RNA–Protein interactions for RNA: ENST00000470537.1

XRN1-208, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 2

Gene XRN1, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-208ENST00000470537 DNMBPQ6XZF7 1577 aa16.37■□□□□ 0.21
XRN1-208ENST00000470537 EIF4G3O43432 1585 aaKnown RBP16.36■□□□□ 0.21
XRN1-208ENST00000470537 POLA2Q14181 598 aa16.36■□□□□ 0.21
XRN1-208ENST00000470537 AQRO60306 1485 aaKnown RBP eCLIP16.34■□□□□ 0.21
XRN1-208ENST00000470537 RBM42Q9BTD8 480 aaKnown RBP16.32■□□□□ 0.2
XRN1-208ENST00000470537 FOXD4L1Q9NU39 408 aa16.31■□□□□ 0.2
XRN1-208ENST00000470537 TARBP1Q13395 1621 aaKnown RBP16.28■□□□□ 0.2
XRN1-208ENST00000470537 CHD1O14646 1710 aa16.28■□□□□ 0.2
XRN1-208ENST00000470537 CHMP7Q8WUX9 453 aaPredicted RBP16.26■□□□□ 0.19
XRN1-208ENST00000470537 POLA1P09884 1462 aaPredicted RBP16.26■□□□□ 0.19
XRN1-208ENST00000470537 ARAP1Q96P48 1450 aa16.26■□□□□ 0.19
XRN1-208ENST00000470537 SOGA1O94964 1423 aa16.26■□□□□ 0.19
XRN1-208ENST00000470537 TDRD9Q8NDG6 1382 aaKnown RBP16.22■□□□□ 0.19
XRN1-208ENST00000470537 WDR97A6NE52 1622 aa16.21■□□□□ 0.19
XRN1-208ENST00000470537 RAD54L2Q9Y4B4 1467 aa16.18■□□□□ 0.18
XRN1-208ENST00000470537 MAGI1Q96QZ7 1491 aaPredicted RBP16.16■□□□□ 0.18
XRN1-208ENST00000470537 SYNJ1O43426 1573 aa16.16■□□□□ 0.18
XRN1-208ENST00000470537 ATF5Q9Y2D1 282 aaPredicted RBP16.15■□□□□ 0.18
XRN1-208ENST00000470537 SNAPC4Q5SXM2 1469 aa16.15■□□□□ 0.18
XRN1-208ENST00000470537 GRIN2BQ13224 1484 aa16.14■□□□□ 0.17
XRN1-208ENST00000470537 FGD5Q6ZNL6 1462 aa16.12■□□□□ 0.17
XRN1-208ENST00000470537 SYNJ2O15056 1496 aa16.1■□□□□ 0.17
XRN1-208ENST00000470537 CLASP1Q7Z460 1538 aa16.1■□□□□ 0.17
XRN1-208ENST00000470537 GAPVD1Q14C86 1478 aa16.04■□□□□ 0.16
XRN1-208ENST00000470537 ZBTB12Q9Y330 459 aaPredicted RBP16.04■□□□□ 0.16
XRN1-208ENST00000470537 CUX1P39880 1505 aa16.03■□□□□ 0.16
XRN1-208ENST00000470537 CHRDL2Q6WN34 429 aa16.01■□□□□ 0.15
XRN1-208ENST00000470537 ZBTB22O15209 634 aa16■□□□□ 0.15
XRN1-208ENST00000470537 ABCA10Q8WWZ4 1543 aa15.95■□□□□ 0.14
XRN1-208ENST00000470537 PBRM1Q86U86 1689 aa15.95■□□□□ 0.14
XRN1-208ENST00000470537 WRNQ14191 1432 aaPredicted RBP eCLIP15.91■□□□□ 0.14
XRN1-208ENST00000470537 AKT1S1Q96B36 256 aa15.89■□□□□ 0.13
XRN1-208ENST00000470537 GRIN2AQ12879 1464 aa15.89■□□□□ 0.13
XRN1-208ENST00000470537 ABCA5Q8WWZ7 1642 aa15.88■□□□□ 0.13
XRN1-208ENST00000470537 NUP160Q12769 1436 aa15.85■□□□□ 0.13
XRN1-208ENST00000470537 FHAD1B1AJZ9 1412 aa15.84■□□□□ 0.13
XRN1-208ENST00000470537 NPM1P06748 294 aaKnown RBP eCLIP15.82■□□□□ 0.12
XRN1-208ENST00000470537 CEP170Q5SW79 1584 aa15.82■□□□□ 0.12
XRN1-208ENST00000470537 ATXN8OSP0DMR3 200 aa15.8■□□□□ 0.12
XRN1-208ENST00000470537 JPH4Q96JJ6 628 aa15.79■□□□□ 0.12
XRN1-208ENST00000470537 ADAMTS12P58397 1594 aa15.79■□□□□ 0.12
XRN1-208ENST00000470537 SUPT5HO00267 1087 aaKnown RBP15.78■□□□□ 0.12
XRN1-208ENST00000470537 ERCC6L2Q5T890 1561 aa15.77■□□□□ 0.11
XRN1-208ENST00000470537 ERICH3Q5RHP9 1530 aa15.77■□□□□ 0.11
XRN1-208ENST00000470537 SHROOM2Q13796 1616 aa15.76■□□□□ 0.11
XRN1-208ENST00000470537 PRG4Q92954 1404 aaPredicted RBP15.75■□□□□ 0.11
XRN1-208ENST00000470537 REM2Q8IYK8 340 aaPredicted RBP15.74■□□□□ 0.11
XRN1-208ENST00000470537 TOP2BQ02880 1626 aa15.74■□□□□ 0.11
XRN1-208ENST00000470537 FAM69CQ0P6D2 419 aa15.72■□□□□ 0.11
XRN1-208ENST00000470537 BIVM-ERCC5R4GMW8 1640 aa15.71■□□□□ 0.11
XRN1-208ENST00000470537 KIF13AQ9H1H9 1805 aa15.66■□□□□ 0.1
XRN1-208ENST00000470537 ABCC10Q5T3U5 1492 aa15.65■□□□□ 0.1
XRN1-208ENST00000470537 MAPKBP1O60336 1514 aa15.62■□□□□ 0.09
XRN1-208ENST00000470537 PITPNM1O00562 1244 aa15.58■□□□□ 0.08
XRN1-208ENST00000470537 PIP4P2Q8N4L2 257 aa15.58■□□□□ 0.08
XRN1-208ENST00000470537 KIAA0586Q9BVV6 1533 aa15.57■□□□□ 0.08
XRN1-208ENST00000470537 RUSC2Q8N2Y8 1516 aa15.56■□□□□ 0.08
XRN1-208ENST00000470537 DIP2BQ9P265 1576 aa15.53■□□□□ 0.08
XRN1-208ENST00000470537 KDM6BO15054 1643 aa15.53■□□□□ 0.08
XRN1-208ENST00000470537 KIF27Q86VH2 1401 aa15.52■□□□□ 0.08
XRN1-208ENST00000470537 PTPRGP23470 1445 aa15.51■□□□□ 0.07
XRN1-208ENST00000470537 ADCY10Q96PN6 1610 aa15.51■□□□□ 0.07
XRN1-208ENST00000470537 SPDYE2BA6NHP3 402 aa15.51■□□□□ 0.07
XRN1-208ENST00000470537 SPDYE6P0CI01 402 aa15.51■□□□□ 0.07
XRN1-208ENST00000470537 SPDYE2Q495Y8 402 aa15.51■□□□□ 0.07
XRN1-208ENST00000470537 IGF1RP08069 1367 aa15.5■□□□□ 0.07
XRN1-208ENST00000470537 KDM4FA0A1W2PPD8 638 aa15.5■□□□□ 0.07
XRN1-208ENST00000470537 CARMIL2Q6F5E8 1435 aa15.5■□□□□ 0.07
XRN1-208ENST00000470537 CUL7Q14999 1698 aa15.47■□□□□ 0.07
XRN1-208ENST00000470537 SP7Q8TDD2 431 aaPredicted RBP15.46■□□□□ 0.07
XRN1-208ENST00000470537 TSPOAP1O95153 1857 aa15.45■□□□□ 0.06
XRN1-208ENST00000470537 TNIKQ9UKE5 1360 aa15.45■□□□□ 0.06
XRN1-208ENST00000470537 FXR2P51116 673 aaKnown RBP eCLIP15.44■□□□□ 0.06
XRN1-208ENST00000470537 PLB1Q6P1J6 1458 aa15.44■□□□□ 0.06
XRN1-208ENST00000470537 CARMIL1Q5VZK9 1371 aa15.43■□□□□ 0.06
XRN1-208ENST00000470537 TTBK1Q5TCY1 1321 aaPredicted RBP15.43■□□□□ 0.06
XRN1-208ENST00000470537 ABCC2Q92887 1545 aa15.42■□□□□ 0.06
XRN1-208ENST00000470537 MKRN4PQ13434 485 aaPredicted RBP15.4■□□□□ 0.06
XRN1-208ENST00000470537 ASXL2Q76L83 1435 aa15.39■□□□□ 0.05
XRN1-208ENST00000470537 HAX1O00165 279 aa15.37■□□□□ 0.05
XRN1-208ENST00000470537 UHRF1BP1LA0JNW5 1464 aa15.37■□□□□ 0.05
XRN1-208ENST00000470537 GLI2P10070 1586 aa15.36■□□□□ 0.05
XRN1-208ENST00000470537 UACAQ9BZF9 1416 aa15.35■□□□□ 0.05
XRN1-208ENST00000470537 ILDR1Q86SU0 546 aaPredicted RBP15.34■□□□□ 0.05
XRN1-208ENST00000470537 TEX14Q8IWB6 1497 aa15.33■□□□□ 0.05
XRN1-208ENST00000470537 IQGAP2Q13576 1575 aa15.33■□□□□ 0.05
XRN1-208ENST00000470537 ZNF692Q9BU19 519 aaPredicted RBP15.32■□□□□ 0.04
XRN1-208ENST00000470537 FAM9AQ8IZU1 332 aaPredicted RBP15.3■□□□□ 0.04
XRN1-208ENST00000470537 ADGRL1O94910 1474 aa15.29■□□□□ 0.04
XRN1-208ENST00000470537 SPDYE1Q8NFV5 336 aaPredicted RBP15.29■□□□□ 0.04
XRN1-208ENST00000470537 CLEC11AQ9Y240 323 aa15.29■□□□□ 0.04
XRN1-208ENST00000470537 KDM5BQ9UGL1 1544 aa15.28■□□□□ 0.04
XRN1-208ENST00000470537 EPRSP07814 1512 aaKnown RBP15.27■□□□□ 0.04
XRN1-208ENST00000470537 SSUH2Q9Y2M2 353 aa15.26■□□□□ 0.03
XRN1-208ENST00000470537 DISP1Q96F81 1524 aa15.24■□□□□ 0.03
XRN1-208ENST00000470537 RAPGEF2Q9Y4G8 1499 aa15.24■□□□□ 0.03
XRN1-208ENST00000470537 PPRC1Q5VV67 1664 aaKnown RBP15.24■□□□□ 0.03
XRN1-208ENST00000470537 MAP3K4Q9Y6R4 1608 aa15.23■□□□□ 0.03
XRN1-208ENST00000470537 UGGT2Q9NYU1 1516 aa15.22■□□□□ 0.03
XRN1-208ENST00000470537 COL17A1Q9UMD9 1497 aaPredicted RBP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms