RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 ABCA5Q8WWZ7 1642 aa15.28■□□□□ 0.04
COL12A1-208ENST00000486533 BIVM-ERCC5R4GMW8 1640 aa15.28■□□□□ 0.04
COL12A1-208ENST00000486533 SYNJ1O43426 1573 aa15.28■□□□□ 0.04
COL12A1-208ENST00000486533 SYNJ2O15056 1496 aa15.27■□□□□ 0.03
COL12A1-208ENST00000486533 CYB5RLQ6IPT4 315 aa15.24■□□□□ 0.03
COL12A1-208ENST00000486533 CLASP1Q7Z460 1538 aa15.23■□□□□ 0.03
COL12A1-208ENST00000486533 NPM3O75607 178 aaKnown RBP15.23■□□□□ 0.03
COL12A1-208ENST00000486533 ARAP1Q96P48 1450 aa15.2■□□□□ 0.02
COL12A1-208ENST00000486533 RNF39Q9H2S5 420 aa15.17■□□□□ 0.02
COL12A1-208ENST00000486533 ADAMTS12P58397 1594 aa15.16■□□□□ 0.02
COL12A1-208ENST00000486533 GRIN2AQ12879 1464 aa15.15■□□□□ 0.02
COL12A1-208ENST00000486533 CACNB1Q02641 598 aaPredicted RBP15.14■□□□□ 0.01
COL12A1-208ENST00000486533 ERICH3Q5RHP9 1530 aa15.12■□□□□ 0.01
COL12A1-208ENST00000486533 FHAD1B1AJZ9 1412 aa15.12■□□□□ 0.01
COL12A1-208ENST00000486533 CEP170Q5SW79 1584 aa15.09■□□□□ 0.01
COL12A1-208ENST00000486533 NUP160Q12769 1436 aa15.07■□□□□ 0
COL12A1-208ENST00000486533 TRHP20396 242 aaPredicted RBP15.04■□□□□ -0
COL12A1-208ENST00000486533 ERCC6L2Q5T890 1561 aa15.01□□□□□ -0.01
COL12A1-208ENST00000486533 KCNA4P22459 653 aa15.01□□□□□ -0.01
COL12A1-208ENST00000486533 KIF27Q86VH2 1401 aa15□□□□□ -0.01
COL12A1-208ENST00000486533 SHROOM2Q13796 1616 aa14.99□□□□□ -0.01
COL12A1-208ENST00000486533 C1QBPQ07021 282 aaKnown RBP14.95□□□□□ -0.02
COL12A1-208ENST00000486533 RUSC2Q8N2Y8 1516 aa14.95□□□□□ -0.02
COL12A1-208ENST00000486533 CUL7Q14999 1698 aa14.95□□□□□ -0.02
COL12A1-208ENST00000486533 IGF1RP08069 1367 aa14.95□□□□□ -0.02
COL12A1-208ENST00000486533 PRG4Q92954 1404 aaPredicted RBP14.94□□□□□ -0.02
COL12A1-208ENST00000486533 JPH4Q96JJ6 628 aa14.92□□□□□ -0.02
COL12A1-208ENST00000486533 CARMIL1Q5VZK9 1371 aa14.87□□□□□ -0.03
COL12A1-208ENST00000486533 KIAA0586Q9BVV6 1533 aa14.86□□□□□ -0.03
COL12A1-208ENST00000486533 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.85□□□□□ -0.03
COL12A1-208ENST00000486533 IQGAP2Q13576 1575 aa14.77□□□□□ -0.04
COL12A1-208ENST00000486533 RAPGEF2Q9Y4G8 1499 aa14.76□□□□□ -0.05
COL12A1-208ENST00000486533 NPM1P06748 294 aaKnown RBP eCLIP14.75□□□□□ -0.05
COL12A1-208ENST00000486533 ADCY10Q96PN6 1610 aa14.75□□□□□ -0.05
COL12A1-208ENST00000486533 TTBK1Q5TCY1 1321 aaPredicted RBP14.75□□□□□ -0.05
COL12A1-208ENST00000486533 CARMIL2Q6F5E8 1435 aa14.74□□□□□ -0.05
COL12A1-208ENST00000486533 KIF13AQ9H1H9 1805 aa14.72□□□□□ -0.05
COL12A1-208ENST00000486533 PTPRGP23470 1445 aa14.72□□□□□ -0.05
COL12A1-208ENST00000486533 TNIKQ9UKE5 1360 aa14.7□□□□□ -0.06
COL12A1-208ENST00000486533 MAPKBP1O60336 1514 aa14.69□□□□□ -0.06
COL12A1-208ENST00000486533 FAM69CQ0P6D2 419 aa14.66□□□□□ -0.06
COL12A1-208ENST00000486533 ABCC10Q5T3U5 1492 aa14.66□□□□□ -0.06
COL12A1-208ENST00000486533 DISP1Q96F81 1524 aa14.66□□□□□ -0.06
COL12A1-208ENST00000486533 CTTNBP2Q8WZ74 1663 aa14.65□□□□□ -0.06
COL12A1-208ENST00000486533 UGGT2Q9NYU1 1516 aa14.65□□□□□ -0.06
COL12A1-208ENST00000486533 DIP2BQ9P265 1576 aa14.64□□□□□ -0.07
COL12A1-208ENST00000486533 KIAA0556O60303 1618 aa14.62□□□□□ -0.07
COL12A1-208ENST00000486533 ABCC2Q92887 1545 aa14.62□□□□□ -0.07
COL12A1-208ENST00000486533 PRXQ9BXM0 1461 aa14.62□□□□□ -0.07
COL12A1-208ENST00000486533 U3KPZ7 1027 aaPredicted RBP14.61□□□□□ -0.07
COL12A1-208ENST00000486533 UACAQ9BZF9 1416 aa14.6□□□□□ -0.07
COL12A1-208ENST00000486533 UHRF1BP1LA0JNW5 1464 aa14.58□□□□□ -0.07
COL12A1-208ENST00000486533 TSPOAP1O95153 1857 aa14.57□□□□□ -0.08
COL12A1-208ENST00000486533 GOLGA3Q08378 1498 aa14.56□□□□□ -0.08
COL12A1-208ENST00000486533 ASXL2Q76L83 1435 aa14.56□□□□□ -0.08
COL12A1-208ENST00000486533 PLB1Q6P1J6 1458 aa14.55□□□□□ -0.08
COL12A1-208ENST00000486533 CSRNP3Q8WYN3 585 aa14.55□□□□□ -0.08
COL12A1-208ENST00000486533 KDM5BQ9UGL1 1544 aa14.53□□□□□ -0.08
COL12A1-208ENST00000486533 SLC4A2P04920 1241 aa14.53□□□□□ -0.08
COL12A1-208ENST00000486533 ZCCHC11Q5TAX3 1644 aaKnown RBP14.53□□□□□ -0.08
COL12A1-208ENST00000486533 EEA1Q15075 1411 aa14.51□□□□□ -0.09
COL12A1-208ENST00000486533 KDM6BO15054 1643 aa14.5□□□□□ -0.09
COL12A1-208ENST00000486533 FAM9AQ8IZU1 332 aaPredicted RBP14.49□□□□□ -0.09
COL12A1-208ENST00000486533 GLI2P10070 1586 aa14.48□□□□□ -0.09
COL12A1-208ENST00000486533 P3H3Q8IVL6 736 aa14.47□□□□□ -0.09
COL12A1-208ENST00000486533 EPRSP07814 1512 aaKnown RBP14.46□□□□□ -0.09
COL12A1-208ENST00000486533 ABCA8O94911 1581 aa14.46□□□□□ -0.09
COL12A1-208ENST00000486533 PPRC1Q5VV67 1664 aaKnown RBP14.44□□□□□ -0.1
COL12A1-208ENST00000486533 WDR7Q9Y4E6 1490 aa14.44□□□□□ -0.1
COL12A1-208ENST00000486533 MAP3K4Q9Y6R4 1608 aa14.43□□□□□ -0.1
COL12A1-208ENST00000486533 RANGAP1P46060 587 aaPredicted RBP14.43□□□□□ -0.1
COL12A1-208ENST00000486533 SAMD9Q5K651 1589 aa14.42□□□□□ -0.1
COL12A1-208ENST00000486533 ARID3CA6NKF2 412 aa14.4□□□□□ -0.1
COL12A1-208ENST00000486533 KIF21BO75037 1637 aa14.4□□□□□ -0.1
COL12A1-208ENST00000486533 TEX14Q8IWB6 1497 aa14.39□□□□□ -0.11
COL12A1-208ENST00000486533 KCNH8Q96L42 1107 aa14.39□□□□□ -0.11
COL12A1-208ENST00000486533 RAPGEF6Q8TEU7 1601 aa14.36□□□□□ -0.11
COL12A1-208ENST00000486533 EHMT2Q96KQ7 1210 aa14.36□□□□□ -0.11
COL12A1-208ENST00000486533 FHOD3Q2V2M9 1422 aa14.36□□□□□ -0.11
COL12A1-208ENST00000486533 SPINK5Q9NQ38 1064 aaPredicted RBP14.35□□□□□ -0.11
COL12A1-208ENST00000486533 CFAP43Q8NDM7 1665 aa14.35□□□□□ -0.11
COL12A1-208ENST00000486533 ATP10BO94823 1461 aa14.35□□□□□ -0.11
COL12A1-208ENST00000486533 CD109Q6YHK3 1445 aa14.34□□□□□ -0.11
COL12A1-208ENST00000486533 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.33□□□□□ -0.12
COL12A1-208ENST00000486533 HNRNPUL2Q1KMD3 747 aaKnown RBP14.33□□□□□ -0.12
COL12A1-208ENST00000486533 COL17A1Q9UMD9 1497 aaPredicted RBP14.32□□□□□ -0.12
COL12A1-208ENST00000486533 EFCAB5A4FU69 1503 aa14.31□□□□□ -0.12
COL12A1-208ENST00000486533 UBTFP17480 764 aaKnown RBP14.31□□□□□ -0.12
COL12A1-208ENST00000486533 MAGI3Q5TCQ9 1506 aa14.3□□□□□ -0.12
COL12A1-208ENST00000486533 NUP153P49790 1475 aaKnown RBP14.3□□□□□ -0.12
COL12A1-208ENST00000486533 CAPN15O75808 1086 aa14.29□□□□□ -0.12
COL12A1-208ENST00000486533 HRCP23327 699 aa14.28□□□□□ -0.12
COL12A1-208ENST00000486533 ABCA9Q8IUA7 1624 aa14.26□□□□□ -0.13
COL12A1-208ENST00000486533 KDM4FA0A1W2PPD8 638 aa14.26□□□□□ -0.13
COL12A1-208ENST00000486533 DSG3P32926 999 aa14.23□□□□□ -0.13
COL12A1-208ENST00000486533 PLEKHD1A6NEE1 506 aa14.22□□□□□ -0.13
COL12A1-208ENST00000486533 ADGRL1O94910 1474 aa14.21□□□□□ -0.14
COL12A1-208ENST00000486533 ATP1B4Q9UN42 357 aaPredicted RBP14.2□□□□□ -0.14
COL12A1-208ENST00000486533 ARHGAP35Q9NRY4 1499 aa14.2□□□□□ -0.14
COL12A1-208ENST00000486533 FMN1Q68DA7 1419 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 358 ms