RNA–Protein interactions for RNA: ENST00000479510.2

SYNGAP1-206, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 2

Gene SYNGAP1, Length 2,073 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-206ENST00000479510 EFCAB5A4FU69 1503 aa36■■■■□ 3.35
SYNGAP1-206ENST00000479510 TOPBP1Q92547 1522 aa35.99■■■■□ 3.35
SYNGAP1-206ENST00000479510 CUL7Q14999 1698 aa35.98■■■■□ 3.35
SYNGAP1-206ENST00000479510 POLA1P09884 1462 aaPredicted RBP35.95■■■■□ 3.35
SYNGAP1-206ENST00000479510 AQRO60306 1485 aaKnown RBP eCLIP35.92■■■■□ 3.34
SYNGAP1-206ENST00000479510 PCF11O94913 1555 aaKnown RBP35.89■■■■□ 3.34
SYNGAP1-206ENST00000479510 FYCO1Q9BQS8 1478 aa35.89■■■■□ 3.34
SYNGAP1-206ENST00000479510 RAB3GAP2Q9H2M9 1393 aa35.88■■■■□ 3.33
SYNGAP1-206ENST00000479510 RAD54L2Q9Y4B4 1467 aa35.87■■■■□ 3.33
SYNGAP1-206ENST00000479510 SETD5Q9C0A6 1442 aa35.85■■■■□ 3.33
SYNGAP1-206ENST00000479510 PHLDB1Q86UU1 1377 aa35.83■■■■□ 3.33
SYNGAP1-206ENST00000479510 CASKIN1Q8WXD9 1431 aa35.82■■■■□ 3.33
SYNGAP1-206ENST00000479510 YTHDC1Q96MU7 727 aaKnown RBP35.82■■■■□ 3.33
SYNGAP1-206ENST00000479510 LAMC3Q9Y6N6 1575 aa35.82■■■■□ 3.32
SYNGAP1-206ENST00000479510 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.8■■■■□ 3.324e-6■■■■□ 23.1
SYNGAP1-206ENST00000479510 CTTNBP2Q8WZ74 1663 aa35.8■■■■□ 3.32
SYNGAP1-206ENST00000479510 MAPKBP1O60336 1514 aa35.79■■■■□ 3.32
SYNGAP1-206ENST00000479510 WDR97A6NE52 1622 aa35.76■■■■□ 3.31
SYNGAP1-206ENST00000479510 ITGAEP38570 1179 aa35.74■■■■□ 3.31
SYNGAP1-206ENST00000479510 NESP48681 1621 aa35.72■■■■□ 3.31
SYNGAP1-206ENST00000479510 FHOD3Q2V2M9 1422 aa35.72■■■■□ 3.31
SYNGAP1-206ENST00000479510 FMN1Q68DA7 1419 aa35.71■■■■□ 3.31
SYNGAP1-206ENST00000479510 URB2Q14146 1524 aaKnown RBP35.65■■■■□ 3.3
SYNGAP1-206ENST00000479510 ABCA5Q8WWZ7 1642 aa35.63■■■■□ 3.29
SYNGAP1-206ENST00000479510 TIMELESSQ9UNS1 1208 aa35.61■■■■□ 3.29
SYNGAP1-206ENST00000479510 P3H3Q8IVL6 736 aa35.6■■■■□ 3.29
SYNGAP1-206ENST00000479510 FAM50AQ14320 339 aaKnown RBP35.58■■■■□ 3.29
SYNGAP1-206ENST00000479510 SAMD9Q5K651 1589 aa35.57■■■■□ 3.28
SYNGAP1-206ENST00000479510 SNAPC4Q5SXM2 1469 aa35.57■■■■□ 3.28
SYNGAP1-206ENST00000479510 PDS5BQ9NTI5 1447 aa35.54■■■■□ 3.28
SYNGAP1-206ENST00000479510 THOC2Q8NI27 1593 aaKnown RBP35.51■■■■□ 3.27
SYNGAP1-206ENST00000479510 GAPVD1Q14C86 1478 aa35.5■■■■□ 3.27
SYNGAP1-206ENST00000479510 ATP1B4Q9UN42 357 aaPredicted RBP35.47■■■■□ 3.27
SYNGAP1-206ENST00000479510 FGD6Q6ZV73 1430 aa35.47■■■■□ 3.27
SYNGAP1-206ENST00000479510 KIF21AQ7Z4S6 1674 aa35.39■■■■□ 3.26
SYNGAP1-206ENST00000479510 GRIN2BQ13224 1484 aa35.38■■■■□ 3.26
SYNGAP1-206ENST00000479510 TDRD9Q8NDG6 1382 aaKnown RBP35.38■■■■□ 3.25
SYNGAP1-206ENST00000479510 MTUS2Q5JR59 1369 aa35.37■■■■□ 3.25
SYNGAP1-206ENST00000479510 HFM1A2PYH4 1435 aa35.31■■■■□ 3.24
SYNGAP1-206ENST00000479510 EHBP1L1Q8N3D4 1523 aa35.3■■■■□ 3.24
SYNGAP1-206ENST00000479510 TARBP1Q13395 1621 aaKnown RBP35.29■■■■□ 3.24
SYNGAP1-206ENST00000479510 MYOM3Q5VTT5 1437 aa35.27■■■■□ 3.24
SYNGAP1-206ENST00000479510 SUPT6HQ7KZ85 1726 aaKnown RBP35.26■■■■□ 3.24
SYNGAP1-206ENST00000479510 LRRIQ1Q96JM4 1722 aa35.26■■■■□ 3.24
SYNGAP1-206ENST00000479510 SIN3AQ96ST3 1273 aa35.26■■■■□ 3.23
SYNGAP1-206ENST00000479510 NCOA2Q15596 1464 aa35.26■■■■□ 3.23
SYNGAP1-206ENST00000479510 CCDC18Q5T9S5 1454 aa35.23■■■■□ 3.23
SYNGAP1-206ENST00000479510 UACAQ9BZF9 1416 aa35.22■■■■□ 3.23
SYNGAP1-206ENST00000479510 PTPN23Q9H3S7 1636 aa35.2■■■■□ 3.23
SYNGAP1-206ENST00000479510 PPP1R15AO75807 674 aaPredicted RBP35.2■■■■□ 3.22
SYNGAP1-206ENST00000479510 ARHGEF11O15085 1522 aa35.2■■■■□ 3.22
SYNGAP1-206ENST00000479510 UGGT2Q9NYU1 1516 aa35.16■■■■□ 3.22
SYNGAP1-206ENST00000479510 PTPRKQ15262 1439 aa35.14■■■■□ 3.22
SYNGAP1-206ENST00000479510 NAIPQ13075 1403 aa35.11■■■■□ 3.21
SYNGAP1-206ENST00000479510 PBRM1Q86U86 1689 aa35.11■■■■□ 3.21
SYNGAP1-206ENST00000479510 HECW1Q76N89 1606 aa35.1■■■■□ 3.21
SYNGAP1-206ENST00000479510 TCOF1Q13428 1488 aaKnown RBP35.08■■■■□ 3.21
SYNGAP1-206ENST00000479510 IQGAP2Q13576 1575 aa35.06■■■■□ 3.2
SYNGAP1-206ENST00000479510 TONSLQ96HA7 1378 aa35.05■■■■□ 3.2
SYNGAP1-206ENST00000479510 ADAMTS12P58397 1594 aa35.04■■■■□ 3.2
SYNGAP1-206ENST00000479510 DNAJC5BQ9UF47 199 aa35.03■■■■□ 3.2
SYNGAP1-206ENST00000479510 AKNAQ7Z591 1439 aa35.03■■■■□ 3.2
SYNGAP1-206ENST00000479510 MAGI3Q5TCQ9 1506 aa35■■■■□ 3.19
SYNGAP1-206ENST00000479510 DDX10Q13206 875 aaKnown RBP34.97■■■■□ 3.19
SYNGAP1-206ENST00000479510 MRC2Q9UBG0 1479 aa34.97■■■■□ 3.19
SYNGAP1-206ENST00000479510 SUPT16HQ9Y5B9 1047 aaKnown RBP34.97■■■■□ 3.19
SYNGAP1-206ENST00000479510 MIA2Q96PC5 1412 aa34.94■■■■□ 3.18
SYNGAP1-206ENST00000479510 EPRSP07814 1512 aaKnown RBP34.94■■■■□ 3.18
SYNGAP1-206ENST00000479510 GCC2Q8IWJ2 1684 aa34.94■■■■□ 3.18
SYNGAP1-206ENST00000479510 CCER2I3L3R5 266 aa34.93■■■■□ 3.18
SYNGAP1-206ENST00000479510 WDR62O43379 1518 aa34.89■■■■□ 3.18
SYNGAP1-206ENST00000479510 IFT140Q96RY7 1462 aa34.82■■■■□ 3.16
SYNGAP1-206ENST00000479510 KCNH8Q96L42 1107 aa34.82■■■■□ 3.16
SYNGAP1-206ENST00000479510 KDM5BQ9UGL1 1544 aa34.82■■■■□ 3.16
SYNGAP1-206ENST00000479510 MYT1Q01538 1121 aa34.8■■■■□ 3.16
SYNGAP1-206ENST00000479510 ANP32CO43423 234 aa34.78■■■■□ 3.16
SYNGAP1-206ENST00000479510 KIAA0586Q9BVV6 1533 aa34.74■■■■□ 3.15
SYNGAP1-206ENST00000479510 CDK13Q14004 1512 aaKnown RBP34.73■■■■□ 3.15
SYNGAP1-206ENST00000479510 ROCK1Q13464 1354 aa34.69■■■■□ 3.14
SYNGAP1-206ENST00000479510 KIAA0556O60303 1618 aa34.67■■■■□ 3.14
SYNGAP1-206ENST00000479510 DENND4BO75064 1496 aaPredicted RBP34.67■■■■□ 3.14
SYNGAP1-206ENST00000479510 RRP7BPQ9NSQ0 103 aa34.67■■■■□ 3.14
SYNGAP1-206ENST00000479510 HIRIP3Q9BW71 556 aaPredicted RBP34.64■■■■□ 3.14
SYNGAP1-206ENST00000479510 DISP1Q96F81 1524 aa34.63■■■■□ 3.13
SYNGAP1-206ENST00000479510 CHIC2Q9UKJ5 165 aa34.59■■■■□ 3.13
SYNGAP1-206ENST00000479510 ZNF608Q9ULD9 1512 aaPredicted RBP34.58■■■■□ 3.13
SYNGAP1-206ENST00000479510 KDM6BO15054 1643 aa34.58■■■■□ 3.13
SYNGAP1-206ENST00000479510 DNMT1P26358 1616 aaKnown RBP34.57■■■■□ 3.12
SYNGAP1-206ENST00000479510 DAPK1P53355 1430 aa34.56■■■■□ 3.12
SYNGAP1-206ENST00000479510 RAPGEF6Q8TEU7 1601 aa34.55■■■■□ 3.12
SYNGAP1-206ENST00000479510 TRIM52Q96A61 297 aa34.55■■■■□ 3.12
SYNGAP1-206ENST00000479510 MPHOSPH9Q99550 1183 aa34.55■■■■□ 3.12
SYNGAP1-206ENST00000479510 GRIN2AQ12879 1464 aa34.55■■■■□ 3.12
SYNGAP1-206ENST00000479510 NUP153P49790 1475 aaKnown RBP34.55■■■■□ 3.12
SYNGAP1-206ENST00000479510 CDK11AQ9UQ88 783 aaPredicted RBP34.52■■■■□ 3.12
SYNGAP1-206ENST00000479510 ABCC5O15440 1437 aa34.48■■■■□ 3.11
SYNGAP1-206ENST00000479510 EIF4G3O43432 1585 aaKnown RBP34.46■■■■□ 3.11
SYNGAP1-206ENST00000479510 MAGI1Q96QZ7 1491 aaPredicted RBP34.44■■■■□ 3.1
SYNGAP1-206ENST00000479510 EIF4G2P78344 907 aaKnown RBP eCLIP34.43■■■■□ 3.11e-7■■■■■ 32.2
SYNGAP1-206ENST00000479510 RPRD2Q5VT52 1461 aaKnown RBP34.42■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms