RNA–Protein interactions for RNA: ENST00000472928.5

HDAC1-205, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-205ENST00000472928 WDR97A6NE52 1622 aa11.54□□□□□ -0.56
HDAC1-205ENST00000472928 FGD5Q6ZNL6 1462 aa11.53□□□□□ -0.56
HDAC1-205ENST00000472928 SLC4A2P04920 1241 aa11.53□□□□□ -0.56
HDAC1-205ENST00000472928 SYNJ2O15056 1496 aa11.52□□□□□ -0.56
HDAC1-205ENST00000472928 GRIN2BQ13224 1484 aa11.52□□□□□ -0.56
HDAC1-205ENST00000472928 GAPVD1Q14C86 1478 aa11.52□□□□□ -0.56
HDAC1-205ENST00000472928 CUX1P39880 1505 aa11.49□□□□□ -0.57
HDAC1-205ENST00000472928 ERCC6L2Q5T890 1561 aa11.45□□□□□ -0.58
HDAC1-205ENST00000472928 PBRM1Q86U86 1689 aa11.42□□□□□ -0.58
HDAC1-205ENST00000472928 ABCA5Q8WWZ7 1642 aa11.39□□□□□ -0.59
HDAC1-205ENST00000472928 ABCA10Q8WWZ4 1543 aa11.39□□□□□ -0.59
HDAC1-205ENST00000472928 CEP170Q5SW79 1584 aa11.38□□□□□ -0.59
HDAC1-205ENST00000472928 NUP160Q12769 1436 aa11.38□□□□□ -0.59
HDAC1-205ENST00000472928 GRIN2AQ12879 1464 aa11.38□□□□□ -0.59
HDAC1-205ENST00000472928 MYCNP04198 464 aaPredicted RBP11.35□□□□□ -0.59
HDAC1-205ENST00000472928 KIF13AQ9H1H9 1805 aa11.35□□□□□ -0.59
HDAC1-205ENST00000472928 SHROOM2Q13796 1616 aa11.34□□□□□ -0.59
HDAC1-205ENST00000472928 ADAMTS12P58397 1594 aa11.33□□□□□ -0.6
HDAC1-205ENST00000472928 FHAD1B1AJZ9 1412 aa11.28□□□□□ -0.6
HDAC1-205ENST00000472928 ATXN8OSP0DMR3 200 aa11.28□□□□□ -0.6
HDAC1-205ENST00000472928 ABCC10Q5T3U5 1492 aa11.27□□□□□ -0.6
HDAC1-205ENST00000472928 KDM4FA0A1W2PPD8 638 aa11.27□□□□□ -0.61
HDAC1-205ENST00000472928 PRG4Q92954 1404 aaPredicted RBP11.26□□□□□ -0.61
HDAC1-205ENST00000472928 WRNQ14191 1432 aaPredicted RBP eCLIP11.26□□□□□ -0.61
HDAC1-205ENST00000472928 FAM69CQ0P6D2 419 aa11.25□□□□□ -0.61
HDAC1-205ENST00000472928 ILDR1Q86SU0 546 aaPredicted RBP11.24□□□□□ -0.61
HDAC1-205ENST00000472928 DCAF8L1A6NGE4 600 aa11.23□□□□□ -0.61
HDAC1-205ENST00000472928 MAPKBP1O60336 1514 aa11.23□□□□□ -0.61
HDAC1-205ENST00000472928 DIP2BQ9P265 1576 aa11.23□□□□□ -0.61
HDAC1-205ENST00000472928 ERICH3Q5RHP9 1530 aa11.22□□□□□ -0.61
HDAC1-205ENST00000472928 JPH4Q96JJ6 628 aa11.22□□□□□ -0.61
HDAC1-205ENST00000472928 SUPT5HO00267 1087 aaKnown RBP11.21□□□□□ -0.61
HDAC1-205ENST00000472928 TOP2BQ02880 1626 aa11.19□□□□□ -0.62
HDAC1-205ENST00000472928 ADCY10Q96PN6 1610 aa11.19□□□□□ -0.62
HDAC1-205ENST00000472928 BIVM-ERCC5R4GMW8 1640 aa11.18□□□□□ -0.62
HDAC1-205ENST00000472928 RUSC2Q8N2Y8 1516 aa11.18□□□□□ -0.62
HDAC1-205ENST00000472928 KDM6BO15054 1643 aa11.17□□□□□ -0.62
HDAC1-205ENST00000472928 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.16□□□□□ -0.622e-8■■□□□ 13.8
HDAC1-205ENST00000472928 NPM1P06748 294 aaKnown RBP eCLIP11.15□□□□□ -0.62
HDAC1-205ENST00000472928 TSPOAP1O95153 1857 aa11.12□□□□□ -0.63
HDAC1-205ENST00000472928 KIAA0586Q9BVV6 1533 aa11.09□□□□□ -0.63
HDAC1-205ENST00000472928 ADGRL1O94910 1474 aa11.08□□□□□ -0.64
HDAC1-205ENST00000472928 PPRC1Q5VV67 1664 aaKnown RBP11.06□□□□□ -0.64
HDAC1-205ENST00000472928 U3KPZ7 1027 aaPredicted RBP11.06□□□□□ -0.64
HDAC1-205ENST00000472928 PTPRGP23470 1445 aa11.04□□□□□ -0.64
HDAC1-205ENST00000472928 COL17A1Q9UMD9 1497 aaPredicted RBP11.04□□□□□ -0.64
HDAC1-205ENST00000472928 ABCC2Q92887 1545 aa11.04□□□□□ -0.64
HDAC1-205ENST00000472928 IGF1RP08069 1367 aa11.03□□□□□ -0.64
HDAC1-205ENST00000472928 GLI2P10070 1586 aa11.03□□□□□ -0.64
HDAC1-205ENST00000472928 ASXL2Q76L83 1435 aa11.03□□□□□ -0.64
HDAC1-205ENST00000472928 ATF5Q9Y2D1 282 aaPredicted RBP11.03□□□□□ -0.64
HDAC1-205ENST00000472928 HECW2Q9P2P5 1572 aa11.03□□□□□ -0.64
HDAC1-205ENST00000472928 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.02□□□□□ -0.65
HDAC1-205ENST00000472928 HNRNPUL2Q1KMD3 747 aaKnown RBP11.02□□□□□ -0.65
HDAC1-205ENST00000472928 SAMD1Q6SPF0 538 aaPredicted RBP11.02□□□□□ -0.65
HDAC1-205ENST00000472928 PLB1Q6P1J6 1458 aa11.01□□□□□ -0.65
HDAC1-205ENST00000472928 TNIKQ9UKE5 1360 aa10.99□□□□□ -0.65
HDAC1-205ENST00000472928 UHRF1BP1LA0JNW5 1464 aa10.99□□□□□ -0.65
HDAC1-205ENST00000472928 TTBK1Q5TCY1 1321 aaPredicted RBP10.98□□□□□ -0.65
HDAC1-205ENST00000472928 EPRSP07814 1512 aaKnown RBP10.97□□□□□ -0.65
HDAC1-205ENST00000472928 CUL7Q14999 1698 aa10.97□□□□□ -0.65
HDAC1-205ENST00000472928 KIF27Q86VH2 1401 aa10.96□□□□□ -0.65
HDAC1-205ENST00000472928 MAP3K4Q9Y6R4 1608 aa10.95□□□□□ -0.66
HDAC1-205ENST00000472928 UACAQ9BZF9 1416 aa10.95□□□□□ -0.66
HDAC1-205ENST00000472928 CARMIL2Q6F5E8 1435 aa10.94□□□□□ -0.66
HDAC1-205ENST00000472928 KDM5BQ9UGL1 1544 aa10.94□□□□□ -0.66
HDAC1-205ENST00000472928 CARMIL1Q5VZK9 1371 aa10.93□□□□□ -0.66
HDAC1-205ENST00000472928 FKBP8Q14318 412 aa10.93□□□□□ -0.66
HDAC1-205ENST00000472928 DISP1Q96F81 1524 aa10.93□□□□□ -0.66
HDAC1-205ENST00000472928 TEX14Q8IWB6 1497 aa10.92□□□□□ -0.66
HDAC1-205ENST00000472928 IQGAP2Q13576 1575 aa10.91□□□□□ -0.66
HDAC1-205ENST00000472928 ZCCHC11Q5TAX3 1644 aaKnown RBP10.88□□□□□ -0.67
HDAC1-205ENST00000472928 FBXO41Q8TF61 875 aa10.88□□□□□ -0.67
HDAC1-205ENST00000472928 WDR7Q9Y4E6 1490 aa10.87□□□□□ -0.67
HDAC1-205ENST00000472928 UGGT2Q9NYU1 1516 aa10.86□□□□□ -0.67
HDAC1-205ENST00000472928 MAGI3Q5TCQ9 1506 aa10.84□□□□□ -0.67
HDAC1-205ENST00000472928 KIAA0556O60303 1618 aa10.84□□□□□ -0.67
HDAC1-205ENST00000472928 CD109Q6YHK3 1445 aa10.83□□□□□ -0.68
HDAC1-205ENST00000472928 APLP2Q06481 763 aa10.81□□□□□ -0.68
HDAC1-205ENST00000472928 KIF21BO75037 1637 aa10.8□□□□□ -0.68
HDAC1-205ENST00000472928 CFAP43Q8NDM7 1665 aa10.79□□□□□ -0.68
HDAC1-205ENST00000472928 ZNF219Q9P2Y4 722 aaPredicted RBP10.79□□□□□ -0.68
HDAC1-205ENST00000472928 KCNH8Q96L42 1107 aa10.78□□□□□ -0.68
HDAC1-205ENST00000472928 PTPRMP28827 1452 aa10.78□□□□□ -0.68
HDAC1-205ENST00000472928 RAPGEF2Q9Y4G8 1499 aa10.78□□□□□ -0.68
HDAC1-205ENST00000472928 ARAP3Q8WWN8 1544 aa10.77□□□□□ -0.69
HDAC1-205ENST00000472928 ABCA8O94911 1581 aa10.77□□□□□ -0.69
HDAC1-205ENST00000472928 ADAMTSL3P82987 1691 aa10.76□□□□□ -0.69
HDAC1-205ENST00000472928 LMTK3Q96Q04 1460 aa10.73□□□□□ -0.69
HDAC1-205ENST00000472928 PCF11O94913 1555 aaKnown RBP10.73□□□□□ -0.69
HDAC1-205ENST00000472928 RTN4Q9NQC3 1192 aaKnown RBP10.72□□□□□ -0.69
HDAC1-205ENST00000472928 AMER1Q5JTC6 1135 aaPredicted RBP10.71□□□□□ -0.69
HDAC1-205ENST00000472928 GOLGA3Q08378 1498 aa10.7□□□□□ -0.7
HDAC1-205ENST00000472928 PHLDB1Q86UU1 1377 aa10.69□□□□□ -0.7
HDAC1-205ENST00000472928 RAPGEF3O95398 923 aa10.69□□□□□ -0.7
HDAC1-205ENST00000472928 BCORL1Q5H9F3 1711 aa10.69□□□□□ -0.7
HDAC1-205ENST00000472928 MADDQ8WXG6 1647 aa10.69□□□□□ -0.7
HDAC1-205ENST00000472928 FRMPD1Q5SYB0 1578 aa10.68□□□□□ -0.7
HDAC1-205ENST00000472928 ATP10BO94823 1461 aa10.68□□□□□ -0.7
HDAC1-205ENST00000472928 CTTNBP2Q8WZ74 1663 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms