RNA–Protein interactions for RNA: ENST00000473371.1

NHLRC3-204, Transcript of NHL repeat containing 3, humanhuman

TSL 2

Gene NHLRC3, Length 3,237 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC3-204ENST00000473371 DDX10Q13206 875 aaKnown RBP20.31■□□□□ 0.84
NHLRC3-204ENST00000473371 IGF1RP08069 1367 aa20.31■□□□□ 0.84
NHLRC3-204ENST00000473371 FAM50AQ14320 339 aaKnown RBP20.3■□□□□ 0.84
NHLRC3-204ENST00000473371 SIN3AQ96ST3 1273 aa20.29■□□□□ 0.84
NHLRC3-204ENST00000473371 LRRC9Q6ZRR7 1453 aa20.29■□□□□ 0.84
NHLRC3-204ENST00000473371 WDR97A6NE52 1622 aa20.28■□□□□ 0.84
NHLRC3-204ENST00000473371 BCANQ96GW7 911 aa20.27■□□□□ 0.84
NHLRC3-204ENST00000473371 PHLDB1Q86UU1 1377 aa20.27■□□□□ 0.84
NHLRC3-204ENST00000473371 CARMIL1Q5VZK9 1371 aa20.25■□□□□ 0.83
NHLRC3-204ENST00000473371 FKBP8Q14318 412 aa20.23■□□□□ 0.83
NHLRC3-204ENST00000473371 ATP1B4Q9UN42 357 aaPredicted RBP20.21■□□□□ 0.83
NHLRC3-204ENST00000473371 FHAD1B1AJZ9 1412 aa20.21■□□□□ 0.83
NHLRC3-204ENST00000473371 ANP32EQ9BTT0 268 aa20.19■□□□□ 0.82
NHLRC3-204ENST00000473371 TIMELESSQ9UNS1 1208 aa20.19■□□□□ 0.82
NHLRC3-204ENST00000473371 PPP1R15AO75807 674 aaPredicted RBP20.19■□□□□ 0.82
NHLRC3-204ENST00000473371 P3H3Q8IVL6 736 aa20.18■□□□□ 0.82
NHLRC3-204ENST00000473371 NEFLP07196 543 aa20.15■□□□□ 0.82
NHLRC3-204ENST00000473371 HIRIP3Q9BW71 556 aaPredicted RBP20.15■□□□□ 0.82
NHLRC3-204ENST00000473371 CFAP43Q8NDM7 1665 aa20.15■□□□□ 0.82
NHLRC3-204ENST00000473371 FGD5Q6ZNL6 1462 aa20.15■□□□□ 0.82
NHLRC3-204ENST00000473371 PCF11O94913 1555 aaKnown RBP20.14■□□□□ 0.81
NHLRC3-204ENST00000473371 CADPSQ9ULU8 1353 aa20.13■□□□□ 0.81
NHLRC3-204ENST00000473371 ANP32CO43423 234 aa20.13■□□□□ 0.81
NHLRC3-204ENST00000473371 CCER2I3L3R5 266 aa20.12■□□□□ 0.81
NHLRC3-204ENST00000473371 KIF21AQ7Z4S6 1674 aa20.09■□□□□ 0.81
NHLRC3-204ENST00000473371 TRIM52Q96A61 297 aa20.09■□□□□ 0.81
NHLRC3-204ENST00000473371 FHOD3Q2V2M9 1422 aa20.06■□□□□ 0.8
NHLRC3-204ENST00000473371 TONSLQ96HA7 1378 aa20.03■□□□□ 0.8
NHLRC3-204ENST00000473371 FYCO1Q9BQS8 1478 aa20.03■□□□□ 0.8
NHLRC3-204ENST00000473371 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.03■□□□□ 0.8
NHLRC3-204ENST00000473371 CASKIN1Q8WXD9 1431 aa20■□□□□ 0.79
NHLRC3-204ENST00000473371 DNMBPQ6XZF7 1577 aa20■□□□□ 0.79
NHLRC3-204ENST00000473371 EFCAB5A4FU69 1503 aa19.98■□□□□ 0.79
NHLRC3-204ENST00000473371 RBM19Q9Y4C8 960 aaKnown RBP19.98■□□□□ 0.79
NHLRC3-204ENST00000473371 AQRO60306 1485 aaKnown RBP eCLIP19.96■□□□□ 0.79
NHLRC3-204ENST00000473371 CCDC18Q5T9S5 1454 aa19.96■□□□□ 0.79
NHLRC3-204ENST00000473371 FGD6Q6ZV73 1430 aa19.96■□□□□ 0.79
NHLRC3-204ENST00000473371 THOC2Q8NI27 1593 aaKnown RBP19.94■□□□□ 0.78
NHLRC3-204ENST00000473371 DNAJC5BQ9UF47 199 aa19.93■□□□□ 0.78
NHLRC3-204ENST00000473371 RAD54L2Q9Y4B4 1467 aa19.92■□□□□ 0.78
NHLRC3-204ENST00000473371 UACAQ9BZF9 1416 aa19.91■□□□□ 0.78
NHLRC3-204ENST00000473371 FANCD2Q9BXW9 1451 aa19.91■□□□□ 0.78
NHLRC3-204ENST00000473371 MTUS2Q5JR59 1369 aa19.91■□□□□ 0.78
NHLRC3-204ENST00000473371 FMN1Q68DA7 1419 aa19.9■□□□□ 0.78
NHLRC3-204ENST00000473371 NESP48681 1621 aa19.9■□□□□ 0.78
NHLRC3-204ENST00000473371 WDR62O43379 1518 aa19.89■□□□□ 0.77
NHLRC3-204ENST00000473371 HFM1A2PYH4 1435 aa19.89■□□□□ 0.77
NHLRC3-204ENST00000473371 ABCA10Q8WWZ4 1543 aa19.88■□□□□ 0.77
NHLRC3-204ENST00000473371 PTPRKQ15262 1439 aa19.87■□□□□ 0.77
NHLRC3-204ENST00000473371 PTPN23Q9H3S7 1636 aa19.87■□□□□ 0.77
NHLRC3-204ENST00000473371 CTTNBP2Q8WZ74 1663 aa19.87■□□□□ 0.77
NHLRC3-204ENST00000473371 HNRNPUQ00839 825 aaKnown RBP eCLIP19.85■□□□□ 0.77
NHLRC3-204ENST00000473371 CUL7Q14999 1698 aa19.85■□□□□ 0.77
NHLRC3-204ENST00000473371 POLA1P09884 1462 aaPredicted RBP19.83■□□□□ 0.77
NHLRC3-204ENST00000473371 SNAPC4Q5SXM2 1469 aa19.83■□□□□ 0.77
NHLRC3-204ENST00000473371 NAIPQ13075 1403 aa19.83■□□□□ 0.76
NHLRC3-204ENST00000473371 URB2Q14146 1524 aaKnown RBP19.82■□□□□ 0.76
NHLRC3-204ENST00000473371 TARBP1Q13395 1621 aaKnown RBP19.82■□□□□ 0.76
NHLRC3-204ENST00000473371 TOPBP1Q92547 1522 aa19.81■□□□□ 0.76
NHLRC3-204ENST00000473371 MYOM3Q5VTT5 1437 aa19.79■□□□□ 0.76
NHLRC3-204ENST00000473371 PDS5BQ9NTI5 1447 aa19.79■□□□□ 0.76
NHLRC3-204ENST00000473371 NCOA2Q15596 1464 aa19.79■□□□□ 0.76
NHLRC3-204ENST00000473371 ABCA5Q8WWZ7 1642 aa19.78■□□□□ 0.76
NHLRC3-204ENST00000473371 IRX6P78412 446 aaPredicted RBP19.77■□□□□ 0.75
NHLRC3-204ENST00000473371 KDM5BQ9UGL1 1544 aa19.75■□□□□ 0.75
NHLRC3-204ENST00000473371 HSPA5P11021 654 aaKnown RBP19.75■□□□□ 0.75
NHLRC3-204ENST00000473371 CDK11AQ9UQ88 783 aaPredicted RBP19.74■□□□□ 0.75
NHLRC3-204ENST00000473371 WASHC2AQ641Q2 1341 aa19.74■□□□□ 0.75
NHLRC3-204ENST00000473371 SUPT6HQ7KZ85 1726 aaKnown RBP19.73■□□□□ 0.75
NHLRC3-204ENST00000473371 BCL11AQ9H165 835 aa19.73■□□□□ 0.75
NHLRC3-204ENST00000473371 RRP7BPQ9NSQ0 103 aa19.73■□□□□ 0.75
NHLRC3-204ENST00000473371 LRRIQ1Q96JM4 1722 aa19.73■□□□□ 0.75
NHLRC3-204ENST00000473371 MRC2Q9UBG0 1479 aa19.72■□□□□ 0.75
NHLRC3-204ENST00000473371 GRIN2BQ13224 1484 aa19.72■□□□□ 0.75
NHLRC3-204ENST00000473371 SAMD9Q5K651 1589 aa19.71■□□□□ 0.75
NHLRC3-204ENST00000473371 EHBP1L1Q8N3D4 1523 aa19.71■□□□□ 0.75
NHLRC3-204ENST00000473371 MSH5O43196 834 aa19.7■□□□□ 0.74
NHLRC3-204ENST00000473371 CHIC2Q9UKJ5 165 aa19.7■□□□□ 0.74
NHLRC3-204ENST00000473371 EIF4G2P78344 907 aaKnown RBP eCLIP19.7■□□□□ 0.74
NHLRC3-204ENST00000473371 FANCIQ9NVI1 1328 aa19.66■□□□□ 0.74
NHLRC3-204ENST00000473371 UGGT2Q9NYU1 1516 aa19.66■□□□□ 0.74
NHLRC3-204ENST00000473371 TDRD9Q8NDG6 1382 aaKnown RBP19.65■□□□□ 0.74
NHLRC3-204ENST00000473371 ERICH6BQ5W0A0 696 aa19.64■□□□□ 0.73
NHLRC3-204ENST00000473371 CNTLNQ9NXG0 1405 aa19.64■□□□□ 0.73
NHLRC3-204ENST00000473371 ERICH6Q7L0X2 663 aa19.63■□□□□ 0.73
NHLRC3-204ENST00000473371 PBRM1Q86U86 1689 aa19.62■□□□□ 0.73
NHLRC3-204ENST00000473371 HECW1Q76N89 1606 aa19.62■□□□□ 0.73
NHLRC3-204ENST00000473371 CCDC184Q52MB2 194 aa19.62■□□□□ 0.73
NHLRC3-204ENST00000473371 PPP4R2Q9NY27 417 aa19.62■□□□□ 0.73
NHLRC3-204ENST00000473371 GCC2Q8IWJ2 1684 aa19.62■□□□□ 0.73
NHLRC3-204ENST00000473371 DENND4BO75064 1496 aaPredicted RBP19.61■□□□□ 0.73
NHLRC3-204ENST00000473371 ARHGEF11O15085 1522 aa19.6■□□□□ 0.73
NHLRC3-204ENST00000473371 GAPVD1Q14C86 1478 aa19.6■□□□□ 0.73
NHLRC3-204ENST00000473371 MAGI3Q5TCQ9 1506 aa19.6■□□□□ 0.73
NHLRC3-204ENST00000473371 MPHOSPH9Q99550 1183 aa19.6■□□□□ 0.73
NHLRC3-204ENST00000473371 TCOF1Q13428 1488 aaKnown RBP19.6■□□□□ 0.73
NHLRC3-204ENST00000473371 FAM9BQ8IZU0 186 aa19.59■□□□□ 0.73
NHLRC3-204ENST00000473371 L3MBTL2Q969R5 705 aa19.59■□□□□ 0.73
NHLRC3-204ENST00000473371 PRKRIP1Q9H875 184 aaPredicted RBP19.58■□□□□ 0.72
NHLRC3-204ENST00000473371 MRS2Q9HD23 443 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms