RNA–Protein interactions for RNA: ENST00000477819.1

PTPRN-214, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 579 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-214ENST00000477819 CHMP7Q8WUX9 453 aaPredicted RBP14.44□□□□□ -0.1
PTPRN-214ENST00000477819 SLC4A1APQ9BWU0 796 aaKnown RBP14.44□□□□□ -0.1
PTPRN-214ENST00000477819 SNAPC4Q5SXM2 1469 aa14.44□□□□□ -0.1
PTPRN-214ENST00000477819 SYNJ1O43426 1573 aa14.4□□□□□ -0.1
PTPRN-214ENST00000477819 GAPVD1Q14C86 1478 aa14.39□□□□□ -0.11
PTPRN-214ENST00000477819 ILDR1Q86SU0 546 aaPredicted RBP14.39□□□□□ -0.11
PTPRN-214ENST00000477819 DSG3P32926 999 aa14.38□□□□□ -0.11
PTPRN-214ENST00000477819 SOGA1O94964 1423 aa14.38□□□□□ -0.11
PTPRN-214ENST00000477819 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.34□□□□□ -0.11
PTPRN-214ENST00000477819 HNRNPUL2Q1KMD3 747 aaKnown RBP14.34□□□□□ -0.11
PTPRN-214ENST00000477819 MAGI1Q96QZ7 1491 aaPredicted RBP14.32□□□□□ -0.12
PTPRN-214ENST00000477819 APLP2Q06481 763 aa14.31□□□□□ -0.12
PTPRN-214ENST00000477819 SYNJ2O15056 1496 aa14.31□□□□□ -0.12
PTPRN-214ENST00000477819 ERCC6L2Q5T890 1561 aa14.3□□□□□ -0.12
PTPRN-214ENST00000477819 SAMD1Q6SPF0 538 aaPredicted RBP14.29□□□□□ -0.12
PTPRN-214ENST00000477819 GRIN2BQ13224 1484 aa14.29□□□□□ -0.12
PTPRN-214ENST00000477819 FGD5Q6ZNL6 1462 aa14.28□□□□□ -0.12
PTPRN-214ENST00000477819 MYCNP04198 464 aaPredicted RBP14.27□□□□□ -0.13
PTPRN-214ENST00000477819 ABCB7O75027 752 aa14.25□□□□□ -0.13
PTPRN-214ENST00000477819 ZNF219Q9P2Y4 722 aaPredicted RBP14.25□□□□□ -0.13
PTPRN-214ENST00000477819 WDR97A6NE52 1622 aa14.24□□□□□ -0.13
PTPRN-214ENST00000477819 KIF13AQ9H1H9 1805 aa14.24□□□□□ -0.13
PTPRN-214ENST00000477819 KDM4FA0A1W2PPD8 638 aa14.23□□□□□ -0.13
PTPRN-214ENST00000477819 FOXD4L1Q9NU39 408 aa14.2□□□□□ -0.14
PTPRN-214ENST00000477819 PBRM1Q86U86 1689 aa14.2□□□□□ -0.14
PTPRN-214ENST00000477819 CUX1P39880 1505 aa14.19□□□□□ -0.14
PTPRN-214ENST00000477819 CEP170Q5SW79 1584 aa14.17□□□□□ -0.14
PTPRN-214ENST00000477819 FAM69CQ0P6D2 419 aa14.14□□□□□ -0.15
PTPRN-214ENST00000477819 GRIN2AQ12879 1464 aa14.11□□□□□ -0.15
PTPRN-214ENST00000477819 ABCA5Q8WWZ7 1642 aa14.08□□□□□ -0.15
PTPRN-214ENST00000477819 ZBTB22O15209 634 aa14.08□□□□□ -0.16
PTPRN-214ENST00000477819 NUP160Q12769 1436 aa14.07□□□□□ -0.16
PTPRN-214ENST00000477819 SHROOM2Q13796 1616 aa14.07□□□□□ -0.16
PTPRN-214ENST00000477819 ABCC10Q5T3U5 1492 aa14.06□□□□□ -0.16
PTPRN-214ENST00000477819 ABCA10Q8WWZ4 1543 aa14.05□□□□□ -0.16
PTPRN-214ENST00000477819 KDM6BO15054 1643 aa14.04□□□□□ -0.16
PTPRN-214ENST00000477819 PRG4Q92954 1404 aaPredicted RBP14.03□□□□□ -0.16
PTPRN-214ENST00000477819 ADAMTS12P58397 1594 aa14.02□□□□□ -0.16
PTPRN-214ENST00000477819 TSPOAP1O95153 1857 aa14.01□□□□□ -0.17
PTPRN-214ENST00000477819 DIP2BQ9P265 1576 aa14.01□□□□□ -0.17
PTPRN-214ENST00000477819 NPM1P06748 294 aaKnown RBP eCLIP14□□□□□ -0.17
PTPRN-214ENST00000477819 ATF5Q9Y2D1 282 aaPredicted RBP13.99□□□□□ -0.17
PTPRN-214ENST00000477819 JPH4Q96JJ6 628 aa13.98□□□□□ -0.17
PTPRN-214ENST00000477819 MAPKBP1O60336 1514 aa13.96□□□□□ -0.17
PTPRN-214ENST00000477819 FHAD1B1AJZ9 1412 aa13.96□□□□□ -0.18
PTPRN-214ENST00000477819 POLA2Q14181 598 aa13.95□□□□□ -0.18
PTPRN-214ENST00000477819 ADCY10Q96PN6 1610 aa13.93□□□□□ -0.18
PTPRN-214ENST00000477819 ADGRL1O94910 1474 aa13.93□□□□□ -0.18
PTPRN-214ENST00000477819 HECW2Q9P2P5 1572 aa13.92□□□□□ -0.18
PTPRN-214ENST00000477819 WRNQ14191 1432 aaPredicted RBP eCLIP13.9□□□□□ -0.19
PTPRN-214ENST00000477819 ERICH3Q5RHP9 1530 aa13.85□□□□□ -0.19
PTPRN-214ENST00000477819 RUSC2Q8N2Y8 1516 aa13.84□□□□□ -0.19
PTPRN-214ENST00000477819 FBXO41Q8TF61 875 aa13.82□□□□□ -0.2
PTPRN-214ENST00000477819 TTBK1Q5TCY1 1321 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-214ENST00000477819 PPRC1Q5VV67 1664 aaKnown RBP13.81□□□□□ -0.2
PTPRN-214ENST00000477819 COL17A1Q9UMD9 1497 aaPredicted RBP13.8□□□□□ -0.2
PTPRN-214ENST00000477819 TOP2BQ02880 1626 aa13.77□□□□□ -0.21
PTPRN-214ENST00000477819 BIVM-ERCC5R4GMW8 1640 aa13.76□□□□□ -0.21
PTPRN-214ENST00000477819 ASXL2Q76L83 1435 aa13.74□□□□□ -0.21
PTPRN-214ENST00000477819 PTPRGP23470 1445 aa13.73□□□□□ -0.21
PTPRN-214ENST00000477819 GLI2P10070 1586 aa13.71□□□□□ -0.21
PTPRN-214ENST00000477819 KIAA0586Q9BVV6 1533 aa13.7□□□□□ -0.22
PTPRN-214ENST00000477819 ABCC2Q92887 1545 aa13.69□□□□□ -0.22
PTPRN-214ENST00000477819 PLB1Q6P1J6 1458 aa13.69□□□□□ -0.22
PTPRN-214ENST00000477819 ATXN8OSP0DMR3 200 aa13.68□□□□□ -0.22
PTPRN-214ENST00000477819 RBM42Q9BTD8 480 aaKnown RBP13.68□□□□□ -0.22
PTPRN-214ENST00000477819 CUL7Q14999 1698 aa13.67□□□□□ -0.22
PTPRN-214ENST00000477819 EPRSP07814 1512 aaKnown RBP13.64□□□□□ -0.23
PTPRN-214ENST00000477819 MAP3K4Q9Y6R4 1608 aa13.64□□□□□ -0.23
PTPRN-214ENST00000477819 LMTK3Q96Q04 1460 aa13.63□□□□□ -0.23
PTPRN-214ENST00000477819 TNIKQ9UKE5 1360 aa13.63□□□□□ -0.23
PTPRN-214ENST00000477819 ZBTB12Q9Y330 459 aaPredicted RBP13.62□□□□□ -0.23
PTPRN-214ENST00000477819 TEX14Q8IWB6 1497 aa13.61□□□□□ -0.23
PTPRN-214ENST00000477819 IGF1RP08069 1367 aa13.61□□□□□ -0.23
PTPRN-214ENST00000477819 POTEHQ6S545 545 aa13.59□□□□□ -0.23
PTPRN-214ENST00000477819 UHRF1BP1LA0JNW5 1464 aa13.59□□□□□ -0.23
PTPRN-214ENST00000477819 UACAQ9BZF9 1416 aa13.58□□□□□ -0.24
PTPRN-214ENST00000477819 SUPT5HO00267 1087 aaKnown RBP13.58□□□□□ -0.24
PTPRN-214ENST00000477819 CARMIL2Q6F5E8 1435 aa13.57□□□□□ -0.24
PTPRN-214ENST00000477819 ILDR2Q71H61 639 aa13.56□□□□□ -0.24
PTPRN-214ENST00000477819 KDM5BQ9UGL1 1544 aa13.55□□□□□ -0.24
PTPRN-214ENST00000477819 KIF21BO75037 1637 aa13.55□□□□□ -0.24
PTPRN-214ENST00000477819 ZCCHC11Q5TAX3 1644 aaKnown RBP13.54□□□□□ -0.24
PTPRN-214ENST00000477819 CSRNP3Q8WYN3 585 aa13.51□□□□□ -0.25
PTPRN-214ENST00000477819 DISP1Q96F81 1524 aa13.5□□□□□ -0.25
PTPRN-214ENST00000477819 PTPRMP28827 1452 aa13.5□□□□□ -0.25
PTPRN-214ENST00000477819 SOCS7O14512 581 aa13.5□□□□□ -0.25
PTPRN-214ENST00000477819 KCNH8Q96L42 1107 aa13.5□□□□□ -0.25
PTPRN-214ENST00000477819 IQGAP2Q13576 1575 aa13.49□□□□□ -0.25
PTPRN-214ENST00000477819 CD109Q6YHK3 1445 aa13.48□□□□□ -0.25
PTPRN-214ENST00000477819 KIF27Q86VH2 1401 aa13.48□□□□□ -0.25
PTPRN-214ENST00000477819 CARMIL1Q5VZK9 1371 aa13.48□□□□□ -0.25
PTPRN-214ENST00000477819 EHMT2Q96KQ7 1210 aa13.48□□□□□ -0.25
PTPRN-214ENST00000477819 WDR7Q9Y4E6 1490 aa13.48□□□□□ -0.25
PTPRN-214ENST00000477819 DISP3Q9P2K9 1392 aa13.47□□□□□ -0.25
PTPRN-214ENST00000477819 MAGI3Q5TCQ9 1506 aa13.46□□□□□ -0.25
PTPRN-214ENST00000477819 ADAMTSL3P82987 1691 aa13.45□□□□□ -0.26
PTPRN-214ENST00000477819 PCF11O94913 1555 aaKnown RBP13.44□□□□□ -0.26
PTPRN-214ENST00000477819 HSPA2P54652 639 aa13.43□□□□□ -0.26
PTPRN-214ENST00000477819 CERKQ8TCT0 537 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms