RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 URB2Q14146 1524 aaKnown RBP12.43□□□□□ -0.42
VMA21-203ENST00000477649 CLIP1P30622 1438 aa12.41□□□□□ -0.42
VMA21-203ENST00000477649 MRC2Q9UBG0 1479 aa12.4□□□□□ -0.42
VMA21-203ENST00000477649 CARMIL1Q5VZK9 1371 aa12.39□□□□□ -0.43
VMA21-203ENST00000477649 PCGF6Q9BYE7 350 aa12.37□□□□□ -0.43
VMA21-203ENST00000477649 CUL7Q14999 1698 aa12.37□□□□□ -0.43
VMA21-203ENST00000477649 KIF21AQ7Z4S6 1674 aa12.36□□□□□ -0.43
VMA21-203ENST00000477649 RAD54L2Q9Y4B4 1467 aa12.35□□□□□ -0.43
VMA21-203ENST00000477649 WDR97A6NE52 1622 aa12.35□□□□□ -0.43
VMA21-203ENST00000477649 VPS8Q8N3P4 1428 aa12.35□□□□□ -0.43
VMA21-203ENST00000477649 WDR62O43379 1518 aa12.32□□□□□ -0.44
VMA21-203ENST00000477649 NCBP3Q53F19 620 aaKnown RBP12.32□□□□□ -0.44
VMA21-203ENST00000477649 ABCA5Q8WWZ7 1642 aa12.32□□□□□ -0.44
VMA21-203ENST00000477649 SP7Q8TDD2 431 aaPredicted RBP12.31□□□□□ -0.44
VMA21-203ENST00000477649 GAPVD1Q14C86 1478 aa12.31□□□□□ -0.44
VMA21-203ENST00000477649 IFT140Q96RY7 1462 aa12.3□□□□□ -0.44
VMA21-203ENST00000477649 TARBP1Q13395 1621 aaKnown RBP12.29□□□□□ -0.44
VMA21-203ENST00000477649 APLP2Q06481 763 aa12.28□□□□□ -0.44
VMA21-203ENST00000477649 CHRDL2Q6WN34 429 aa12.28□□□□□ -0.44
VMA21-203ENST00000477649 ERCC6Q03468 1493 aa12.27□□□□□ -0.44
VMA21-203ENST00000477649 TDRD9Q8NDG6 1382 aaKnown RBP12.24□□□□□ -0.45
VMA21-203ENST00000477649 EFCAB5A4FU69 1503 aa12.23□□□□□ -0.45
VMA21-203ENST00000477649 GRIN2BQ13224 1484 aa12.23□□□□□ -0.45
VMA21-203ENST00000477649 ARAP1Q96P48 1450 aa12.22□□□□□ -0.45
VMA21-203ENST00000477649 FHAD1B1AJZ9 1412 aa12.22□□□□□ -0.45
VMA21-203ENST00000477649 ARHGAP35Q9NRY4 1499 aa12.21□□□□□ -0.45
VMA21-203ENST00000477649 ABCB7O75027 752 aa12.21□□□□□ -0.45
VMA21-203ENST00000477649 HRCP23327 699 aa12.2□□□□□ -0.46
VMA21-203ENST00000477649 THOC2Q8NI27 1593 aaKnown RBP12.19□□□□□ -0.46
VMA21-203ENST00000477649 RBM42Q9BTD8 480 aaKnown RBP12.19□□□□□ -0.46
VMA21-203ENST00000477649 MAP3K1Q13233 1512 aa12.19□□□□□ -0.46
VMA21-203ENST00000477649 NPM3O75607 178 aaKnown RBP12.17□□□□□ -0.46
VMA21-203ENST00000477649 CTTNBP2Q8WZ74 1663 aa12.16□□□□□ -0.46
VMA21-203ENST00000477649 TRHP20396 242 aaPredicted RBP12.16□□□□□ -0.46
VMA21-203ENST00000477649 ZEB1P37275 1124 aaPredicted RBP12.16□□□□□ -0.46
VMA21-203ENST00000477649 PBRM1Q86U86 1689 aa12.16□□□□□ -0.46
VMA21-203ENST00000477649 ADAMTS12P58397 1594 aa12.15□□□□□ -0.46
VMA21-203ENST00000477649 AQRO60306 1485 aaKnown RBP eCLIP12.14□□□□□ -0.47
VMA21-203ENST00000477649 ZNF219Q9P2Y4 722 aaPredicted RBP12.14□□□□□ -0.47
VMA21-203ENST00000477649 FMN1Q68DA7 1419 aa12.13□□□□□ -0.47
VMA21-203ENST00000477649 MAGI1Q96QZ7 1491 aaPredicted RBP12.13□□□□□ -0.47
VMA21-203ENST00000477649 RANGAP1P46060 587 aaPredicted RBP12.12□□□□□ -0.47
VMA21-203ENST00000477649 ZNF608Q9ULD9 1512 aaPredicted RBP12.09□□□□□ -0.47
VMA21-203ENST00000477649 EIF4G3O43432 1585 aaKnown RBP12.09□□□□□ -0.47
VMA21-203ENST00000477649 SAMD9Q5K651 1589 aa12.09□□□□□ -0.47
VMA21-203ENST00000477649 FYCO1Q9BQS8 1478 aa12.08□□□□□ -0.47
VMA21-203ENST00000477649 PPARGC1BQ86YN6 1023 aaKnown RBP12.08□□□□□ -0.48
VMA21-203ENST00000477649 CASKIN1Q8WXD9 1431 aa12.08□□□□□ -0.48
VMA21-203ENST00000477649 KIAA0586Q9BVV6 1533 aa12.06□□□□□ -0.48
VMA21-203ENST00000477649 SYNJ2O15056 1496 aa12.06□□□□□ -0.48
VMA21-203ENST00000477649 SNAPC4Q5SXM2 1469 aa12.06□□□□□ -0.48
VMA21-203ENST00000477649 IQGAP2Q13576 1575 aa12.05□□□□□ -0.48
VMA21-203ENST00000477649 GRIN2AQ12879 1464 aa12.04□□□□□ -0.48
VMA21-203ENST00000477649 UGGT2Q9NYU1 1516 aa12.04□□□□□ -0.48
VMA21-203ENST00000477649 TIAM1Q13009 1591 aa12.04□□□□□ -0.48
VMA21-203ENST00000477649 FHOD3Q2V2M9 1422 aa12.03□□□□□ -0.48
VMA21-203ENST00000477649 RRBP1Q9P2E9 1410 aaKnown RBP12.01□□□□□ -0.49
VMA21-203ENST00000477649 LRRC9Q6ZRR7 1453 aa12.01□□□□□ -0.49
VMA21-203ENST00000477649 CHMP7Q8WUX9 453 aaPredicted RBP12□□□□□ -0.49
VMA21-203ENST00000477649 PCF11O94913 1555 aaKnown RBP12□□□□□ -0.49
VMA21-203ENST00000477649 CFAP43Q8NDM7 1665 aa12□□□□□ -0.49
VMA21-203ENST00000477649 NUP160Q12769 1436 aa11.98□□□□□ -0.49
VMA21-203ENST00000477649 KANK4Q5T7N3 995 aaPredicted RBP11.98□□□□□ -0.49
VMA21-203ENST00000477649 CCDC18Q5T9S5 1454 aa11.97□□□□□ -0.49
VMA21-203ENST00000477649 TTBK1Q5TCY1 1321 aaPredicted RBP11.96□□□□□ -0.49
VMA21-203ENST00000477649 P3H3Q8IVL6 736 aa11.96□□□□□ -0.49
VMA21-203ENST00000477649 CCNB3Q8WWL7 1395 aa11.95□□□□□ -0.5
VMA21-203ENST00000477649 CARMIL2Q6F5E8 1435 aa11.94□□□□□ -0.5
VMA21-203ENST00000477649 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.94□□□□□ -0.5
VMA21-203ENST00000477649 HECW1Q76N89 1606 aa11.93□□□□□ -0.5
VMA21-203ENST00000477649 KIAA0556O60303 1618 aa11.91□□□□□ -0.5
VMA21-203ENST00000477649 CCER1Q8TC90 406 aaPredicted RBP11.91□□□□□ -0.5
VMA21-203ENST00000477649 MTUS2Q5JR59 1369 aa11.91□□□□□ -0.5
VMA21-203ENST00000477649 DISP1Q96F81 1524 aa11.91□□□□□ -0.5
VMA21-203ENST00000477649 CEP170Q5SW79 1584 aa11.9□□□□□ -0.5
VMA21-203ENST00000477649 ATP1B4Q9UN42 357 aaPredicted RBP11.9□□□□□ -0.5
VMA21-203ENST00000477649 EHBP1L1Q8N3D4 1523 aa11.9□□□□□ -0.5
VMA21-203ENST00000477649 CLSPNQ9HAW4 1339 aa11.88□□□□□ -0.51
VMA21-203ENST00000477649 JPH4Q96JJ6 628 aa11.88□□□□□ -0.51
VMA21-203ENST00000477649 SLC4A2P04920 1241 aa11.87□□□□□ -0.51
VMA21-203ENST00000477649 FBLN2P98095 1184 aa11.87□□□□□ -0.51
VMA21-203ENST00000477649 HNRNPUL2Q1KMD3 747 aaKnown RBP11.86□□□□□ -0.51
VMA21-203ENST00000477649 CDK11AQ9UQ88 783 aaPredicted RBP11.86□□□□□ -0.51
VMA21-203ENST00000477649 EPRSP07814 1512 aaKnown RBP11.86□□□□□ -0.51
VMA21-203ENST00000477649 PHLDB1Q86UU1 1377 aa11.84□□□□□ -0.51
VMA21-203ENST00000477649 SUPT6HQ7KZ85 1726 aaKnown RBP11.83□□□□□ -0.52
VMA21-203ENST00000477649 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.83□□□□□ -0.52
VMA21-203ENST00000477649 RAPGEF6Q8TEU7 1601 aa11.82□□□□□ -0.52
VMA21-203ENST00000477649 ARHGEF11O15085 1522 aa11.81□□□□□ -0.52
VMA21-203ENST00000477649 MYOM3Q5VTT5 1437 aa11.81□□□□□ -0.52
VMA21-203ENST00000477649 FGD6Q6ZV73 1430 aa11.81□□□□□ -0.52
VMA21-203ENST00000477649 NCOA2Q15596 1464 aa11.81□□□□□ -0.52
VMA21-203ENST00000477649 MIA2Q96PC5 1412 aa11.8□□□□□ -0.52
VMA21-203ENST00000477649 HAX1O00165 279 aa11.8□□□□□ -0.52
VMA21-203ENST00000477649 PIP4P2Q8N4L2 257 aa11.8□□□□□ -0.52
VMA21-203ENST00000477649 ACIN1Q9UKV3 1341 aaKnown RBP11.8□□□□□ -0.52
VMA21-203ENST00000477649 NUP153P49790 1475 aaKnown RBP11.78□□□□□ -0.52
VMA21-203ENST00000477649 LRRIQ1Q96JM4 1722 aa11.77□□□□□ -0.53
VMA21-203ENST00000477649 SHROOM2Q13796 1616 aa11.76□□□□□ -0.53
VMA21-203ENST00000477649 FAM50AQ14320 339 aaKnown RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms