RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 CUX1P39880 1505 aa10.47□□□□□ -0.73
USP48-206ENST00000464577 DMRT2Q9Y5R5 561 aa10.45□□□□□ -0.74
USP48-206ENST00000464577 HMGXB3Q12766 1538 aa10.44□□□□□ -0.74
USP48-206ENST00000464577 RAB3GAP2Q9H2M9 1393 aa10.44□□□□□ -0.74
USP48-206ENST00000464577 TIAM1Q13009 1591 aa10.44□□□□□ -0.74
USP48-206ENST00000464577 SETD5Q9C0A6 1442 aa10.41□□□□□ -0.74
USP48-206ENST00000464577 TIMELESSQ9UNS1 1208 aa10.4□□□□□ -0.74
USP48-206ENST00000464577 POTEHQ6S545 545 aa10.39□□□□□ -0.75
USP48-206ENST00000464577 WDR97A6NE52 1622 aa10.39□□□□□ -0.75
USP48-206ENST00000464577 NCAPD3P42695 1498 aa10.39□□□□□ -0.75
USP48-206ENST00000464577 CFAP43Q8NDM7 1665 aa10.38□□□□□ -0.75
USP48-206ENST00000464577 LRRC9Q6ZRR7 1453 aa10.38□□□□□ -0.75
USP48-206ENST00000464577 CFTRP13569 1480 aa10.37□□□□□ -0.75
USP48-206ENST00000464577 CCER2I3L3R5 266 aa10.37□□□□□ -0.75
USP48-206ENST00000464577 KCNH8Q96L42 1107 aa10.37□□□□□ -0.75
USP48-206ENST00000464577 PPP1R15AO75807 674 aaPredicted RBP10.36□□□□□ -0.75
USP48-206ENST00000464577 PRDM2Q13029 1718 aa10.36□□□□□ -0.75
USP48-206ENST00000464577 FKBP8Q14318 412 aa10.35□□□□□ -0.75
USP48-206ENST00000464577 FHAD1B1AJZ9 1412 aa10.34□□□□□ -0.75
USP48-206ENST00000464577 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.34□□□□□ -0.75
USP48-206ENST00000464577 NEFLP07196 543 aa10.34□□□□□ -0.75
USP48-206ENST00000464577 PHLDB1Q86UU1 1377 aa10.33□□□□□ -0.76
USP48-206ENST00000464577 ITGAEP38570 1179 aa10.32□□□□□ -0.76
USP48-206ENST00000464577 IGF1RP08069 1367 aa10.32□□□□□ -0.76
USP48-206ENST00000464577 DDX10Q13206 875 aaKnown RBP10.32□□□□□ -0.76
USP48-206ENST00000464577 BCANQ96GW7 911 aa10.3□□□□□ -0.76
USP48-206ENST00000464577 PCF11O94913 1555 aaKnown RBP10.3□□□□□ -0.76
USP48-206ENST00000464577 ANP32CO43423 234 aa10.29□□□□□ -0.76
USP48-206ENST00000464577 RBM19Q9Y4C8 960 aaKnown RBP10.29□□□□□ -0.76
USP48-206ENST00000464577 SIN3AQ96ST3 1273 aa10.28□□□□□ -0.76
USP48-206ENST00000464577 BCL11AQ9H165 835 aa10.28□□□□□ -0.76
USP48-206ENST00000464577 CARMIL1Q5VZK9 1371 aa10.28□□□□□ -0.76
USP48-206ENST00000464577 FYCO1Q9BQS8 1478 aa10.28□□□□□ -0.76
USP48-206ENST00000464577 AQRO60306 1485 aaKnown RBP eCLIP10.27□□□□□ -0.772e-6■■■□□ 15.8
USP48-206ENST00000464577 EFCAB5A4FU69 1503 aa10.26□□□□□ -0.77
USP48-206ENST00000464577 FGD5Q6ZNL6 1462 aa10.25□□□□□ -0.77
USP48-206ENST00000464577 RNF39Q9H2S5 420 aa10.25□□□□□ -0.77
USP48-206ENST00000464577 FAM50AQ14320 339 aaKnown RBP10.24□□□□□ -0.77
USP48-206ENST00000464577 CASKIN1Q8WXD9 1431 aa10.24□□□□□ -0.77
USP48-206ENST00000464577 FANCIQ9NVI1 1328 aa10.22□□□□□ -0.77
USP48-206ENST00000464577 TONSLQ96HA7 1378 aa10.22□□□□□ -0.77
USP48-206ENST00000464577 UACAQ9BZF9 1416 aa10.21□□□□□ -0.77
USP48-206ENST00000464577 HFM1A2PYH4 1435 aa10.21□□□□□ -0.78
USP48-206ENST00000464577 CCDC18Q5T9S5 1454 aa10.21□□□□□ -0.78
USP48-206ENST00000464577 TRIM52Q96A61 297 aa10.21□□□□□ -0.78
USP48-206ENST00000464577 FGD6Q6ZV73 1430 aa10.2□□□□□ -0.78
USP48-206ENST00000464577 PTPN23Q9H3S7 1636 aa10.2□□□□□ -0.78
USP48-206ENST00000464577 ERICH6BQ5W0A0 696 aa10.19□□□□□ -0.78
USP48-206ENST00000464577 KDM5BQ9UGL1 1544 aa10.19□□□□□ -0.78
USP48-206ENST00000464577 CC2D2AQ9P2K1 1620 aa10.18□□□□□ -0.78
USP48-206ENST00000464577 FHOD3Q2V2M9 1422 aa10.18□□□□□ -0.78
USP48-206ENST00000464577 CADPSQ9ULU8 1353 aa10.18□□□□□ -0.78
USP48-206ENST00000464577 CUL7Q14999 1698 aa10.17□□□□□ -0.78
USP48-206ENST00000464577 CTTNBP2Q8WZ74 1663 aa10.17□□□□□ -0.78
USP48-206ENST00000464577 SLC24A1O60721 1099 aa10.16□□□□□ -0.78
USP48-206ENST00000464577 SNAPC4Q5SXM2 1469 aa10.16□□□□□ -0.78
USP48-206ENST00000464577 FMN1Q68DA7 1419 aa10.16□□□□□ -0.78
USP48-206ENST00000464577 ABCA10Q8WWZ4 1543 aa10.15□□□□□ -0.78
USP48-206ENST00000464577 HIRIP3Q9BW71 556 aaPredicted RBP10.15□□□□□ -0.78
USP48-206ENST00000464577 THOC2Q8NI27 1593 aaKnown RBP10.15□□□□□ -0.79
USP48-206ENST00000464577 NCOA2Q15596 1464 aa10.14□□□□□ -0.79
USP48-206ENST00000464577 C1QBPQ07021 282 aaKnown RBP10.14□□□□□ -0.79
USP48-206ENST00000464577 CDK11AQ9UQ88 783 aaPredicted RBP10.14□□□□□ -0.79
USP48-206ENST00000464577 NAIPQ13075 1403 aa10.14□□□□□ -0.79
USP48-206ENST00000464577 PTPRKQ15262 1439 aa10.13□□□□□ -0.79
USP48-206ENST00000464577 DNMBPQ6XZF7 1577 aa10.13□□□□□ -0.79
USP48-206ENST00000464577 MAPK8IP2Q13387 824 aaPredicted RBP10.13□□□□□ -0.79
USP48-206ENST00000464577 MYT1LQ9UL68 1186 aa10.12□□□□□ -0.79
USP48-206ENST00000464577 HECW1Q76N89 1606 aa10.12□□□□□ -0.79
USP48-206ENST00000464577 MYOM3Q5VTT5 1437 aa10.12□□□□□ -0.79
USP48-206ENST00000464577 HNRNPUQ00839 825 aaKnown RBP eCLIP10.11□□□□□ -0.79
USP48-206ENST00000464577 SAMD9Q5K651 1589 aa10.11□□□□□ -0.79
USP48-206ENST00000464577 GCC2Q8IWJ2 1684 aa10.11□□□□□ -0.79
USP48-206ENST00000464577 EHBP1L1Q8N3D4 1523 aa10.11□□□□□ -0.79
USP48-206ENST00000464577 SUPT6HQ7KZ85 1726 aaKnown RBP10.11□□□□□ -0.79
USP48-206ENST00000464577 P3H3Q8IVL6 736 aa10.1□□□□□ -0.79
USP48-206ENST00000464577 AKNAQ7Z591 1439 aa10.1□□□□□ -0.79
USP48-206ENST00000464577 CNTLNQ9NXG0 1405 aa10.1□□□□□ -0.79
USP48-206ENST00000464577 MTUS2Q5JR59 1369 aa10.1□□□□□ -0.79
USP48-206ENST00000464577 PPP4R2Q9NY27 417 aa10.1□□□□□ -0.79
USP48-206ENST00000464577 ARHGEF11O15085 1522 aa10.09□□□□□ -0.79
USP48-206ENST00000464577 GRIN2BQ13224 1484 aa10.09□□□□□ -0.79
USP48-206ENST00000464577 KIF21AQ7Z4S6 1674 aa10.09□□□□□ -0.79
USP48-206ENST00000464577 FANCD2Q9BXW9 1451 aa10.09□□□□□ -0.79
USP48-206ENST00000464577 ERICH6Q7L0X2 663 aa10.08□□□□□ -0.8
USP48-206ENST00000464577 ATP1B4Q9UN42 357 aaPredicted RBP10.08□□□□□ -0.8
USP48-206ENST00000464577 LRRIQ1Q96JM4 1722 aa10.08□□□□□ -0.8
USP48-206ENST00000464577 WASHC2AQ641Q2 1341 aa10.08□□□□□ -0.8
USP48-206ENST00000464577 TCOF1Q13428 1488 aaKnown RBP10.08□□□□□ -0.8
USP48-206ENST00000464577 UGGT2Q9NYU1 1516 aa10.08□□□□□ -0.8
USP48-206ENST00000464577 POLA1P09884 1462 aaPredicted RBP10.07□□□□□ -0.8
USP48-206ENST00000464577 TOPBP1Q92547 1522 aa10.06□□□□□ -0.8
USP48-206ENST00000464577 HSPA5P11021 654 aaKnown RBP10.06□□□□□ -0.8
USP48-206ENST00000464577 NCOA1Q15788 1441 aa10.06□□□□□ -0.8
USP48-206ENST00000464577 DENND4BO75064 1496 aaPredicted RBP10.05□□□□□ -0.8
USP48-206ENST00000464577 RAD54L2Q9Y4B4 1467 aa10.05□□□□□ -0.8
USP48-206ENST00000464577 PPP4R3CPQ6ZMV5 832 aa10.05□□□□□ -0.8
USP48-206ENST00000464577 ABCA5Q8WWZ7 1642 aa10.04□□□□□ -0.8
USP48-206ENST00000464577 EIF4G2P78344 907 aaKnown RBP eCLIP10.04□□□□□ -0.8
USP48-206ENST00000464577 ZBED9Q6R2W3 1325 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms