RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 RIMBP3CA6NJZ7 1639 aa32.73■■■□□ 2.83
COL9A3-204ENST00000463487 RIMBP3BA6NNM3 1639 aa32.73■■■□□ 2.83
COL9A3-204ENST00000463487 RIMBP3Q9UFD9 1639 aa32.73■■■□□ 2.83
COL9A3-204ENST00000463487 SHROOM2Q13796 1616 aa32.69■■■□□ 2.82
COL9A3-204ENST00000463487 JPH4Q96JJ6 628 aa32.66■■■□□ 2.82
COL9A3-204ENST00000463487 IQGAP2Q13576 1575 aa32.63■■■□□ 2.81
COL9A3-204ENST00000463487 KIF21BO75037 1637 aa32.62■■■□□ 2.81
COL9A3-204ENST00000463487 CTTNBP2Q8WZ74 1663 aa32.59■■■□□ 2.81
COL9A3-204ENST00000463487 PRG4Q92954 1404 aaPredicted RBP32.58■■■□□ 2.81
COL9A3-204ENST00000463487 ARAP1Q96P48 1450 aa32.5■■■□□ 2.79
COL9A3-204ENST00000463487 GOLGA3Q08378 1498 aa32.48■■■□□ 2.79
COL9A3-204ENST00000463487 CARMIL2Q6F5E8 1435 aa32.48■■■□□ 2.79
COL9A3-204ENST00000463487 ERCC6L2Q5T890 1561 aa32.46■■■□□ 2.79
COL9A3-204ENST00000463487 CYB5RLQ6IPT4 315 aa32.46■■■□□ 2.79
COL9A3-204ENST00000463487 UGGT2Q9NYU1 1516 aa32.45■■■□□ 2.78
COL9A3-204ENST00000463487 UBTFP17480 764 aaKnown RBP32.38■■■□□ 2.77
COL9A3-204ENST00000463487 EHMT2Q96KQ7 1210 aa32.33■■■□□ 2.77
COL9A3-204ENST00000463487 DISP1Q96F81 1524 aa32.31■■■□□ 2.76
COL9A3-204ENST00000463487 TNIKQ9UKE5 1360 aa32.31■■■□□ 2.76
COL9A3-204ENST00000463487 KIAA0556O60303 1618 aa32.29■■■□□ 2.76
COL9A3-204ENST00000463487 PTPRGP23470 1445 aa32.25■■■□□ 2.75
COL9A3-204ENST00000463487 TTBK1Q5TCY1 1321 aaPredicted RBP32.17■■■□□ 2.74
COL9A3-204ENST00000463487 SAMD9Q5K651 1589 aa32.15■■■□□ 2.74
COL9A3-204ENST00000463487 RANGAP1P46060 587 aaPredicted RBP32.15■■■□□ 2.74
COL9A3-204ENST00000463487 EFCAB5A4FU69 1503 aa32.15■■■□□ 2.74
COL9A3-204ENST00000463487 P3H3Q8IVL6 736 aa32.06■■■□□ 2.72
COL9A3-204ENST00000463487 NPM1P06748 294 aaKnown RBP eCLIP32.04■■■□□ 2.72
COL9A3-204ENST00000463487 UACAQ9BZF9 1416 aa32.03■■■□□ 2.72
COL9A3-204ENST00000463487 ADCY10Q96PN6 1610 aa32.01■■■□□ 2.72
COL9A3-204ENST00000463487 UHRF1BP1LA0JNW5 1464 aa31.99■■■□□ 2.71
COL9A3-204ENST00000463487 ABCC2Q92887 1545 aa31.97■■■□□ 2.71
COL9A3-204ENST00000463487 FHOD3Q2V2M9 1422 aa31.97■■■□□ 2.71
COL9A3-204ENST00000463487 ARHGAP35Q9NRY4 1499 aa31.92■■■□□ 2.7
COL9A3-204ENST00000463487 PLB1Q6P1J6 1458 aa31.91■■■□□ 2.7
COL9A3-204ENST00000463487 ABCA8O94911 1581 aa31.9■■■□□ 2.7
COL9A3-204ENST00000463487 CLIP1P30622 1438 aa31.88■■■□□ 2.69
COL9A3-204ENST00000463487 FMN1Q68DA7 1419 aa31.86■■■□□ 2.69
COL9A3-204ENST00000463487 LOC105371045A0A1W2PR82 267 aa31.86■■■□□ 2.69
COL9A3-204ENST00000463487 RAPGEF6Q8TEU7 1601 aa31.82■■■□□ 2.69
COL9A3-204ENST00000463487 MAPKBP1O60336 1514 aa31.81■■■□□ 2.68
COL9A3-204ENST00000463487 KDM5BQ9UGL1 1544 aa31.81■■■□□ 2.68
COL9A3-204ENST00000463487 CEP162Q5TB80 1403 aa31.79■■■□□ 2.68
COL9A3-204ENST00000463487 TRHP20396 242 aaPredicted RBP31.77■■■□□ 2.68
COL9A3-204ENST00000463487 ZCCHC11Q5TAX3 1644 aaKnown RBP31.75■■■□□ 2.67
COL9A3-204ENST00000463487 ASXL2Q76L83 1435 aa31.67■■■□□ 2.66
COL9A3-204ENST00000463487 HECW1Q76N89 1606 aa31.67■■■□□ 2.66
COL9A3-204ENST00000463487 NUP153P49790 1475 aaKnown RBP31.66■■■□□ 2.66
COL9A3-204ENST00000463487 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.63■■■□□ 2.65
COL9A3-204ENST00000463487 HNRNPUL2Q1KMD3 747 aaKnown RBP31.63■■■□□ 2.65
COL9A3-204ENST00000463487 ATP1B4Q9UN42 357 aaPredicted RBP31.63■■■□□ 2.65
COL9A3-204ENST00000463487 ATP10BO94823 1461 aa31.63■■■□□ 2.65
COL9A3-204ENST00000463487 ARID3CA6NKF2 412 aa31.62■■■□□ 2.65
COL9A3-204ENST00000463487 ABCC10Q5T3U5 1492 aa31.61■■■□□ 2.65
COL9A3-204ENST00000463487 WDR7Q9Y4E6 1490 aa31.59■■■□□ 2.65
COL9A3-204ENST00000463487 CASKIN1Q8WXD9 1431 aa31.58■■■□□ 2.65
COL9A3-204ENST00000463487 DIP2BQ9P265 1576 aa31.56■■■□□ 2.64
COL9A3-204ENST00000463487 FYCO1Q9BQS8 1478 aa31.55■■■□□ 2.64
COL9A3-204ENST00000463487 PCF11O94913 1555 aaKnown RBP31.55■■■□□ 2.64
COL9A3-204ENST00000463487 FAM69CQ0P6D2 419 aa31.54■■■□□ 2.64
COL9A3-204ENST00000463487 EPRSP07814 1512 aaKnown RBP31.51■■■□□ 2.63
COL9A3-204ENST00000463487 KIF13AQ9H1H9 1805 aa31.51■■■□□ 2.63
COL9A3-204ENST00000463487 CCDC18Q5T9S5 1454 aa31.49■■■□□ 2.63
COL9A3-204ENST00000463487 PLEKHD1A6NEE1 506 aa31.48■■■□□ 2.63
COL9A3-204ENST00000463487 CDK11AQ9UQ88 783 aaPredicted RBP31.48■■■□□ 2.63
COL9A3-204ENST00000463487 CDK13Q14004 1512 aaKnown RBP31.47■■■□□ 2.63
COL9A3-204ENST00000463487 GLI2P10070 1586 aa31.46■■■□□ 2.63
COL9A3-204ENST00000463487 KCNH8Q96L42 1107 aa31.42■■■□□ 2.62
COL9A3-204ENST00000463487 VPS8Q8N3P4 1428 aa31.41■■■□□ 2.62
COL9A3-204ENST00000463487 LRRIQ1Q96JM4 1722 aa31.35■■■□□ 2.61
COL9A3-204ENST00000463487 CFAP43Q8NDM7 1665 aa31.32■■■□□ 2.6
COL9A3-204ENST00000463487 MAP3K4Q9Y6R4 1608 aa31.31■■■□□ 2.6
COL9A3-204ENST00000463487 TROQ12816 1431 aaPredicted RBP31.28■■■□□ 2.6
COL9A3-204ENST00000463487 TSPOAP1O95153 1857 aa31.27■■■□□ 2.6
COL9A3-204ENST00000463487 ABCA9Q8IUA7 1624 aa31.27■■■□□ 2.6
COL9A3-204ENST00000463487 CD109Q6YHK3 1445 aa31.26■■■□□ 2.6
COL9A3-204ENST00000463487 TEX14Q8IWB6 1497 aa31.25■■■□□ 2.59
COL9A3-204ENST00000463487 KIF14Q15058 1648 aa31.23■■■□□ 2.59
COL9A3-204ENST00000463487 MAGI3Q5TCQ9 1506 aa31.19■■■□□ 2.58
COL9A3-204ENST00000463487 MTUS2Q5JR59 1369 aa31.18■■■□□ 2.58
COL9A3-204ENST00000463487 APLP2Q06481 763 aa31.17■■■□□ 2.58
COL9A3-204ENST00000463487 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.16■■■□□ 2.58
COL9A3-204ENST00000463487 PPRC1Q5VV67 1664 aaKnown RBP31.14■■■□□ 2.58
COL9A3-204ENST00000463487 TIAM1Q13009 1591 aa31.13■■■□□ 2.57
COL9A3-204ENST00000463487 MAP3K1Q13233 1512 aa31.12■■■□□ 2.57
COL9A3-204ENST00000463487 EHBP1L1Q8N3D4 1523 aa31.12■■■□□ 2.57
COL9A3-204ENST00000463487 TTC37Q6PGP7 1564 aa31.11■■■□□ 2.57
COL9A3-204ENST00000463487 PHLDB1Q86UU1 1377 aa31.05■■■□□ 2.56
COL9A3-204ENST00000463487 MYO5CQ9NQX4 1742 aa31.04■■■□□ 2.56
COL9A3-204ENST00000463487 CFAP74Q9C0B2 1584 aa31.04■■■□□ 2.56
COL9A3-204ENST00000463487 KDM6BO15054 1643 aa31.03■■■□□ 2.56
COL9A3-204ENST00000463487 PLCH2O75038 1416 aa31.02■■■□□ 2.56
COL9A3-204ENST00000463487 NEO1Q92859 1461 aa31.01■■■□□ 2.56
COL9A3-204ENST00000463487 ARAP3Q8WWN8 1544 aa31■■■□□ 2.55
COL9A3-204ENST00000463487 LRRC9Q6ZRR7 1453 aa31■■■□□ 2.55
COL9A3-204ENST00000463487 FANCAO15360 1455 aa30.99■■■□□ 2.55
COL9A3-204ENST00000463487 SUPT6HQ7KZ85 1726 aaKnown RBP30.96■■■□□ 2.55
COL9A3-204ENST00000463487 CCNB3Q8WWL7 1395 aa30.94■■■□□ 2.54
COL9A3-204ENST00000463487 ARHGAP5Q13017 1502 aa30.94■■■□□ 2.54
COL9A3-204ENST00000463487 EFCAB2Q5VUJ9 269 aa30.94■■■□□ 2.54
COL9A3-204ENST00000463487 PREX2Q70Z35 1606 aa30.93■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms