RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 ZNF326Q5BKZ1 582 aaKnown RBP7.19□□□□□ -1.26
CCDC39-204ENST00000476379 RAPGEF2Q9Y4G8 1499 aa7.17□□□□□ -1.26
CCDC39-204ENST00000476379 FKBP8Q14318 412 aa7.17□□□□□ -1.26
CCDC39-204ENST00000476379 ZNF777Q9ULD5 760 aaPredicted RBP7.17□□□□□ -1.26
CCDC39-204ENST00000476379 MYT1LQ9UL68 1186 aa7.16□□□□□ -1.26
CCDC39-204ENST00000476379 HMGXB3Q12766 1538 aa7.16□□□□□ -1.26
CCDC39-204ENST00000476379 POLA1P09884 1462 aaPredicted RBP7.16□□□□□ -1.26
CCDC39-204ENST00000476379 CARMIL1Q5VZK9 1371 aa7.15□□□□□ -1.27
CCDC39-204ENST00000476379 TOPBP1Q92547 1522 aa7.15□□□□□ -1.27
CCDC39-204ENST00000476379 KIF21AQ7Z4S6 1674 aa7.13□□□□□ -1.27
CCDC39-204ENST00000476379 SALL2Q9Y467 1007 aaPredicted RBP7.13□□□□□ -1.27
CCDC39-204ENST00000476379 IGF1RP08069 1367 aa7.12□□□□□ -1.27
CCDC39-204ENST00000476379 KIF27Q86VH2 1401 aa7.12□□□□□ -1.27
CCDC39-204ENST00000476379 SIN3AQ96ST3 1273 aa7.12□□□□□ -1.27
CCDC39-204ENST00000476379 KANK4Q5T7N3 995 aaPredicted RBP7.11□□□□□ -1.27
CCDC39-204ENST00000476379 CHIC2Q9UKJ5 165 aa7.11□□□□□ -1.27
CCDC39-204ENST00000476379 PEG3Q9GZU2 1588 aa7.11□□□□□ -1.27
CCDC39-204ENST00000476379 TRHP20396 242 aaPredicted RBP7.11□□□□□ -1.27
CCDC39-204ENST00000476379 CEP162Q5TB80 1403 aa7.1□□□□□ -1.27
CCDC39-204ENST00000476379 FHOD3Q2V2M9 1422 aa7.09□□□□□ -1.27
CCDC39-204ENST00000476379 JPH4Q96JJ6 628 aa7.08□□□□□ -1.28
CCDC39-204ENST00000476379 GAPVD1Q14C86 1478 aa7.08□□□□□ -1.28
CCDC39-204ENST00000476379 MRC2Q9UBG0 1479 aa7.08□□□□□ -1.28
CCDC39-204ENST00000476379 FAM9BQ8IZU0 186 aa7.07□□□□□ -1.28
CCDC39-204ENST00000476379 CLIP1P30622 1438 aa7.06□□□□□ -1.28
CCDC39-204ENST00000476379 BCL11AQ9H165 835 aa7.06□□□□□ -1.28
CCDC39-204ENST00000476379 SNAPC4Q5SXM2 1469 aa7.06□□□□□ -1.28
CCDC39-204ENST00000476379 HNRNPUQ00839 825 aaKnown RBP eCLIP7.05□□□□□ -1.28
CCDC39-204ENST00000476379 OSCARQ8IYS5 282 aa7.04□□□□□ -1.28
CCDC39-204ENST00000476379 ANP32CO43423 234 aa7.03□□□□□ -1.28
CCDC39-204ENST00000476379 NPM2Q86SE8 214 aaKnown RBP7.03□□□□□ -1.28
CCDC39-204ENST00000476379 NBR1Q14596 966 aa7.03□□□□□ -1.28
CCDC39-204ENST00000476379 SUPT16HQ9Y5B9 1047 aaKnown RBP7.03□□□□□ -1.28
CCDC39-204ENST00000476379 LAMC3Q9Y6N6 1575 aa7.02□□□□□ -1.29
CCDC39-204ENST00000476379 RRP7BPQ9NSQ0 103 aa7□□□□□ -1.29
CCDC39-204ENST00000476379 GOLGA3Q08378 1498 aa7□□□□□ -1.29
CCDC39-204ENST00000476379 ZNF644Q9H582 1327 aaPredicted RBP7□□□□□ -1.29
CCDC39-204ENST00000476379 MLECQ14165 292 aa6.99□□□□□ -1.29
CCDC39-204ENST00000476379 TOP2BQ02880 1626 aa6.99□□□□□ -1.29
CCDC39-204ENST00000476379 FOXD1Q16676 465 aa6.99□□□□□ -1.29
CCDC39-204ENST00000476379 DNMBPQ6XZF7 1577 aa6.98□□□□□ -1.29
CCDC39-204ENST00000476379 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.98□□□□□ -1.29
CCDC39-204ENST00000476379 SLC4A1APQ9BWU0 796 aaKnown RBP6.98□□□□□ -1.29
CCDC39-204ENST00000476379 NPM1P06748 294 aaKnown RBP eCLIP6.95□□□□□ -1.3
CCDC39-204ENST00000476379 ARAP1Q96P48 1450 aa6.95□□□□□ -1.3
CCDC39-204ENST00000476379 PRG4Q92954 1404 aaPredicted RBP6.95□□□□□ -1.3
CCDC39-204ENST00000476379 GRIN2BQ13224 1484 aa6.95□□□□□ -1.3
CCDC39-204ENST00000476379 KDM2AQ9Y2K7 1162 aa6.94□□□□□ -1.3
CCDC39-204ENST00000476379 MTUS2Q5JR59 1369 aa6.94□□□□□ -1.3
CCDC39-204ENST00000476379 TNIKQ9UKE5 1360 aa6.94□□□□□ -1.3
CCDC39-204ENST00000476379 IFT140Q96RY7 1462 aa6.94□□□□□ -1.3
CCDC39-204ENST00000476379 B4GALNT3Q6L9W6 998 aa6.93□□□□□ -1.3
CCDC39-204ENST00000476379 ARXQ96QS3 562 aa6.93□□□□□ -1.3
CCDC39-204ENST00000476379 PLB1Q6P1J6 1458 aa6.93□□□□□ -1.3
CCDC39-204ENST00000476379 HNRNPMP52272 730 aaKnown RBP eCLIP6.93□□□□□ -1.3
CCDC39-204ENST00000476379 RTN4Q9NQC3 1192 aaKnown RBP6.93□□□□□ -1.3
CCDC39-204ENST00000476379 CDK11AQ9UQ88 783 aaPredicted RBP6.93□□□□□ -1.3
CCDC39-204ENST00000476379 TSHZ2Q9NRE2 1034 aa6.92□□□□□ -1.3
CCDC39-204ENST00000476379 ABCA10Q8WWZ4 1543 aa6.92□□□□□ -1.3
CCDC39-204ENST00000476379 EIF4G3O43432 1585 aaKnown RBP6.92□□□□□ -1.3
CCDC39-204ENST00000476379 ERCC6L2Q5T890 1561 aa6.92□□□□□ -1.3
CCDC39-204ENST00000476379 TONSLQ96HA7 1378 aa6.91□□□□□ -1.3
CCDC39-204ENST00000476379 PLEKHD1A6NEE1 506 aa6.91□□□□□ -1.3
CCDC39-204ENST00000476379 FAM69CQ0P6D2 419 aa6.9□□□□□ -1.3
CCDC39-204ENST00000476379 MRS2Q9HD23 443 aa6.9□□□□□ -1.3
CCDC39-204ENST00000476379 PRXQ9BXM0 1461 aa6.9□□□□□ -1.3
CCDC39-204ENST00000476379 PTPRGP23470 1445 aa6.9□□□□□ -1.3
CCDC39-204ENST00000476379 THOC2Q8NI27 1593 aaKnown RBP6.9□□□□□ -1.31
CCDC39-204ENST00000476379 FHAD1B1AJZ9 1412 aa6.9□□□□□ -1.31
CCDC39-204ENST00000476379 ARHGAP35Q9NRY4 1499 aa6.9□□□□□ -1.31
CCDC39-204ENST00000476379 RAPGEF3O95398 923 aa6.89□□□□□ -1.31
CCDC39-204ENST00000476379 CDK13Q14004 1512 aaKnown RBP6.89□□□□□ -1.31
CCDC39-204ENST00000476379 CFDP1Q9UEE9 299 aaPredicted RBP6.88□□□□□ -1.31
CCDC39-204ENST00000476379 WDR62O43379 1518 aa6.88□□□□□ -1.31
CCDC39-204ENST00000476379 GRIN2AQ12879 1464 aa6.88□□□□□ -1.31
CCDC39-204ENST00000476379 AFAP1Q8N556 730 aa6.88□□□□□ -1.31
CCDC39-204ENST00000476379 CLSPNQ9HAW4 1339 aa6.87□□□□□ -1.31
CCDC39-204ENST00000476379 PRDM2Q13029 1718 aa6.87□□□□□ -1.31
CCDC39-204ENST00000476379 NUTM2DQ5VT03 806 aaPredicted RBP6.87□□□□□ -1.31
CCDC39-204ENST00000476379 PLEKHG5O94827 1062 aa6.87□□□□□ -1.31
CCDC39-204ENST00000476379 RBM19Q9Y4C8 960 aaKnown RBP6.87□□□□□ -1.31
CCDC39-204ENST00000476379 ARID4BQ4LE39 1312 aaPredicted RBP6.87□□□□□ -1.31
CCDC39-204ENST00000476379 ANP32EQ9BTT0 268 aa6.86□□□□□ -1.31
CCDC39-204ENST00000476379 TARBP1Q13395 1621 aaKnown RBP6.86□□□□□ -1.31
CCDC39-204ENST00000476379 RGL3Q3MIN7 710 aa6.86□□□□□ -1.31
CCDC39-204ENST00000476379 CHGAP10645 457 aaKnown RBP6.86□□□□□ -1.31
CCDC39-204ENST00000476379 EEA1Q15075 1411 aa6.85□□□□□ -1.31
CCDC39-204ENST00000476379 BIVM-ERCC5R4GMW8 1640 aa6.85□□□□□ -1.31
CCDC39-204ENST00000476379 KIF21BO75037 1637 aa6.85□□□□□ -1.31
CCDC39-204ENST00000476379 RTL5Q5HYW3 569 aaPredicted RBP6.85□□□□□ -1.31
CCDC39-204ENST00000476379 SYNJ2O15056 1496 aa6.84□□□□□ -1.31
CCDC39-204ENST00000476379 GGT6Q6P531 493 aa6.84□□□□□ -1.31
CCDC39-204ENST00000476379 SRCAPQ6ZRS2 3230 aa6.84□□□□□ -1.31
CCDC39-204ENST00000476379 LAS1LQ9Y4W2 734 aaKnown RBP6.83□□□□□ -1.32
CCDC39-204ENST00000476379 VPS8Q8N3P4 1428 aa6.83□□□□□ -1.32
CCDC39-204ENST00000476379 DAXXQ9UER7 740 aaPredicted RBP6.83□□□□□ -1.32
CCDC39-204ENST00000476379 PHLDB1Q86UU1 1377 aa6.83□□□□□ -1.32
CCDC39-204ENST00000476379 RAB3GAP2Q9H2M9 1393 aa6.82□□□□□ -1.32
CCDC39-204ENST00000476379 CCDC136Q96JN2 1154 aa6.82□□□□□ -1.32
CCDC39-204ENST00000476379 CEP170Q5SW79 1584 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms