□□□□ 0.25
SHROOM3-208ENST00000486758 FANCIQ9NVI1 1328 aa16.64■□□□□ 0.25
SHROOM3-208ENST00000486758 SENP3Q9H4L4 574 aaPredicted RBP16.64■□□□□ 0.25
SHROOM3-208ENST00000486758 PAK3O75914 559 aaPredicted RBP16.63■□□□□ 0.25
SHROOM3-208ENST00000486758 CCDC18Q5T9S5 1454 aa16.62■□□□□ 0.25
SHROOM3-208ENST00000486758 TMC1Q8TDI8 760 aa16.62■□□□□ 0.25
SHROOM3-208ENST00000486758 ANO8Q9HCE9 1232 aaPredicted RBP16.62■□□□□ 0.25
SHROOM3-208ENST00000486758 FGD6Q6ZV73 1430 aa16.61■□□□□ 0.25
SHROOM3-208ENST00000486758 TIAM1Q13009 1591 aa16.6■□□□□ 0.25
SHROOM3-208ENST00000486758 C11orf95C9JLR9 678 aaPredicted RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms