RNA–Protein interactions for RNA: ENST00000473778.5

C9orf3-214, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 2,396 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-214ENST00000473778 CARMIL1Q5VZK9 1371 aa16.1■□□□□ 0.17
C9orf3-214ENST00000473778 ITGAEP38570 1179 aa16.09■□□□□ 0.17
C9orf3-214ENST00000473778 TIAM1Q13009 1591 aa16.09■□□□□ 0.17
C9orf3-214ENST00000473778 CC2D2AQ9P2K1 1620 aa16.07■□□□□ 0.16
C9orf3-214ENST00000473778 RAB3GAP2Q9H2M9 1393 aa16.02■□□□□ 0.16
C9orf3-214ENST00000473778 MAPKBP1O60336 1514 aa16.02■□□□□ 0.16
C9orf3-214ENST00000473778 PHLDB1Q86UU1 1377 aa16.02■□□□□ 0.15
C9orf3-214ENST00000473778 LRRC9Q6ZRR7 1453 aa16.02■□□□□ 0.15
C9orf3-214ENST00000473778 MAP3K1Q13233 1512 aa16.02■□□□□ 0.15
C9orf3-214ENST00000473778 FANCD2Q9BXW9 1451 aa16.01■□□□□ 0.15
C9orf3-214ENST00000473778 RAD54L2Q9Y4B4 1467 aa16.01■□□□□ 0.15
C9orf3-214ENST00000473778 PCF11O94913 1555 aaKnown RBP16■□□□□ 0.15
C9orf3-214ENST00000473778 P3H3Q8IVL6 736 aa15.99■□□□□ 0.15
C9orf3-214ENST00000473778 CFAP43Q8NDM7 1665 aa15.97■□□□□ 0.15
C9orf3-214ENST00000473778 NESP48681 1621 aa15.96■□□□□ 0.15
C9orf3-214ENST00000473778 POLA1P09884 1462 aaPredicted RBP15.95■□□□□ 0.14
C9orf3-214ENST00000473778 PIAS4Q8N2W9 510 aaPredicted RBP15.95■□□□□ 0.14
C9orf3-214ENST00000473778 FHOD3Q2V2M9 1422 aa15.95■□□□□ 0.14
C9orf3-214ENST00000473778 DNMBPQ6XZF7 1577 aa15.95■□□□□ 0.14
C9orf3-214ENST00000473778 ABCA10Q8WWZ4 1543 aa15.93■□□□□ 0.14
C9orf3-214ENST00000473778 TOPBP1Q92547 1522 aa15.93■□□□□ 0.14
C9orf3-214ENST00000473778 FHAD1B1AJZ9 1412 aa15.92■□□□□ 0.14
C9orf3-214ENST00000473778 SETD5Q9C0A6 1442 aa15.91■□□□□ 0.14
C9orf3-214ENST00000473778 FAM50AQ14320 339 aaKnown RBP15.89■□□□□ 0.13
C9orf3-214ENST00000473778 ATP1B4Q9UN42 357 aaPredicted RBP15.88■□□□□ 0.13
C9orf3-214ENST00000473778 SIN3AQ96ST3 1273 aa15.87■□□□□ 0.13
C9orf3-214ENST00000473778 CTTNBP2Q8WZ74 1663 aa15.86■□□□□ 0.13
C9orf3-214ENST00000473778 WDR97A6NE52 1622 aa15.86■□□□□ 0.13
C9orf3-214ENST00000473778 FYCO1Q9BQS8 1478 aa15.86■□□□□ 0.13
C9orf3-214ENST00000473778 KCNH8Q96L42 1107 aa15.84■□□□□ 0.13
C9orf3-214ENST00000473778 CUL7Q14999 1698 aa15.84■□□□□ 0.13
C9orf3-214ENST00000473778 CASKIN1Q8WXD9 1431 aa15.84■□□□□ 0.13
C9orf3-214ENST00000473778 EFCAB5A4FU69 1503 aa15.83■□□□□ 0.13
C9orf3-214ENST00000473778 URB2Q14146 1524 aaKnown RBP15.83■□□□□ 0.12
C9orf3-214ENST00000473778 LRRIQ1Q96JM4 1722 aa15.82■□□□□ 0.12
C9orf3-214ENST00000473778 SNAPC4Q5SXM2 1469 aa15.81■□□□□ 0.12
C9orf3-214ENST00000473778 AQRO60306 1485 aaKnown RBP eCLIP15.8■□□□□ 0.12
C9orf3-214ENST00000473778 TDRD9Q8NDG6 1382 aaKnown RBP15.78■□□□□ 0.12
C9orf3-214ENST00000473778 ABCA5Q8WWZ7 1642 aa15.77■□□□□ 0.11
C9orf3-214ENST00000473778 PTPRKQ15262 1439 aa15.75■□□□□ 0.11
C9orf3-214ENST00000473778 FGD6Q6ZV73 1430 aa15.75■□□□□ 0.11
C9orf3-214ENST00000473778 SAMD9Q5K651 1589 aa15.75■□□□□ 0.11
C9orf3-214ENST00000473778 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.74■□□□□ 0.11
C9orf3-214ENST00000473778 SUPT16HQ9Y5B9 1047 aaKnown RBP15.74■□□□□ 0.11
C9orf3-214ENST00000473778 FMN1Q68DA7 1419 aa15.74■□□□□ 0.11
C9orf3-214ENST00000473778 LAMC3Q9Y6N6 1575 aa15.73■□□□□ 0.11
C9orf3-214ENST00000473778 HIRIP3Q9BW71 556 aaPredicted RBP15.73■□□□□ 0.11
C9orf3-214ENST00000473778 DDX10Q13206 875 aaKnown RBP15.71■□□□□ 0.11
C9orf3-214ENST00000473778 GAPVD1Q14C86 1478 aa15.7■□□□□ 0.1
C9orf3-214ENST00000473778 GRIN2BQ13224 1484 aa15.69■□□□□ 0.1
C9orf3-214ENST00000473778 MTUS2Q5JR59 1369 aa15.69■□□□□ 0.1
C9orf3-214ENST00000473778 PPP1R15AO75807 674 aaPredicted RBP15.68■□□□□ 0.1
C9orf3-214ENST00000473778 CCDC18Q5T9S5 1454 aa15.68■□□□□ 0.1
C9orf3-214ENST00000473778 KIF21AQ7Z4S6 1674 aa15.68■□□□□ 0.1
C9orf3-214ENST00000473778 NCOA2Q15596 1464 aa15.67■□□□□ 0.1
C9orf3-214ENST00000473778 PTPN23Q9H3S7 1636 aa15.67■□□□□ 0.1
C9orf3-214ENST00000473778 MAGI3Q5TCQ9 1506 aa15.66■□□□□ 0.1
C9orf3-214ENST00000473778 HFM1A2PYH4 1435 aa15.66■□□□□ 0.1
C9orf3-214ENST00000473778 TIMELESSQ9UNS1 1208 aa15.64■□□□□ 0.09
C9orf3-214ENST00000473778 TARBP1Q13395 1621 aaKnown RBP15.64■□□□□ 0.09
C9orf3-214ENST00000473778 NAIPQ13075 1403 aa15.63■□□□□ 0.09
C9orf3-214ENST00000473778 MYOM3Q5VTT5 1437 aa15.63■□□□□ 0.09
C9orf3-214ENST00000473778 UACAQ9BZF9 1416 aa15.62■□□□□ 0.09
C9orf3-214ENST00000473778 SUPT6HQ7KZ85 1726 aaKnown RBP15.61■□□□□ 0.09
C9orf3-214ENST00000473778 MSH5O43196 834 aa15.61■□□□□ 0.09
C9orf3-214ENST00000473778 THOC2Q8NI27 1593 aaKnown RBP15.6■□□□□ 0.09
C9orf3-214ENST00000473778 ARHGEF11O15085 1522 aa15.6■□□□□ 0.09
C9orf3-214ENST00000473778 KDM5BQ9UGL1 1544 aa15.6■□□□□ 0.09
C9orf3-214ENST00000473778 PDS5BQ9NTI5 1447 aa15.6■□□□□ 0.09
C9orf3-214ENST00000473778 UGGT2Q9NYU1 1516 aa15.59■□□□□ 0.09
C9orf3-214ENST00000473778 EHBP1L1Q8N3D4 1523 aa15.59■□□□□ 0.09
C9orf3-214ENST00000473778 TONSLQ96HA7 1378 aa15.57■□□□□ 0.08
C9orf3-214ENST00000473778 DENND4BO75064 1496 aaPredicted RBP15.56■□□□□ 0.08
C9orf3-214ENST00000473778 PBRM1Q86U86 1689 aa15.56■□□□□ 0.08
C9orf3-214ENST00000473778 KDM6BO15054 1643 aa15.55■□□□□ 0.08
C9orf3-214ENST00000473778 BCL11AQ9H165 835 aa15.53■□□□□ 0.08
C9orf3-214ENST00000473778 RRP7BPQ9NSQ0 103 aa15.53■□□□□ 0.08
C9orf3-214ENST00000473778 CDK13Q14004 1512 aaKnown RBP15.52■□□□□ 0.08
C9orf3-214ENST00000473778 CHIC2Q9UKJ5 165 aa15.52■□□□□ 0.08
C9orf3-214ENST00000473778 IQGAP2Q13576 1575 aa15.51■□□□□ 0.07
C9orf3-214ENST00000473778 TCOF1Q13428 1488 aaKnown RBP15.5■□□□□ 0.07
C9orf3-214ENST00000473778 EPRSP07814 1512 aaKnown RBP15.5■□□□□ 0.07
C9orf3-214ENST00000473778 GCC2Q8IWJ2 1684 aa15.5■□□□□ 0.07
C9orf3-214ENST00000473778 ARID3CA6NKF2 412 aa15.5■□□□□ 0.07
C9orf3-214ENST00000473778 ADAMTS12P58397 1594 aa15.5■□□□□ 0.07
C9orf3-214ENST00000473778 TRIM52Q96A61 297 aa15.49■□□□□ 0.07
C9orf3-214ENST00000473778 HECW1Q76N89 1606 aa15.49■□□□□ 0.07
C9orf3-214ENST00000473778 TSHZ2Q9NRE2 1034 aa15.48■□□□□ 0.07
C9orf3-214ENST00000473778 BCANQ96GW7 911 aa15.48■□□□□ 0.07
C9orf3-214ENST00000473778 WDR62O43379 1518 aa15.47■□□□□ 0.07
C9orf3-214ENST00000473778 CCER2I3L3R5 266 aa15.47■□□□□ 0.07
C9orf3-214ENST00000473778 ANP32CO43423 234 aa15.47■□□□□ 0.07
C9orf3-214ENST00000473778 FKBP8Q14318 412 aa15.44■□□□□ 0.06
C9orf3-214ENST00000473778 ZNF608Q9ULD9 1512 aaPredicted RBP15.43■□□□□ 0.06
C9orf3-214ENST00000473778 AKNAQ7Z591 1439 aa15.41■□□□□ 0.06
C9orf3-214ENST00000473778 WASHC2AQ641Q2 1341 aa15.4■□□□□ 0.06
C9orf3-214ENST00000473778 MIA2Q96PC5 1412 aa15.39■□□□□ 0.05
C9orf3-214ENST00000473778 MRC2Q9UBG0 1479 aa15.39■□□□□ 0.05
C9orf3-214ENST00000473778 HSPA5P11021 654 aaKnown RBP15.39■□□□□ 0.05
C9orf3-214ENST00000473778 MPHOSPH9Q99550 1183 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms