RNA–Protein interactions for RNA: ENST00000477702.1

LINC00173-202, long intergenic non-protein coding RNA 173, humanhuman

TSL 3

Gene LINC00173, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00173-202ENST00000477702 CEP164Q9UPV0 1460 aa12.2□□□□□ -0.46
LINC00173-202ENST00000477702 SSUH2Q9Y2M2 353 aa12.19□□□□□ -0.46
LINC00173-202ENST00000477702 MROH2BQ7Z745 1585 aa12.18□□□□□ -0.46
LINC00173-202ENST00000477702 ARHGEF11O15085 1522 aa12.18□□□□□ -0.46
LINC00173-202ENST00000477702 FANCD2Q9BXW9 1451 aa12.14□□□□□ -0.47
LINC00173-202ENST00000477702 URB2Q14146 1524 aaKnown RBP12.09□□□□□ -0.47
LINC00173-202ENST00000477702 ZNF608Q9ULD9 1512 aaPredicted RBP12.05□□□□□ -0.48
LINC00173-202ENST00000477702 ARAP1Q96P48 1450 aa12.04□□□□□ -0.48
LINC00173-202ENST00000477702 RBM42Q9BTD8 480 aaKnown RBP12.03□□□□□ -0.48
LINC00173-202ENST00000477702 FBXO3Q9UK99 471 aa12.03□□□□□ -0.48
LINC00173-202ENST00000477702 CFTRP13569 1480 aa12.01□□□□□ -0.49
LINC00173-202ENST00000477702 WIZO95785 1651 aa12□□□□□ -0.49
LINC00173-202ENST00000477702 VASPP50552 380 aaPredicted RBP11.96□□□□□ -0.49
LINC00173-202ENST00000477702 AKT1S1Q96B36 256 aa11.96□□□□□ -0.49
LINC00173-202ENST00000477702 IFT140Q96RY7 1462 aa11.95□□□□□ -0.5
LINC00173-202ENST00000477702 CHD1O14646 1710 aa11.91□□□□□ -0.5
LINC00173-202ENST00000477702 REM2Q8IYK8 340 aaPredicted RBP11.91□□□□□ -0.5
LINC00173-202ENST00000477702 EIF4G3O43432 1585 aaKnown RBP11.9□□□□□ -0.5
LINC00173-202ENST00000477702 RSF1Q96T23 1441 aaPredicted RBP11.9□□□□□ -0.5
LINC00173-202ENST00000477702 AQRO60306 1485 aaKnown RBP eCLIP11.89□□□□□ -0.511e-7■■■□□ 17.9
LINC00173-202ENST00000477702 RTN4Q9NQC3 1192 aaKnown RBP11.88□□□□□ -0.51
LINC00173-202ENST00000477702 IFNLR1Q8IU57 520 aaPredicted RBP11.86□□□□□ -0.51
LINC00173-202ENST00000477702 STAG3Q9UJ98 1225 aa11.85□□□□□ -0.51
LINC00173-202ENST00000477702 TOPBP1Q92547 1522 aa11.85□□□□□ -0.51
LINC00173-202ENST00000477702 CLEC11AQ9Y240 323 aa11.84□□□□□ -0.51
LINC00173-202ENST00000477702 ILDR1Q86SU0 546 aaPredicted RBP11.82□□□□□ -0.52
LINC00173-202ENST00000477702 SPDYE1Q8NFV5 336 aaPredicted RBP11.82□□□□□ -0.52
LINC00173-202ENST00000477702 PITPNM1O00562 1244 aa11.8□□□□□ -0.52
LINC00173-202ENST00000477702 TOP2AP11388 1531 aaKnown RBP11.78□□□□□ -0.52
LINC00173-202ENST00000477702 MIER1Q8N108 512 aa11.77□□□□□ -0.53
LINC00173-202ENST00000477702 PRDM2Q13029 1718 aa11.77□□□□□ -0.53
LINC00173-202ENST00000477702 TARBP1Q13395 1621 aaKnown RBP11.76□□□□□ -0.53
LINC00173-202ENST00000477702 AMER1Q5JTC6 1135 aaPredicted RBP11.76□□□□□ -0.53
LINC00173-202ENST00000477702 PLCD3Q8N3E9 789 aa11.76□□□□□ -0.53
LINC00173-202ENST00000477702 CLASP1Q7Z460 1538 aa11.76□□□□□ -0.53
LINC00173-202ENST00000477702 CHMP7Q8WUX9 453 aaPredicted RBP11.74□□□□□ -0.53
LINC00173-202ENST00000477702 TDRD9Q8NDG6 1382 aaKnown RBP11.74□□□□□ -0.53
LINC00173-202ENST00000477702 ABCC8Q09428 1581 aa11.73□□□□□ -0.53
LINC00173-202ENST00000477702 DNMBPQ6XZF7 1577 aa11.73□□□□□ -0.53
LINC00173-202ENST00000477702 SNAPC4Q5SXM2 1469 aa11.72□□□□□ -0.53
LINC00173-202ENST00000477702 RAD54L2Q9Y4B4 1467 aa11.71□□□□□ -0.53
LINC00173-202ENST00000477702 PRR29P0C7W0 189 aa11.71□□□□□ -0.53
LINC00173-202ENST00000477702 KLHL34Q8N239 644 aa11.71□□□□□ -0.53
LINC00173-202ENST00000477702 GAPVD1Q14C86 1478 aa11.7□□□□□ -0.54
LINC00173-202ENST00000477702 CCDC88BA6NC98 1476 aa11.7□□□□□ -0.54
LINC00173-202ENST00000477702 POLA1P09884 1462 aaPredicted RBP11.7□□□□□ -0.54
LINC00173-202ENST00000477702 SYNJ1O43426 1573 aa11.69□□□□□ -0.54
LINC00173-202ENST00000477702 CREBZFQ9NS37 354 aa11.66□□□□□ -0.54
LINC00173-202ENST00000477702 SOGA1O94964 1423 aa11.66□□□□□ -0.54
LINC00173-202ENST00000477702 SPOCK2Q92563 424 aa11.62□□□□□ -0.55
LINC00173-202ENST00000477702 MAGI1Q96QZ7 1491 aaPredicted RBP11.62□□□□□ -0.55
LINC00173-202ENST00000477702 KDM4FA0A1W2PPD8 638 aa11.61□□□□□ -0.55
LINC00173-202ENST00000477702 ERCC6L2Q5T890 1561 aa11.6□□□□□ -0.55
LINC00173-202ENST00000477702 SYNJ2O15056 1496 aa11.6□□□□□ -0.55
LINC00173-202ENST00000477702 PLEKHG5O94827 1062 aa11.59□□□□□ -0.55
LINC00173-202ENST00000477702 CHADLQ6NUI6 762 aa11.59□□□□□ -0.55
LINC00173-202ENST00000477702 GRIN2BQ13224 1484 aa11.58□□□□□ -0.56
LINC00173-202ENST00000477702 MNX1P50219 401 aaPredicted RBP11.57□□□□□ -0.56
LINC00173-202ENST00000477702 FGD5Q6ZNL6 1462 aa11.57□□□□□ -0.56
LINC00173-202ENST00000477702 KIF13AQ9H1H9 1805 aa11.54□□□□□ -0.56
LINC00173-202ENST00000477702 CHRDL2Q6WN34 429 aa11.54□□□□□ -0.56
LINC00173-202ENST00000477702 PKD2Q13563 968 aa11.53□□□□□ -0.56
LINC00173-202ENST00000477702 WDR97A6NE52 1622 aa11.53□□□□□ -0.56
LINC00173-202ENST00000477702 FAM69CQ0P6D2 419 aa11.52□□□□□ -0.57
LINC00173-202ENST00000477702 ZBTB47Q9UFB7 747 aaPredicted RBP11.51□□□□□ -0.57
LINC00173-202ENST00000477702 FXR2P51116 673 aaKnown RBP eCLIP11.5□□□□□ -0.57
LINC00173-202ENST00000477702 PRKAR2AP13861 404 aaKnown RBP11.49□□□□□ -0.57
LINC00173-202ENST00000477702 CEP170Q5SW79 1584 aa11.49□□□□□ -0.57
LINC00173-202ENST00000477702 NUBP1P53384 320 aa11.48□□□□□ -0.57
LINC00173-202ENST00000477702 PBRM1Q86U86 1689 aa11.47□□□□□ -0.57
LINC00173-202ENST00000477702 CUX1P39880 1505 aa11.47□□□□□ -0.57
LINC00173-202ENST00000477702 PIP4P2Q8N4L2 257 aa11.47□□□□□ -0.57
LINC00173-202ENST00000477702 CIZ1Q9ULV3 898 aaPredicted RBP11.45□□□□□ -0.58
LINC00173-202ENST00000477702 GRIN2AQ12879 1464 aa11.44□□□□□ -0.58
LINC00173-202ENST00000477702 ABCC10Q5T3U5 1492 aa11.44□□□□□ -0.58
LINC00173-202ENST00000477702 KDM6BO15054 1643 aa11.43□□□□□ -0.58
LINC00173-202ENST00000477702 RASEFQ8IZ41 740 aa11.42□□□□□ -0.58
LINC00173-202ENST00000477702 FARP1Q9Y4F1 1045 aaPredicted RBP11.42□□□□□ -0.58
LINC00173-202ENST00000477702 NUP160Q12769 1436 aa11.41□□□□□ -0.58
LINC00173-202ENST00000477702 NPM1P06748 294 aaKnown RBP eCLIP11.4□□□□□ -0.58
LINC00173-202ENST00000477702 SHROOM2Q13796 1616 aa11.39□□□□□ -0.59
LINC00173-202ENST00000477702 ECM2O94769 699 aaPredicted RBP11.39□□□□□ -0.59
LINC00173-202ENST00000477702 PRG4Q92954 1404 aaPredicted RBP11.39□□□□□ -0.59
LINC00173-202ENST00000477702 ABCA5Q8WWZ7 1642 aa11.38□□□□□ -0.59
LINC00173-202ENST00000477702 DIP2BQ9P265 1576 aa11.38□□□□□ -0.59
LINC00173-202ENST00000477702 DCAF8Q5TAQ9 597 aa11.37□□□□□ -0.59
LINC00173-202ENST00000477702 ADGRL1O94910 1474 aa11.37□□□□□ -0.59
LINC00173-202ENST00000477702 HECW2Q9P2P5 1572 aa11.37□□□□□ -0.59
LINC00173-202ENST00000477702 TSPOAP1O95153 1857 aa11.36□□□□□ -0.59
LINC00173-202ENST00000477702 ABCA10Q8WWZ4 1543 aa11.36□□□□□ -0.59
LINC00173-202ENST00000477702 ADAMTS12P58397 1594 aa11.35□□□□□ -0.59
LINC00173-202ENST00000477702 JPH4Q96JJ6 628 aa11.34□□□□□ -0.59
LINC00173-202ENST00000477702 MAPKBP1O60336 1514 aa11.34□□□□□ -0.59
LINC00173-202ENST00000477702 RGL2O15211 777 aa11.32□□□□□ -0.6
LINC00173-202ENST00000477702 FBXO41Q8TF61 875 aa11.32□□□□□ -0.6
LINC00173-202ENST00000477702 FAM212AQ96EL1 285 aa11.32□□□□□ -0.6
LINC00173-202ENST00000477702 GSE1Q14687 1217 aa11.31□□□□□ -0.6
LINC00173-202ENST00000477702 FHAD1B1AJZ9 1412 aa11.31□□□□□ -0.6
LINC00173-202ENST00000477702 TSPYL2Q9H2G4 693 aaPredicted RBP11.3□□□□□ -0.6
LINC00173-202ENST00000477702 ADCY10Q96PN6 1610 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms