RNA–Protein interactions for RNA: ENST00000478139.1

SYCP3-204, Transcript of synaptonemal complex protein 3, humanhuman

TSL 2

Gene SYCP3, Length 3,690 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYCP3-204ENST00000478139 RAPGEF2Q9Y4G8 1499 aa11.56□□□□□ -0.56
SYCP3-204ENST00000478139 ABCA10Q8WWZ4 1543 aa11.56□□□□□ -0.56
SYCP3-204ENST00000478139 GOLGA3Q08378 1498 aa11.54□□□□□ -0.56
SYCP3-204ENST00000478139 PLEKHD1A6NEE1 506 aa11.54□□□□□ -0.56
SYCP3-204ENST00000478139 SCAF1Q9H7N4 1312 aaKnown RBP11.53□□□□□ -0.56
SYCP3-204ENST00000478139 MAGI1Q96QZ7 1491 aaPredicted RBP11.53□□□□□ -0.56
SYCP3-204ENST00000478139 SYNJ2O15056 1496 aa11.51□□□□□ -0.57
SYCP3-204ENST00000478139 PTPRGP23470 1445 aa11.5□□□□□ -0.57
SYCP3-204ENST00000478139 THOC2Q8NI27 1593 aaKnown RBP11.5□□□□□ -0.57
SYCP3-204ENST00000478139 DNAJC5Q9H3Z4 198 aa11.5□□□□□ -0.57
SYCP3-204ENST00000478139 RUSC2Q8N2Y8 1516 aa11.48□□□□□ -0.57
SYCP3-204ENST00000478139 DAXXQ9UER7 740 aaPredicted RBP11.48□□□□□ -0.57
SYCP3-204ENST00000478139 ZNF777Q9ULD5 760 aaPredicted RBP11.48□□□□□ -0.57
SYCP3-204ENST00000478139 PELP1Q8IZL8 1130 aaKnown RBP11.47□□□□□ -0.57
SYCP3-204ENST00000478139 CLIP1P30622 1438 aa11.46□□□□□ -0.57
SYCP3-204ENST00000478139 PRG4Q92954 1404 aaPredicted RBP11.46□□□□□ -0.58
SYCP3-204ENST00000478139 PRDM2Q13029 1718 aa11.46□□□□□ -0.58
SYCP3-204ENST00000478139 ITGAEP38570 1179 aa11.44□□□□□ -0.58
SYCP3-204ENST00000478139 GRIN2AQ12879 1464 aa11.43□□□□□ -0.58
SYCP3-204ENST00000478139 PLPPR3Q6T4P5 718 aa11.43□□□□□ -0.58
SYCP3-204ENST00000478139 ERICH3Q5RHP9 1530 aa11.42□□□□□ -0.58
SYCP3-204ENST00000478139 EIF4G3O43432 1585 aaKnown RBP11.42□□□□□ -0.58
SYCP3-204ENST00000478139 CCER1Q8TC90 406 aaPredicted RBP11.41□□□□□ -0.58
SYCP3-204ENST00000478139 MTUS2Q5JR59 1369 aa11.41□□□□□ -0.58
SYCP3-204ENST00000478139 BIVM-ERCC5R4GMW8 1640 aa11.4□□□□□ -0.58
SYCP3-204ENST00000478139 FAM50AQ14320 339 aaKnown RBP11.4□□□□□ -0.58
SYCP3-204ENST00000478139 TNIKQ9UKE5 1360 aa11.39□□□□□ -0.59
SYCP3-204ENST00000478139 ESF1Q9H501 851 aaKnown RBP11.39□□□□□ -0.59
SYCP3-204ENST00000478139 FAM69CQ0P6D2 419 aa11.39□□□□□ -0.59
SYCP3-204ENST00000478139 KIAA0586Q9BVV6 1533 aa11.38□□□□□ -0.59
SYCP3-204ENST00000478139 FHOD3Q2V2M9 1422 aa11.34□□□□□ -0.59
SYCP3-204ENST00000478139 FMN1Q68DA7 1419 aa11.34□□□□□ -0.59
SYCP3-204ENST00000478139 CEP162Q5TB80 1403 aa11.33□□□□□ -0.6
SYCP3-204ENST00000478139 TARBP1Q13395 1621 aaKnown RBP11.32□□□□□ -0.6
SYCP3-204ENST00000478139 ARID4BQ4LE39 1312 aaPredicted RBP11.32□□□□□ -0.6
SYCP3-204ENST00000478139 NEUROD1Q13562 356 aa11.32□□□□□ -0.6
SYCP3-204ENST00000478139 CUL7Q14999 1698 aa11.31□□□□□ -0.6
SYCP3-204ENST00000478139 WDR97A6NE52 1622 aa11.31□□□□□ -0.6
SYCP3-204ENST00000478139 ACIN1Q9UKV3 1341 aaKnown RBP11.3□□□□□ -0.6
SYCP3-204ENST00000478139 TSPY4P0CV99 314 aa11.3□□□□□ -0.6
SYCP3-204ENST00000478139 TSPY10P0CW01 314 aa11.3□□□□□ -0.6
SYCP3-204ENST00000478139 CFDP1Q9UEE9 299 aaPredicted RBP11.3□□□□□ -0.6
SYCP3-204ENST00000478139 PRXQ9BXM0 1461 aa11.29□□□□□ -0.6
SYCP3-204ENST00000478139 RTN4Q9NQC3 1192 aaKnown RBP11.29□□□□□ -0.6
SYCP3-204ENST00000478139 DIEXFQ68CQ4 756 aaKnown RBP11.28□□□□□ -0.6
SYCP3-204ENST00000478139 ADAMTS12P58397 1594 aa11.27□□□□□ -0.61
SYCP3-204ENST00000478139 EFCAB2Q5VUJ9 269 aa11.27□□□□□ -0.61
SYCP3-204ENST00000478139 IQGAP2Q13576 1575 aa11.26□□□□□ -0.61
SYCP3-204ENST00000478139 PRKCSHP14314 528 aaPredicted RBP11.25□□□□□ -0.61
SYCP3-204ENST00000478139 NUP160Q12769 1436 aa11.24□□□□□ -0.61
SYCP3-204ENST00000478139 UACAQ9BZF9 1416 aa11.24□□□□□ -0.61
SYCP3-204ENST00000478139 ABCA5Q8WWZ7 1642 aa11.24□□□□□ -0.61
SYCP3-204ENST00000478139 CCNB3Q8WWL7 1395 aa11.23□□□□□ -0.61
SYCP3-204ENST00000478139 GTF3C3Q9Y5Q9 886 aa11.23□□□□□ -0.61
SYCP3-204ENST00000478139 PBRM1Q86U86 1689 aa11.22□□□□□ -0.61
SYCP3-204ENST00000478139 TRIM52Q96A61 297 aa11.2□□□□□ -0.62
SYCP3-204ENST00000478139 CENPBP07199 599 aaPredicted RBP11.19□□□□□ -0.62
SYCP3-204ENST00000478139 ARHGEF11O15085 1522 aa11.19□□□□□ -0.62
SYCP3-204ENST00000478139 AEBP2Q6ZN18 517 aaPredicted RBP11.19□□□□□ -0.62
SYCP3-204ENST00000478139 MLECQ14165 292 aa11.18□□□□□ -0.62
SYCP3-204ENST00000478139 KIF21BO75037 1637 aa11.17□□□□□ -0.62
SYCP3-204ENST00000478139 CHD1O14646 1710 aa11.17□□□□□ -0.62
SYCP3-204ENST00000478139 CHIC2Q9UKJ5 165 aa11.17□□□□□ -0.62
SYCP3-204ENST00000478139 MYT1Q01538 1121 aa11.16□□□□□ -0.62
SYCP3-204ENST00000478139 NCBP3Q53F19 620 aaKnown RBP11.15□□□□□ -0.62
SYCP3-204ENST00000478139 VPS8Q8N3P4 1428 aa11.14□□□□□ -0.63
SYCP3-204ENST00000478139 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.14□□□□□ -0.63
SYCP3-204ENST00000478139 CEP170Q5SW79 1584 aa11.14□□□□□ -0.63
SYCP3-204ENST00000478139 CCDC18Q5T9S5 1454 aa11.14□□□□□ -0.63
SYCP3-204ENST00000478139 YTHDC1Q96MU7 727 aaKnown RBP11.13□□□□□ -0.63
SYCP3-204ENST00000478139 EFCAB5A4FU69 1503 aa11.13□□□□□ -0.63
SYCP3-204ENST00000478139 PLB1Q6P1J6 1458 aa11.13□□□□□ -0.63
SYCP3-204ENST00000478139 STAG3Q9UJ98 1225 aa11.12□□□□□ -0.63
SYCP3-204ENST00000478139 ZNF316A6NFI3 1004 aaPredicted RBP11.11□□□□□ -0.63
SYCP3-204ENST00000478139 BCANQ96GW7 911 aa11.1□□□□□ -0.63
SYCP3-204ENST00000478139 ARHGAP35Q9NRY4 1499 aa11.09□□□□□ -0.63
SYCP3-204ENST00000478139 SPAG9O60271 1321 aaKnown RBP11.08□□□□□ -0.64
SYCP3-204ENST00000478139 HNRNPMP52272 730 aaKnown RBP eCLIP11.07□□□□□ -0.64
SYCP3-204ENST00000478139 CD109Q6YHK3 1445 aa11.07□□□□□ -0.64
SYCP3-204ENST00000478139 UGGT2Q9NYU1 1516 aa11.07□□□□□ -0.64
SYCP3-204ENST00000478139 GGT6Q6P531 493 aa11.06□□□□□ -0.64
SYCP3-204ENST00000478139 ASXL2Q76L83 1435 aa11.06□□□□□ -0.64
SYCP3-204ENST00000478139 ARAP1Q96P48 1450 aa11.06□□□□□ -0.64
SYCP3-204ENST00000478139 CHGAP10645 457 aaKnown RBP11.06□□□□□ -0.64
SYCP3-204ENST00000478139 CASKIN1Q8WXD9 1431 aa11.05□□□□□ -0.64
SYCP3-204ENST00000478139 KANK4Q5T7N3 995 aaPredicted RBP11.05□□□□□ -0.64
SYCP3-204ENST00000478139 RSPH4AQ5TD94 716 aa11.05□□□□□ -0.64
SYCP3-204ENST00000478139 RRP7BPQ9NSQ0 103 aa11.05□□□□□ -0.64
SYCP3-204ENST00000478139 MIER1Q8N108 512 aa11.04□□□□□ -0.64
SYCP3-204ENST00000478139 ABCC2Q92887 1545 aa11.03□□□□□ -0.64
SYCP3-204ENST00000478139 RAPGEF3O95398 923 aa11.02□□□□□ -0.64
SYCP3-204ENST00000478139 TROQ12816 1431 aaPredicted RBP11.02□□□□□ -0.65
SYCP3-204ENST00000478139 KIAA0556O60303 1618 aa11.02□□□□□ -0.65
SYCP3-204ENST00000478139 DISP1Q96F81 1524 aa11.01□□□□□ -0.65
SYCP3-204ENST00000478139 RIMBP3CA6NJZ7 1639 aa11.01□□□□□ -0.65
SYCP3-204ENST00000478139 RIMBP3BA6NNM3 1639 aa11.01□□□□□ -0.65
SYCP3-204ENST00000478139 RIMBP3Q9UFD9 1639 aa11.01□□□□□ -0.65
SYCP3-204ENST00000478139 HECW1Q76N89 1606 aa10.99□□□□□ -0.65
SYCP3-204ENST00000478139 KIF3BO15066 747 aa10.99□□□□□ -0.65
SYCP3-204ENST00000478139 FYCO1Q9BQS8 1478 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms