RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 LAMC3Q9Y6N6 1575 aa10.79□□□□□ -0.68
LDB3-206ENST00000477489 MKRN4PQ13434 485 aaPredicted RBP10.77□□□□□ -0.69
LDB3-206ENST00000477489 KIF21AQ7Z4S6 1674 aa10.76□□□□□ -0.69
LDB3-206ENST00000477489 CHRDL2Q6WN34 429 aa10.74□□□□□ -0.69
LDB3-206ENST00000477489 CUX1P39880 1505 aa10.73□□□□□ -0.69
LDB3-206ENST00000477489 KIF21BO75037 1637 aa10.73□□□□□ -0.69
LDB3-206ENST00000477489 REM2Q8IYK8 340 aaPredicted RBP10.72□□□□□ -0.69
LDB3-206ENST00000477489 SPDYE2BA6NHP3 402 aa10.71□□□□□ -0.69
LDB3-206ENST00000477489 SPDYE6P0CI01 402 aa10.71□□□□□ -0.69
LDB3-206ENST00000477489 SPDYE2Q495Y8 402 aa10.71□□□□□ -0.69
LDB3-206ENST00000477489 SOGA1O94964 1423 aa10.7□□□□□ -0.7
LDB3-206ENST00000477489 FANCD2Q9BXW9 1451 aa10.69□□□□□ -0.7
LDB3-206ENST00000477489 CEP164Q9UPV0 1460 aa10.69□□□□□ -0.7
LDB3-206ENST00000477489 LOC105371045A0A1W2PR82 267 aa10.69□□□□□ -0.7
LDB3-206ENST00000477489 GOLGA3Q08378 1498 aa10.68□□□□□ -0.7
LDB3-206ENST00000477489 DNMBPQ6XZF7 1577 aa10.68□□□□□ -0.7
LDB3-206ENST00000477489 PDS5BQ9NTI5 1447 aa10.67□□□□□ -0.7
LDB3-206ENST00000477489 TNIKQ9UKE5 1360 aa10.66□□□□□ -0.7
LDB3-206ENST00000477489 ERICH3Q5RHP9 1530 aa10.66□□□□□ -0.7
LDB3-206ENST00000477489 KIF27Q86VH2 1401 aa10.66□□□□□ -0.7
LDB3-206ENST00000477489 FAM9AQ8IZU1 332 aaPredicted RBP10.65□□□□□ -0.7
LDB3-206ENST00000477489 RIMBP3CA6NJZ7 1639 aa10.65□□□□□ -0.7
LDB3-206ENST00000477489 RIMBP3BA6NNM3 1639 aa10.65□□□□□ -0.7
LDB3-206ENST00000477489 RIMBP3Q9UFD9 1639 aa10.65□□□□□ -0.7
LDB3-206ENST00000477489 RUSC2Q8N2Y8 1516 aa10.62□□□□□ -0.71
LDB3-206ENST00000477489 PITPNM1O00562 1244 aa10.61□□□□□ -0.71
LDB3-206ENST00000477489 TOPBP1Q92547 1522 aa10.6□□□□□ -0.71
LDB3-206ENST00000477489 ZNF692Q9BU19 519 aaPredicted RBP10.6□□□□□ -0.71
LDB3-206ENST00000477489 FGD5Q6ZNL6 1462 aa10.6□□□□□ -0.71
LDB3-206ENST00000477489 PRXQ9BXM0 1461 aa10.6□□□□□ -0.71
LDB3-206ENST00000477489 WDR62O43379 1518 aa10.59□□□□□ -0.71
LDB3-206ENST00000477489 SSUH2Q9Y2M2 353 aa10.59□□□□□ -0.71
LDB3-206ENST00000477489 MRC2Q9UBG0 1479 aa10.58□□□□□ -0.72
LDB3-206ENST00000477489 ABCA10Q8WWZ4 1543 aa10.58□□□□□ -0.72
LDB3-206ENST00000477489 CEP162Q5TB80 1403 aa10.55□□□□□ -0.72
LDB3-206ENST00000477489 POLA1P09884 1462 aaPredicted RBP10.55□□□□□ -0.72
LDB3-206ENST00000477489 WDR97A6NE52 1622 aa10.55□□□□□ -0.72
LDB3-206ENST00000477489 ARHGEF11O15085 1522 aa10.53□□□□□ -0.72
LDB3-206ENST00000477489 URB2Q14146 1524 aaKnown RBP10.53□□□□□ -0.72
LDB3-206ENST00000477489 PIP4P2Q8N4L2 257 aa10.52□□□□□ -0.73
LDB3-206ENST00000477489 CUL7Q14999 1698 aa10.52□□□□□ -0.73
LDB3-206ENST00000477489 RAPGEF2Q9Y4G8 1499 aa10.51□□□□□ -0.73
LDB3-206ENST00000477489 UBTFP17480 764 aaKnown RBP10.5□□□□□ -0.73
LDB3-206ENST00000477489 FXR2P51116 673 aaKnown RBP eCLIP10.49□□□□□ -0.73
LDB3-206ENST00000477489 SPDYE1Q8NFV5 336 aaPredicted RBP10.49□□□□□ -0.73
LDB3-206ENST00000477489 ABCA5Q8WWZ7 1642 aa10.48□□□□□ -0.73
LDB3-206ENST00000477489 IGF1RP08069 1367 aa10.48□□□□□ -0.73
LDB3-206ENST00000477489 TRIM26Q12899 539 aaPredicted RBP10.46□□□□□ -0.73
LDB3-206ENST00000477489 CLIP1P30622 1438 aa10.46□□□□□ -0.74
LDB3-206ENST00000477489 TARBP1Q13395 1621 aaKnown RBP10.46□□□□□ -0.74
LDB3-206ENST00000477489 CLEC11AQ9Y240 323 aa10.45□□□□□ -0.74
LDB3-206ENST00000477489 CARMIL1Q5VZK9 1371 aa10.44□□□□□ -0.74
LDB3-206ENST00000477489 CYB5RLQ6IPT4 315 aa10.44□□□□□ -0.74
LDB3-206ENST00000477489 IFT140Q96RY7 1462 aa10.42□□□□□ -0.74
LDB3-206ENST00000477489 RAD54L2Q9Y4B4 1467 aa10.42□□□□□ -0.74
LDB3-206ENST00000477489 VPS8Q8N3P4 1428 aa10.42□□□□□ -0.74
LDB3-206ENST00000477489 GAPVD1Q14C86 1478 aa10.41□□□□□ -0.74
LDB3-206ENST00000477489 ARAP1Q96P48 1450 aa10.39□□□□□ -0.75
LDB3-206ENST00000477489 EFCAB5A4FU69 1503 aa10.38□□□□□ -0.75
LDB3-206ENST00000477489 CTTNBP2Q8WZ74 1663 aa10.38□□□□□ -0.75
LDB3-206ENST00000477489 PBRM1Q86U86 1689 aa10.38□□□□□ -0.75
LDB3-206ENST00000477489 GRIN2BQ13224 1484 aa10.35□□□□□ -0.75
LDB3-206ENST00000477489 SPDYE4A6NLX3 237 aa10.34□□□□□ -0.75
LDB3-206ENST00000477489 ILDR1Q86SU0 546 aaPredicted RBP10.34□□□□□ -0.75
LDB3-206ENST00000477489 PCGF6Q9BYE7 350 aa10.34□□□□□ -0.75
LDB3-206ENST00000477489 FHAD1B1AJZ9 1412 aa10.33□□□□□ -0.76
LDB3-206ENST00000477489 MAP3K1Q13233 1512 aa10.33□□□□□ -0.76
LDB3-206ENST00000477489 PRKAR2AP13861 404 aaKnown RBP10.33□□□□□ -0.76
LDB3-206ENST00000477489 ADAMTS12P58397 1594 aa10.33□□□□□ -0.76
LDB3-206ENST00000477489 ARHGAP35Q9NRY4 1499 aa10.32□□□□□ -0.76
LDB3-206ENST00000477489 TDRD9Q8NDG6 1382 aaKnown RBP10.31□□□□□ -0.76
LDB3-206ENST00000477489 PRR29P0C7W0 189 aa10.31□□□□□ -0.76
LDB3-206ENST00000477489 CHD1O14646 1710 aa10.3□□□□□ -0.76
LDB3-206ENST00000477489 AQRO60306 1485 aaKnown RBP eCLIP10.29□□□□□ -0.76
LDB3-206ENST00000477489 MAGI1Q96QZ7 1491 aaPredicted RBP10.29□□□□□ -0.76
LDB3-206ENST00000477489 ZNF608Q9ULD9 1512 aaPredicted RBP10.28□□□□□ -0.76
LDB3-206ENST00000477489 EIF4G3O43432 1585 aaKnown RBP10.28□□□□□ -0.76
LDB3-206ENST00000477489 HAX1O00165 279 aa10.28□□□□□ -0.76
LDB3-206ENST00000477489 SAMD9Q5K651 1589 aa10.27□□□□□ -0.76
LDB3-206ENST00000477489 FMN1Q68DA7 1419 aa10.24□□□□□ -0.77
LDB3-206ENST00000477489 CHADLQ6NUI6 762 aa10.24□□□□□ -0.77
LDB3-206ENST00000477489 SP7Q8TDD2 431 aaPredicted RBP10.24□□□□□ -0.77
LDB3-206ENST00000477489 FYCO1Q9BQS8 1478 aa10.23□□□□□ -0.77
LDB3-206ENST00000477489 IQGAP2Q13576 1575 aa10.23□□□□□ -0.77
LDB3-206ENST00000477489 CFAP43Q8NDM7 1665 aa10.22□□□□□ -0.77
LDB3-206ENST00000477489 HRCP23327 699 aa10.22□□□□□ -0.77
LDB3-206ENST00000477489 TIAM1Q13009 1591 aa10.22□□□□□ -0.77
LDB3-206ENST00000477489 CASKIN1Q8WXD9 1431 aa10.21□□□□□ -0.78
LDB3-206ENST00000477489 SYNJ2O15056 1496 aa10.21□□□□□ -0.78
LDB3-206ENST00000477489 KIAA0586Q9BVV6 1533 aa10.21□□□□□ -0.78
LDB3-206ENST00000477489 UGGT2Q9NYU1 1516 aa10.21□□□□□ -0.78
LDB3-206ENST00000477489 ZEB1P37275 1124 aaPredicted RBP10.2□□□□□ -0.78
LDB3-206ENST00000477489 GRIN2AQ12879 1464 aa10.2□□□□□ -0.78
LDB3-206ENST00000477489 SNAPC4Q5SXM2 1469 aa10.2□□□□□ -0.78
LDB3-206ENST00000477489 STAG3Q9UJ98 1225 aa10.2□□□□□ -0.78
LDB3-206ENST00000477489 PCF11O94913 1555 aaKnown RBP10.18□□□□□ -0.78
LDB3-206ENST00000477489 EVX2Q03828 476 aa10.16□□□□□ -0.78
LDB3-206ENST00000477489 C19orf67A6NJJ6 358 aa10.15□□□□□ -0.78
LDB3-206ENST00000477489 CCDC18Q5T9S5 1454 aa10.15□□□□□ -0.78
LDB3-206ENST00000477489 NUP160Q12769 1436 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms